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Single-Nucleus RNA-Seq Is Not Suitable for Detection of Microglial Activation Genes in Humans
Thrupp, Nicola, Sala Frigerio, Carlo, Wolfs, Leen, Skene, Nathan G., Fattorelli, Nicola, Poovathingal, Suresh, Fourne, Yannick, Matthews, Paul M., Theys, Tom, Mancuso, Renzo, de Strooper, Bart, Fiers, Mark
Published in Cell reports (Cambridge) (29.09.2020)
Published in Cell reports (Cambridge) (29.09.2020)
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RNA-Seq Identifies Circulating miR-125a-5p, miR-125b-5p, and miR-143-3p as Potential Biomarkers for Acute Ischemic Stroke
Tiedt, Steffen, Prestel, Matthias, Malik, Rainer, Schieferdecker, Nicola, Duering, Marco, Kautzky, Veronika, Stoycheva, Ivelina, Böck, Julia, Northoff, Bernd H., Klein, Matthias, Dorn, Franziska, Krohn, Knut, Teupser, Daniel, Liesz, Arthur, Plesnila, Nikolaus, Holdt, Lesca Miriam, Dichgans, Martin
Published in Circulation research (29.09.2017)
Published in Circulation research (29.09.2017)
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Ranking noncanonical 5′ splice site usage by genome-wide RNA-seq analysis and splicing reporter assays
Erkelenz, Steffen, Theiss, Stephan, Kaisers, Wolfgang, Ptok, Johannes, Walotka, Lara, Müller, Lisa, Hillebrand, Frank, Brillen, Anna-Lena, Sladek, Michael, Schaal, Heiner
Published in Genome research (01.12.2018)
Published in Genome research (01.12.2018)
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scCOSMIX: A Mixed‐Effects Framework for Differential Coexpression and Transcriptional Interactions Modeling in Single‐Cell RNA‐Seq
Bussing, Anderson, Marra, Giampiero, Fan, Daping, Shinohara, Russell, Tu, Danni, Ho, Yen‐Yi
Published in Statistics in medicine (01.08.2025)
Published in Statistics in medicine (01.08.2025)
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RNA-Seq–based transcriptome analysis of corneal endothelial cells derived from patients with Fuchs endothelial corneal dystrophy
Nakagawa, Tatsuya, Tokuda, Yuichi, Nakano, Masakazu, Komori, Yuya, Hanada, Naoya, Tourtas, Theofilos, Schlötzer-Schrehardt, Ursula, Kruse, Friedrich, Tashiro, Kei, Koizumi, Noriko, Okumura, Naoki
Published in Scientific reports (27.05.2023)
Published in Scientific reports (27.05.2023)
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Single cell RNA-seq reveals profound transcriptional similarity between Barrett’s oesophagus and oesophageal submucosal glands
Owen, Richard Peter, White, Michael Joseph, Severson, David Tyler, Braden, Barbara, Bailey, Adam, Goldin, Robert, Wang, Lai Mun, Ruiz-Puig, Carlos, Maynard, Nicholas David, Green, Angie, Piazza, Paolo, Buck, David, Middleton, Mark Ross, Ponting, Chris Paul, Schuster-Böckler, Benjamin, Lu, Xin
Published in Nature communications (15.10.2018)
Published in Nature communications (15.10.2018)
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Single‐cell RNA‐seq reveals altered NK cell subsets and reduced levels of cytotoxic molecules in patients with ankylosing spondylitis
Ren, Conglin, Li, Mingshuang, Zheng, Yang, Cai, Bingbing, Du, Weibin, Zhang, Helou, Wu, Fengqing, Tong, Mengsha, Lin, Fu, Wang, Jinfu, Quan, Renfu
Published in Journal of cellular and molecular medicine (01.02.2022)
Published in Journal of cellular and molecular medicine (01.02.2022)
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Web-accessible application for identifying pathogenic transcripts with RNA-seq: Increased sensitivity in diagnosis of neurodevelopmental disorders
Dekker, Jordy, Schot, Rachel, Bongaerts, Michiel, de Valk, Walter G., van Veghel-Plandsoen, Monique M., Monfils, Kathryn, Douben, Hannie, Elfferich, Peter, Kasteleijn, Esmee, van Unen, Leontine M.A., Geeven, Geert, Saris, Jasper J., van Ierland, Yvette, Verheijen, Frans W., van der Sterre, Marianne L.T., Sadeghi Niaraki, Farah, Smits, Daphne J., Huidekoper, Hidde H., Williams, Monique, Wilke, Martina, Verhoeven, Virginie J.M., Joosten, Marieke, Kievit, Anneke J.A., van de Laar, Ingrid M.B.H., Hoefsloot, Lies H., Hoogeveen-Westerveld, Marianne, Nellist, Mark, Mancini, Grazia M.S., van Ham, Tjakko J.
