DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations
Rodrigues, Carlos H.M., Pires, Douglas E.V., Ascher, David B.
Published in Protein science (01.01.2021)
Published in Protein science (01.01.2021)
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Journal Article
DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability
Rodrigues, Carlos HM, Pires, Douglas EV, Ascher, David B
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
DDMut: predicting effects of mutations on protein stability using deep learning
Zhou, Yunzhuo, Pan, Qisheng, Pires, Douglas E V, Rodrigues, Carlos H M, Ascher, David B
Published in Nucleic acids research (05.07.2023)
Published in Nucleic acids research (05.07.2023)
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Journal Article
mCSM-PPI2: predicting the effects of mutations on protein-protein interactions
Rodrigues, Carlos H M, Myung, Yoochan, Pires, Douglas E V, Ascher, David B
Published in Nucleic acids research (02.07.2019)
Published in Nucleic acids research (02.07.2019)
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Journal Article
Neural stem cell differentiation by electrical stimulation using a cross-linked PEDOT substrate: Expanding the use of biocompatible conjugated conductive polymers for neural tissue engineering
Pires, Filipa, Ferreira, Quirina, Rodrigues, Carlos A.V., Morgado, Jorge, Ferreira, Frederico Castelo
Published in Biochimica et biophysica acta (01.06.2015)
Published in Biochimica et biophysica acta (01.06.2015)
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Journal Article
mCSM-membrane: predicting the effects of mutations on transmembrane proteins
Pires, Douglas E V, Rodrigues, Carlos H M, Ascher, David B
Published in Nucleic acids research (02.07.2020)
Published in Nucleic acids research (02.07.2020)
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Journal Article
Structure guided prediction of Pyrazinamide resistance mutations in pncA
Karmakar, Malancha, Rodrigues, Carlos H. M., Horan, Kristy, Denholm, Justin T., Ascher, David B.
Published in Scientific reports (05.02.2020)
Published in Scientific reports (05.02.2020)
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Journal Article
mmCSM-PPI: predicting the effects of multiple point mutations on protein–protein interactions
Rodrigues, Carlos H M, Pires, Douglas E V, Ascher, David B
Published in Nucleic acids research (02.07.2021)
Published in Nucleic acids research (02.07.2021)
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Journal Article
Empirical ways to identify novel Bedaquiline resistance mutations in AtpE
Karmakar, Malancha, Rodrigues, Carlos H M, Holt, Kathryn E, Dunstan, Sarah J, Denholm, Justin, Ascher, David B
Published in PloS one (29.05.2019)
Published in PloS one (29.05.2019)
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Journal Article
Stem cell cultivation in bioreactors
Rodrigues, Carlos A.V., Fernandes, Tiago G., Diogo, Maria Margarida, da Silva, Cláudia Lobato, Cabral, Joaquim M.S.
Published in Biotechnology advances (01.11.2011)
Published in Biotechnology advances (01.11.2011)
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Journal Article
Exploring the structural distribution of genetic variation in SARS-CoV-2 with the COVID-3D online resource
Portelli, Stephanie, Olshansky, Moshe, Rodrigues, Carlos H. M., D’Souza, Elston N., Myung, Yoochan, Silk, Michael, Alavi, Azadeh, Pires, Douglas E. V., Ascher, David B.
Published in Nature genetics (01.10.2020)
Published in Nature genetics (01.10.2020)
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Journal Article
Transcriptomic analysis of 3D Cardiac Differentiation of Human Induced Pluripotent Stem Cells Reveals Faster Cardiomyocyte Maturation Compared to 2D Culture
Branco, Mariana A., Cotovio, João P., Rodrigues, Carlos A. V., Vaz, Sandra H., Fernandes, Tiago G., Moreira, Leonilde M., Cabral, Joaquim M. S., Diogo, Maria Margarida
Published in Scientific reports (25.06.2019)
Published in Scientific reports (25.06.2019)
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Transcriptome profiling of human pluripotent stem cell‐derived cerebellar organoids reveals faster commitment under dynamic conditions
Silva, Teresa P., Sousa-Luís, Rui, Fernandes, Tiago, Bekman, Evguenia, Vitorino Rodrigues, Carlos André, Henriques Vaz, Sandra Cristina, Moreira, Leonilde M., Hashimura, Yas, Jung, Sunghoon, Lee, Brian, Carmo-Fonseca, Maria, Cabral, Joaquim M.S.
Published in Biotechnology and bioengineering (01.07.2021)
Published in Biotechnology and bioengineering (01.07.2021)
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Journal Article
A structural biology community assessment of AlphaFold2 applications
Akdel, Mehmet, Pires, Douglas E. V., Pardo, Eduard Porta, Jänes, Jürgen, Zalevsky, Arthur O., Mészáros, Bálint, Bryant, Patrick, Good, Lydia L., Laskowski, Roman A., Pozzati, Gabriele, Shenoy, Aditi, Zhu, Wensi, Kundrotas, Petras, Serra, Victoria Ruiz, Rodrigues, Carlos H. M., Dunham, Alistair S., Burke, David, Borkakoti, Neera, Velankar, Sameer, Frost, Adam, Basquin, Jérôme, Lindorff-Larsen, Kresten, Bateman, Alex, Kajava, Andrey V., Valencia, Alfonso, Ovchinnikov, Sergey, Durairaj, Janani, Ascher, David B., Thornton, Janet M., Davey, Norman E., Stein, Amelie, Elofsson, Arne, Croll, Tristan I., Beltrao, Pedro
Published in Nature structural & molecular biology (01.11.2022)
Published in Nature structural & molecular biology (01.11.2022)
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