High-definition spatial transcriptomics for in situ tissue profiling
Vickovic, Sanja, Eraslan, Gökcen, Salmén, Fredrik, Klughammer, Johanna, Stenbeck, Linnea, Schapiro, Denis, Äijö, Tarmo, Bonneau, Richard, Bergenstråhle, Ludvig, Navarro, José Fernandéz, Gould, Joshua, Griffin, Gabriel K., Borg, Åke, Ronaghi, Mostafa, Frisén, Jonas, Lundeberg, Joakim, Regev, Aviv, Ståhl, Patrik L.
Published in Nature methods (01.10.2019)
Published in Nature methods (01.10.2019)
Get full text
Journal Article
Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain
Lake, Blue B., Ai, Rizi, Kaeser, Gwendolyn E., Salathia, Neeraj S., Yung, Yun C., Liu, Rui, Wildberg, Andre, Gao, Derek, Fung, Ho-Lim, Chen, Song, Vijayaraghavan, Raakhee, Wong, Julian, Chen, Allison, Sheng, Xiaoyan, Kaper, Fiona, Shen, Richard, Ronaghi, Mostafa, Fan, Jian-Bing, Wang, Wei, Chun, Jerold, Zhang, Kun
Published in Science (American Association for the Advancement of Science) (24.06.2016)
Published in Science (American Association for the Advancement of Science) (24.06.2016)
Get full text
Journal Article
In vitro, long-range sequence information for de novo genome assembly via transposase contiguity
Adey, Andrew, Kitzman, Jacob O, Burton, Joshua N, Daza, Riza, Kumar, Akash, Christiansen, Lena, Ronaghi, Mostafa, Amini, Sasan, Gunderson, Kevin L, Steemers, Frank J, Shendure, Jay
Published in Genome research (01.12.2014)
Published in Genome research (01.12.2014)
Get full text
Journal Article
Ontology-based meta-analysis of global collections of high-throughput public data
Kupershmidt, Ilya, Su, Qiaojuan Jane, Grewal, Anoop, Sundaresh, Suman, Halperin, Inbal, Flynn, James, Shekar, Mamatha, Wang, Helen, Park, Jenny, Cui, Wenwu, Wall, Gregory D, Wisotzkey, Robert, Alag, Satnam, Akhtari, Saeid, Ronaghi, Mostafa
Published in PloS one (29.09.2010)
Published in PloS one (29.09.2010)
Get full text
Journal Article
mRNA-Seq of single prostate cancer circulating tumor cells reveals recapitulation of gene expression and pathways found in prostate cancer
Cann, Gordon M, Gulzar, Zulfiqar G, Cooper, Samantha, Li, Robin, Luo, Shujun, Tat, Mai, Stuart, Sarah, Schroth, Gary, Srinivas, Sandhya, Ronaghi, Mostafa, Brooks, James D, Talasaz, Amirali H
Published in PloS one (07.11.2012)
Published in PloS one (07.11.2012)
Get full text
Journal Article
Sequencing and Analysis of Strobilanthes cusia (Nees) Kuntze Chloroplast Genome Revealed the Rare Simultaneous Contraction and Expansion of the Inverted Repeat Region in Angiosperm
Chen, Haimei, Shao, Junjie, Zhang, Hui, Jiang, Mei, Huang, Linfang, Zhang, Zhao, Yang, Dan, He, Molly, Ronaghi, Mostafa, Luo, Xi, Sun, Botao, Wu, Wuwei, Liu, Chang
Published in Frontiers in plant science (14.03.2018)
Published in Frontiers in plant science (14.03.2018)
Get full text
Journal Article
Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube
Zhang, Fan, Christiansen, Lena, Thomas, Jerushah, Pokholok, Dmitry, Jackson, Ros, Morrell, Natalie, Zhao, Yannan, Wiley, Melissa, Welch, Emily, Jaeger, Erich, Granat, Ana, Norberg, Steven J, Halpern, Aaron, C Rogert, Maria, Ronaghi, Mostafa, Shendure, Jay, Gormley, Niall, Gunderson, Kevin L, Steemers, Frank J
Published in Nature biotechnology (01.09.2017)
Published in Nature biotechnology (01.09.2017)
Get full text
Journal Article
Whole-genome sequencing and assembly with high-throughput, short-read technologies
Sundquist, Andreas, Ronaghi, Mostafa, Tang, Haixu, Pevzner, Pavel, Batzoglou, Serafim
Published in PloS one (30.05.2007)
Published in PloS one (30.05.2007)
Get full text
Journal Article
Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems
Parameswaran, Poornima, Sklan, Ella, Wilkins, Courtney, Burgon, Trever, Samuel, Melanie A, Lu, Rui, Ansel, K Mark, Heissmeyer, Vigo, Einav, Shirit, Jackson, William, Doukas, Tammy, Paranjape, Suman, Polacek, Charlotta, dos Santos, Flavia Barreto, Jalili, Roxana, Babrzadeh, Farbod, Gharizadeh, Baback, Grimm, Dirk, Kay, Mark, Koike, Satoshi, Sarnow, Peter, Ronaghi, Mostafa, Ding, Shou-Wei, Harris, Eva, Chow, Marie, Diamond, Michael S, Kirkegaard, Karla, Glenn, Jeffrey S, Fire, Andrew Z
