Characterizing the ecological and evolutionary dynamics of cancer
Zahir, Nastaran, Sun, Ruping, Gallahan, Daniel, Gatenby, Robert A., Curtis, Christina
Published in Nature genetics (01.08.2020)
Published in Nature genetics (01.08.2020)
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Journal Article
Promoter of lncRNA Gene PVT1 Is a Tumor-Suppressor DNA Boundary Element
Cho, Seung Woo, Xu, Jin, Sun, Ruping, Mumbach, Maxwell R., Carter, Ava C., Chen, Y. Grace, Yost, Kathryn E., Kim, Jeewon, He, Jing, Nevins, Stephanie A., Chin, Suet-Feung, Caldas, Carlos, Liu, S. John, Horlbeck, Max A., Lim, Daniel A., Weissman, Jonathan S., Curtis, Christina, Chang, Howard Y.
Published in Cell (31.05.2018)
Published in Cell (31.05.2018)
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Journal Article
The deubiquitinase USP11 ameliorates intervertebral disc degeneration by regulating oxidative stress-induced ferroptosis via deubiquitinating and stabilizing Sirt3
Zhu, Jian, Sun, Ruping, Sun, Kaiqiang, Yan, Chen, Jiang, Jialin, Kong, Fanqi, Shi, Jiangang
Published in Redox biology (01.06.2023)
Published in Redox biology (01.06.2023)
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Journal Article
Clonal replacement and heterogeneity in breast tumors treated with neoadjuvant HER2-targeted therapy
Caswell-Jin, Jennifer L., McNamara, Katherine, Reiter, Johannes G., Sun, Ruping, Hu, Zheng, Ma, Zhicheng, Ding, Jie, Suarez, Carlos J., Tilk, Susanne, Raghavendra, Akshara, Forte, Victoria, Chin, Suet-Feung, Bardwell, Helen, Provenzano, Elena, Caldas, Carlos, Lang, Julie, West, Robert, Tripathy, Debu, Press, Michael F., Curtis, Christina
Published in Nature communications (08.02.2019)
Published in Nature communications (08.02.2019)
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Journal Article
Evolving copy number gains promote tumor expansion and bolster mutational diversification
Wang, Zicheng, Xia, Yunong, Mills, Lauren, Nikolakopoulos, Athanasios N., Maeser, Nicole, Dehm, Scott M., Sheltzer, Jason M., Sun, Ruping
Published in Nature communications (06.03.2024)
Published in Nature communications (06.03.2024)
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Journal Article
Quantitative evidence for early metastatic seeding in colorectal cancer
Hu, Zheng, Ding, Jie, Ma, Zhicheng, Sun, Ruping, Seoane, Jose A., Scott Shaffer, J., Suarez, Carlos J., Berghoff, Anna S., Cremolini, Chiara, Falcone, Alfredo, Loupakis, Fotios, Birner, Peter, Preusser, Matthias, Lenz, Heinz-Josef, Curtis, Christina
Published in Nature genetics (17.06.2019)
Published in Nature genetics (17.06.2019)
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Journal Article
Publisher Correction: Clonal replacement and heterogeneity in breast tumors treated with neoadjuvant HER2-targeted therapy
Caswell-Jin, Jennifer L., McNamara, Katherine, Reiter, Johannes G., Sun, Ruping, Hu, Zheng, Ma, Zhicheng, Ding, Jie, Suarez, Carlos J., Tilk, Susanne, Raghavendra, Akshara, Forte, Victoria, Chin, Suet-Feung, Bardwell, Helen, Provenzano, Elena, Caldas, Carlos, Lang, Julie, West, Robert, Tripathy, Debu, Press, Michael F., Curtis, Christina
Published in Nature communications (30.05.2019)
Published in Nature communications (30.05.2019)
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Journal Article
Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS
EMDE, Anne-Katrin, SCHULZ, Marcel H, WEESE, David, RUPING SUN, VINGRON, Martin, KALSCHEUER, Vera M, HAAS, Stefan A, REINERT, Knut
Published in Bioinformatics (Oxford, England) (01.03.2012)
Published in Bioinformatics (Oxford, England) (01.03.2012)
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Journal Article
Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads
RUPING SUN, LOVE, Michael I, ZEMOJTEL, Tomasz, EMDE, Anne-Katrin, CHUNG, Ho-Ryun, VINGRON, Martin, HAAS, Stefan A
Published in Bioinformatics (Oxford, England) (01.04.2012)
Published in Bioinformatics (Oxford, England) (01.04.2012)
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Journal Article
Simultaneously detection of genomic and expression alterations in prostate cancer using cDNA microarray
Jiang, Mei, Li, Ming, Fu, Xuping, Huang, Yan, Qian, Hui, Sun, Ruping, Mao, Yumin, Xie, Yi, Li, Yao
Published in The Prostate (01.10.2008)
Published in The Prostate (01.10.2008)
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Journal Article
Big Bang Tumor Growth and Clonal Evolution
Sun, Ruping, Hu, Zheng, Curtis, Christina
Published in Cold Spring Harbor perspectives in medicine (01.05.2018)
Published in Cold Spring Harbor perspectives in medicine (01.05.2018)
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Journal Article
Parameter estimation from single patient, single time-point sequencing data of recurrent tumors
Leder, Kevin, Sun, Ruping, Wang, Zicheng, Zhang, Xuanming
Published in Journal of mathematical biology (01.11.2024)
Published in Journal of mathematical biology (01.11.2024)
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Journal Article
Quantitative evidence for early metastatic seeding in colorectal cancer
Hu, Zheng, Ding, Jie, Ma, Zhicheng, Sun, Ruping, Seoane, Jose A., Scott Shaffer, J., Suarez, Carlos J., Berghoff, Anna S., Cremolini, Chiara, Falcone, Alfredo, Loupakis, Fotios, Birner, Peter, Preusser, Matthias, Lenz, Heinz-Josef, Curtis, Christina
Published in Nature genetics (01.07.2019)
Published in Nature genetics (01.07.2019)
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Journal Article
Hesperidin mitigates oxidative stress-induced ferroptosis in nucleus pulposus cells via Nrf2/NF-κB axis to protect intervertebral disc from degeneration
Zhu, Jian, Sun, Ruping, Yan, Chen, Sun, Kaiqiang, Gao, Lu, Zheng, Bing, Shi, Jiangang
Published in Cell cycle (Georgetown, Tex.) (19.05.2023)
Published in Cell cycle (Georgetown, Tex.) (19.05.2023)
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Journal Article
Between-region genetic divergence reflects the mode and tempo of tumor evolution
Sun, Ruping, Hu, Zheng, Sottoriva, Andrea, Graham, Trevor A, Harpak, Arbel, Ma, Zhicheng, Fischer, Jared M, Shibata, Darryl, Curtis, Christina
Published in Nature genetics (01.07.2017)
Published in Nature genetics (01.07.2017)
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