INKA, an integrative data analysis pipeline for phosphoproteomic inference of active kinases
Beekhof, Robin, van Alphen, Carolien, Henneman, Alex A, Knol, Jaco C, Pham, Thang V, Rolfs, Frank, Labots, Mariette, Henneberry, Evan, Le Large, Tessa YS, de Haas, Richard R, Piersma, Sander R, Vurchio, Valentina, Bertotti, Andrea, Trusolino, Livio, Verheul, Henk MW, Jimenez, Connie R
Published in Molecular systems biology (01.04.2019)
Published in Molecular systems biology (01.04.2019)
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Journal Article
VRK1 Regulates Sensitivity to Oxidative Stress by Altering Histone Epigenetic Modifications and the Nuclear Phosphoproteome in Tumor Cells
Navarro-Carrasco, Elena, Monte-Serrano, Eva, Campos-Díaz, Aurora, Rolfs, Frank, de Goeij-de Haas, Richard, Pham, Thang V, Piersma, Sander R, González-Alonso, Paula, Jiménez, Connie R, Lazo, Pedro A
Published in International journal of molecular sciences (01.05.2024)
Published in International journal of molecular sciences (01.05.2024)
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Journal Article
Multi-omics analysis reveals distinct non-reversion mechanisms of PARPi resistance in BRCA1- versus BRCA2-deficient mammary tumors
Bhin, Jinhyuk, Paes Dias, Mariana, Gogola, Ewa, Rolfs, Frank, Piersma, Sander R., de Bruijn, Roebi, de Ruiter, Julian R., van den Broek, Bram, Duarte, Alexandra A., Sol, Wendy, van der Heijden, Ingrid, Andronikou, Christina, Kaiponen, Taina S., Bakker, Lara, Lieftink, Cor, Morris, Ben, Beijersbergen, Roderick L., van de Ven, Marieke, Jimenez, Connie R., Wessels, Lodewyk F.A., Rottenberg, Sven, Jonkers, Jos
Published in Cell reports (Cambridge) (30.05.2023)
Published in Cell reports (Cambridge) (30.05.2023)
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Journal Article
Dual Role of the Antioxidant Enzyme Peroxiredoxin 6 in Skin Carcinogenesis
ROLFS, Frank, HUBER, Marcel, WERNER, Sabine, GRUBER, Florian, BÖHM, Friederike, PFISTER, Herbert J, BOCHKOV, Valery N, TSCHACHLER, Erwin, DUMMER, Reinhard, HOHL, Daniel, SCHÄFER, Matthias
Published in Cancer research (Chicago, Ill.) (01.06.2013)
Published in Cancer research (Chicago, Ill.) (01.06.2013)
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Journal Article
Nrf2 Activation Promotes Keratinocyte Survival during Early Skin Carcinogenesis via Metabolic Alterations
Rolfs, Frank, Huber, Marcel, Kuehne, Andreas, Kramer, Stefan, Haertel, Eric, Muzumdar, Sukalp, Wagner, Johanna, Tanner, Yasmine, Böhm, Friederike, Smola, Sigrun, Zamboni, Nicola, Levesque, Mitchell P, Dummer, Reinhard, Beer, Hans-Dietmar, Hohl, Daniel, Werner, Sabine, Schäfer, Matthias
Published in Cancer research (Chicago, Ill.) (15.11.2015)
Published in Cancer research (Chicago, Ill.) (15.11.2015)
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Journal Article
INKA, an integrative data analysis pipeline for phosphoproteomic inference of active kinases
Beekhof, Robin, Alphen, Carolien, Henneman, Alex A, Knol, Jaco C, Pham, Thang V, Rolfs, Frank, Labots, Mariette, Henneberry, Evan, Le Large, Tessa YS, Haas, Richard R, Piersma, Sander R, Vurchio, Valentina, Bertotti, Andrea, Trusolino, Livio, Verheul, Henk MW, Jimenez, Connie R
Published in Molecular systems biology (01.05.2019)
Published in Molecular systems biology (01.05.2019)
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Journal Article
Secretome processing for proteomics: A methods comparison
Almeida‐Marques, Catarina, Rolfs, Frank, Piersma, Sander R., Bijnsdorp, Irene V., Pham, Thang V., Knol, Jaco C., Jimenez, Connie R.