Published in American journal of human genetics (02.02.2023)
Published in American journal of human genetics (02.02.2023)
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Systematic immune cell dysregulation and molecular subtypes revealed by single-cell RNA-seq of subjects with type 1 diabetes
Honardoost, Mohammad Amin, Adinatha, Andreas, Schmidt, Florian, Ranjan, Bobby, Ghaeidamini, Maryam, Arul Rayan, Nirmala, Gek Liang Lim, Michelle, Joanito, Ignasius, Xiao Xuan Lin, Quy, Rajagopalan, Deepa, Qi Mok, Shi, Hwang, You Yi, Larbi, Anis, Khor, Chiea Chuen, Foo, Roger, Boehm, Bernhard Otto, Prabhakar, Shyam
Published in Genome medicine (27.03.2024)
Published in Genome medicine (27.03.2024)
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Single-Cell RNA-seq of Human Myeloid-Derived Suppressor Cells in Late Sepsis Reveals Multiple Subsets With Unique Transcriptional Responses: A Pilot Study
Darden, Dijoia B, Bacher, Rhonda, Brusko, Maigan A, Knight, Parker, Hawkins, Russell B, Cox, Michael C, Dirain, Marvin L, Ungaro, Ricardo, Nacionales, Dina C, Rincon, Jaimar C, Gauthier, Marie-Pierre L, Kladde, Michael, Bihorac, Azra, Brusko, Todd M, Moore, Frederick A, Brakenridge, Scott C, Mohr, Alicia M, Moldawer, Lyle L, Efron, Philip A
Published in Shock (Augusta, Ga.) (01.05.2021)
Published in Shock (Augusta, Ga.) (01.05.2021)
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Enhancing droplet-based single-nucleus RNA-seq resolution using the semi-supervised machine learning classifier DIEM
Alvarez, Marcus, Rahmani, Elior, Jew, Brandon, Garske, Kristina M., Miao, Zong, Benhammou, Jihane N., Ye, Chun Jimmie, Pisegna, Joseph R., Pietiläinen, Kirsi H., Halperin, Eran, Pajukanta, Päivi
Published in Scientific reports (03.07.2020)
Published in Scientific reports (03.07.2020)
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Su1991: SINGLE NUCLEAR RNA-SEQ REVEALS TRANSCRIPTIONAL SIGNATURES OF SPONDYLOARTHRITIS IN CD14+ MONOCYTES AND CD4+ T CELLS IN SUBJECTS WITH CROHN’S DISEASE
Tran, Nancy, Cardakli, Emre, Cheong, Jin Gyu, Xiang, Grace, Ericsson, Caroline, Lukin, Dana J., Scherl, Ellen J., Niec, Rachel, Longman, Randy
Published in Gastroenterology (New York, N.Y. 1943) (03.05.2025)
Published in Gastroenterology (New York, N.Y. 1943) (03.05.2025)
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‘N-of-1- pathways ’ unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine
Gardeux, Vincent, Achour, Ikbel, Li, Jianrong, Maienschein-Cline, Mark, Li, Haiquan, Pesce, Lorenzo, Parinandi, Gurunadh, Bahroos, Neil, Winn, Robert, Foster, Ian, Garcia, Joe G N, Lussier, Yves A
Published in Journal of the American Medical Informatics Association : JAMIA (01.11.2014)
Published in Journal of the American Medical Informatics Association : JAMIA (01.11.2014)
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Diagnostic Utility of Comprehensive RNA-Seq Analysis in Adult B-ALL
Farnoud, Noushin, Liosis, Konstantinos, Leongamornlert, Daniel, Gutiérrez-Abril, Jesús, Arango Ossa, Juan E., Gundem, Gunes, Amallraja, Anu, Domenico, Dylan, McCarter, Joseph, Kirkwood, Amy A, Clifton-Hadley, Laura, Patel Wrench, Bela, Moorman, Anthony, Fielding, Adele Kay, Papaemmanuil, Elli
Published in Blood (02.11.2023)
Published in Blood (02.11.2023)
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