Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR
Olson, Robert D, Assaf, Rida, Brettin, Thomas, Conrad, Neal, Cucinell, Clark, Davis, James J, Dempsey, Donald M, Dickerman, Allan, Dietrich, Emily M, Kenyon, Ronald W, Kuscuoglu, Mehmet, Lefkowitz, Elliot J, Lu, Jian, Machi, Dustin, Macken, Catherine, Mao, Chunhong, Niewiadomska, Anna, Nguyen, Marcus, Olsen, Gary J, Overbeek, Jamie C, Parrello, Bruce, Parrello, Victoria, Porter, Jacob S, Pusch, Gordon D, Shukla, Maulik, Singh, Indresh, Stewart, Lucy, Tan, Gene, Thomas, Chris, VanOeffelen, Margo, Vonstein, Veronika, Wallace, Zachary S, Warren, Andrew S, Wattam, Alice R, Xia, Fangfang, Yoo, Hyunseung, Zhang, Yun, Zmasek, Christian M, Scheuermann, Richard H, Stevens, Rick L
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
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Journal Article
Spontaneous dormancy protects Trypanosoma cruzi during extended drug exposure
Sánchez-Valdéz, Fernando J, Padilla, Angel, Wang, Wei, Orr, Dylan, Tarleton, Rick L
Published in eLife (26.03.2018)
Published in eLife (26.03.2018)
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Journal Article
Converting tabular data into images for deep learning with convolutional neural networks
Zhu, Yitan, Brettin, Thomas, Xia, Fangfang, Partin, Alexander, Shukla, Maulik, Yoo, Hyunseung, Evrard, Yvonne A, Doroshow, James H, Stevens, Rick L
Published in Scientific reports (31.05.2021)
Published in Scientific reports (31.05.2021)
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Journal Article
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
Wattam, Alice R, Davis, James J, Assaf, Rida, Boisvert, Sébastien, Brettin, Thomas, Bun, Christopher, Conrad, Neal, Dietrich, Emily M, Disz, Terry, Gabbard, Joseph L, Gerdes, Svetlana, Henry, Christopher S, Kenyon, Ronald W, Machi, Dustin, Mao, Chunhong, Nordberg, Eric K, Olsen, Gary J, Murphy-Olson, Daniel E, Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D, Shukla, Maulik, Vonstein, Veronika, Warren, Andrew, Xia, Fangfang, Yoo, Hyunseung, Stevens, Rick L
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
High-throughput generation, optimization and analysis of genome-scale metabolic models
Henry, Christopher S, DeJongh, Matthew, Best, Aaron A, Frybarger, Paul M, Linsay, Ben, Stevens, Rick L
Published in Nature biotechnology (01.09.2010)
Published in Nature biotechnology (01.09.2010)
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Journal Article
Migrating bison engineer the green wave
Geremia, Chris, Merkle, Jerod A., Eacker, Daniel R., Wallen, Rick L., White, P. J., Hebblewhite, Mark, Kauffman, Matthew J.
Published in Proceedings of the National Academy of Sciences - PNAS (17.12.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (17.12.2019)
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Journal Article
Predicting tumor cell line response to drug pairs with deep learning
Xia, Fangfang, Shukla, Maulik, Brettin, Thomas, Garcia-Cardona, Cristina, Cohn, Judith, Allen, Jonathan E, Maslov, Sergei, Holbeck, Susan L, Doroshow, James H, Evrard, Yvonne A, Stahlberg, Eric A, Stevens, Rick L
Published in BMC bioinformatics (21.12.2018)
Published in BMC bioinformatics (21.12.2018)
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Journal Article
PATRIC, the bacterial bioinformatics database and analysis resource
Wattam, Alice R, Abraham, David, Dalay, Oral, Disz, Terry L, Driscoll, Timothy, Gabbard, Joseph L, Gillespie, Joseph J, Gough, Roger, Hix, Deborah, Kenyon, Ronald, Machi, Dustin, Mao, Chunhong, Nordberg, Eric K, Olson, Robert, Overbeek, Ross, Pusch, Gordon D, Shukla, Maulik, Schulman, Julie, Stevens, Rick L, Sullivan, Daniel E, Vonstein, Veronika, Warren, Andrew, Will, Rebecca, Wilson, Meredith J C, Yoo, Hyun Seung, Zhang, Chengdong, Zhang, Yan, Sobral, Bruno W
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models
Aziz, Ramy K, Devoid, Scott, Disz, Terrence, Edwards, Robert A, Henry, Christopher S, Olsen, Gary J, Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D, Stevens, Rick L, Vonstein, Veronika, Xia, Fangfang
Published in PloS one (24.10.2012)
Published in PloS one (24.10.2012)
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Journal Article
CRISPR-Cas9-mediated single-gene and gene family disruption in Trypanosoma cruzi
Peng, Duo, Kurup, Samarchith P, Yao, Phil Y, Minning, Todd A, Tarleton, Rick L
Published in mBio (30.12.2014)
Published in mBio (30.12.2014)
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Journal Article
Preoperative radiotherapy plus surgery versus surgery alone for patients with primary retroperitoneal sarcoma (EORTC-62092: STRASS): a multicentre, open-label, randomised, phase 3 trial
Bonvalot, Sylvie, Gronchi, Alessandro, Le Péchoux, Cécile, Swallow, Carol J, Strauss, Dirk, Meeus, Pierre, van Coevorden, Frits, Stoldt, Stephan, Stoeckle, Eberhard, Rutkowski, Piotr, Rastrelli, Marco, Raut, Chandrajit P, Hompes, Daphne, De Paoli, Antonino, Sangalli, Claudia, Honoré, Charles, Chung, Peter, Miah, Aisha, Blay, Jean Yves, Fiore, Marco, Stelmes, Jean-Jacques, Dei Tos, Angelo P, Baldini, Elizabeth H, Litière, Saskia, Marreaud, Sandrine, Gelderblom, Hans, Haas, Rick L
Published in The lancet oncology (01.10.2020)
Published in The lancet oncology (01.10.2020)
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Journal Article
Strategic Herding Behavior in Peer-to-Peer Loan Auctions
Herzenstein, Michal, Dholakia, Utpal M., Andrews, Rick L.
Published in Journal of interactive marketing (01.02.2011)
Published in Journal of interactive marketing (01.02.2011)
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