Published in Proteomics (Weinheim) (01.04.2024)
Published in Proteomics (Weinheim) (01.04.2024)
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Journal Article
NF-κB/RelA and Nrf2 cooperate to maintain hepatocyte integrity and to prevent development of hepatocellular adenoma
Köhler, Ulrike A, Böhm, Friederike, Rolfs, Frank, Egger, Michèle, Hornemann, Thorsten, Pasparakis, Manolis, Weber, Achim, Werner, Sabine
Published in Journal of hepatology (01.01.2016)
Published in Journal of hepatology (01.01.2016)
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Journal Article
Loss of VRK1 alters the nuclear phosphoproteome in the DNA damage response to doxorubicin
Navarro-Carrasco, Elena, Campos-Díaz, Aurora, Monte-Serrano, Eva, Rolfs, Frank, de Goeij-de Haas, Richard, Pham, Thang V., Piersma, Sander R., Jiménez, Connie R., Lazo, Pedro A.
Published in Chemico-biological interactions (01.03.2024)
Published in Chemico-biological interactions (01.03.2024)
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Journal Article
Feasibility of phosphoproteomics to uncover oncogenic signalling in secreted extracellular vesicles using glioblastoma-EGFRVIII cells as a model
Bijnsdorp, Irene V., Schelfhorst, Tim, Luinenburg, Mark, Rolfs, Frank, Piersma, Sander R., de Haas, Richard R., Pham, Thang V., Jimenez, Connie R.
Published in Journal of proteomics (10.02.2021)
Published in Journal of proteomics (10.02.2021)
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Journal Article
Publisher Correction: Truncated FGFR2 is a clinically actionable oncogene in multiple cancers
Zingg, Daniel, Bhin, Jinhyuk, Yemelyanenko, Julia, Kas, Sjors M., Rolfs, Frank, Lutz, Catrin, Lee, Jessica K., Klarenbeek, Sjoerd, Silverman, Ian M., Annunziato, Stefano, Chan, Chang S., Piersma, Sander R., Eijkman, Timo, Badoux, Madelon, Gogola, Ewa, Siteur, Bjørn, Sprengers, Justin, de Klein, Bim, de Goeij-de Haas, Richard R., Riedlinger, Gregory M., Ke, Hua, Madison, Russell, Drenth, Anne Paulien, van der Burg, Eline, Schut, Eva, Henneman, Linda, van Miltenburg, Martine H., Proost, Natalie, Zhen, Huiling, Wientjens, Ellen, de Bruijn, Roebi, de Ruiter, Julian R., Boon, Ute, de Korte-Grimmerink, Renske, van Gerwen, Bastiaan, Féliz, Luis, Abou-Alfa, Ghassan K., Ross, Jeffrey S., van de Ven, Marieke, Rottenberg, Sven, Cuppen, Edwin, Chessex, Anne Vaslin, Ali, Siraj M., Burn, Timothy C., Jimenez, Connie R., Ganesan, Shridar, Wessels, Lodewyk F. A., Jonkers, Jos
Published in Nature (London) (29.09.2022)
Published in Nature (London) (29.09.2022)
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Journal Article
Erratum To: INKA, an integrative data analysis pipeline for phosphoproteomic inference of active kinases
Beekhof, Robin, van Alphen, Carolien, Henneman, Alex A, Knol, Jaco C, Pham, Thang V, Rolfs, Frank, Labots, Mariette, Henneberry, Evan, Le Large, Tessa YS, de Haas, Richard R, Piersma, Sander R, Vurchio, Valentina, Bertotti, Andrea, Trusolino, Livio, Verheul, Henk MW, Jimenez, Connie R
Published in Molecular systems biology (24.05.2019)
Published in Molecular systems biology (24.05.2019)
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Journal Article
INKA, an integrative data analysis pipeline for phosphoproteomic inference of active phosphokinases
Pham, Thang V, Beekhof, Robin, Carolien Van Alphen, Knol, Jaco C, Henneman, Alex A, Rolfs, Frank, Labots, Mariette, Henneberry, Evan, Tessa Ys Le Large, De Haas, Richard R, Piersma, Sander R, Verheul, Henk, Jimenez, Connie R
Published in bioRxiv (02.02.2018)
Published in bioRxiv (02.02.2018)
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