Published in PLoS pathogens (01.02.2010)
Published in PLoS pathogens (01.02.2010)
Get full text
Journal Article
Whole-genome haplotyping by dilution, amplification, and sequencing
Kaper, Fiona, Swamy, Sajani, Klotzle, Brandy, Munchel, Sarah, Cottrell, Joseph, Bibikova, Marina, Chuang, Han-Yu, Kruglyak, Semyon, Ronaghi, Mostafa, Eberle, Michael A., Fan, Jian-Bing
Published in Proceedings of the National Academy of Sciences - PNAS (02.04.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (02.04.2013)
Get full text
Journal Article
Viral population estimation using pyrosequencing
Eriksson, Nicholas, Pachter, Lior, Mitsuya, Yumi, Rhee, Soo-Yon, Wang, Chunlin, Gharizadeh, Baback, Ronaghi, Mostafa, Shafer, Robert W, Beerenwinkel, Niko
Published in PLoS computational biology (09.05.2008)
Published in PLoS computational biology (09.05.2008)
Get full text
Journal Article
Loss of function mutations in the gene encoding latent transforming growth factor beta binding protein 2, LTBP2, cause primary congenital glaucoma
Narooie-Nejad, Mehrnaz, Paylakhi, Seyed Hassan, Shojaee, Seyedmehdi, Fazlali, Zeinab, Rezaei Kanavi, Mozhgan, Nilforushan, Naveed, Yazdani, Shahin, Babrzadeh, Farbod, Suri, Fatemeh, Ronaghi, Mostafa, Elahi, Elahe, Paisán-Ruiz, Coro
Published in Human molecular genetics (15.10.2009)
Published in Human molecular genetics (15.10.2009)
Get full text
Journal Article
LTBP2 mutations cause Weill-Marchesani and Weill-Marchesani-like syndrome and affect disruptions in the extracellular matrix
Haji-Seyed-Javadi, Ramona, Jelodari-Mamaghani, Sahar, Paylakhi, Seyed Hassan, Yazdani, Shahin, Nilforushan, Naveed, Fan, Jian-Bing, Klotzle, Brandy, Mahmoudi, Mohammad Jafar, Ebrahimian, Mohammad Jafar, Chelich, Noori, Taghiabadi, Ehsan, Kamyab, Kambiz, Boileau, Catherine, Paisan-Ruiz, Coro, Ronaghi, Mostafa, Elahi, Elahe
Published in Human mutation (01.08.2012)
Published in Human mutation (01.08.2012)
Get full text
Journal Article
Bacterial flora-typing with targeted, chip-based Pyrosequencing
Sundquist, Andreas, Bigdeli, Saharnaz, Jalili, Roxana, Druzin, Maurice L, Waller, Sarah, Pullen, Kristin M, El-Sayed, Yasser Y, Taslimi, M Mark, Batzoglou, Serafim, Ronaghi, Mostafa
Published in BMC microbiology (30.11.2007)
Published in BMC microbiology (30.11.2007)
Get full text
Journal Article
Minority Human Immunodeficiency Virus Type 1 Variants in Antiretroviral-Naive Persons with Reverse Transcriptase Codon 215 Revertant Mutations
MITSUYA, Yumi, VARGHESE, Vici, SHAFER, Robert W, CHUNLIN WANG, LIU, Tommy F, HOLMES, Susan P, JAYAKUMAR, Prerana, GHARIZADEH, Baback, RONAGHI, Mostafa, KLEIN, Daniel, FESSEL, W. Jeffrey
Published in Journal of Virology (01.11.2008)
Published in Journal of Virology (01.11.2008)
Get full text
Journal Article
Deregulated Direct Targets of the Hepatitis B Virus (HBV) Protein, HBx, Identified through Chromatin Immunoprecipitation and Expression Microarray Profiling
Sung, Wing-Kin, Lu, Yiwei, Lee, Charlie W.H., Zhang, Dongwei, Ronaghi, Mostafa, Lee, Caroline G.L.
Published in The Journal of biological chemistry (14.08.2009)
Published in The Journal of biological chemistry (14.08.2009)
Get full text
Journal Article
Prediction of Protein Orientation upon Immobilization on Biological and Nonbiological Surfaces
Talasaz, AmirAli H., Nemat-Gorgani, Mohsen, Liu, Yang, Ståhl, Patrik, Dutton, Robert W., Ronaghi, Mostafa, Davis, Ronald W.
Published in Proceedings of the National Academy of Sciences - PNAS (03.10.2006)
Published in Proceedings of the National Academy of Sciences - PNAS (03.10.2006)
Get full text
Journal Article
Highly parallel genome-wide expression analysis of single mammalian cells
Fan, Jian-Bing, Chen, Jing, April, Craig S, Fisher, Jeffrey S, Klotzle, Brandy, Bibikova, Marina, Kaper, Fiona, Ronaghi, Mostafa, Linnarsson, Sten, Ota, Takayo, Chien, Jeremy, Laurent, Louise C, Loring, Jeanne F, Nisperos, Sean V, Chen, Gina Y, Zhong, Jiang F
Published in PloS one (08.02.2012)
Published in PloS one (08.02.2012)
Get full text
Journal Article