FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA
Liu, Yaping, Reed, Sarah C., Lo, Christopher, Choudhury, Atish D., Parsons, Heather A., Stover, Daniel G., Ha, Gavin, Gydush, Gregory, Rhoades, Justin, Rotem, Denisse, Freeman, Samuel, Katz, David W., Bandaru, Ravi, Zheng, Haizi, Fu, Hailu, Adalsteinsson, Viktor A., Kellis, Manolis
Published in Nature communications (30.03.2024)
Published in Nature communications (30.03.2024)
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Journal Article
Tumor fraction in cell-free DNA as a biomarker in prostate cancer
Choudhury, Atish D, Werner, Lillian, Francini, Edoardo, Wei, Xiao X, Ha, Gavin, Freeman, Samuel S, Rhoades, Justin, Reed, Sarah C, Gydush, Gregory, Rotem, Denisse, Lo, Christopher, Taplin, Mary-Ellen, Harshman, Lauren C, Zhang, Zhenwei, O'Connor, Edward P, Stover, Daniel G, Parsons, Heather A, Getz, Gad, Meyerson, Matthew, Love, J Christopher, Hahn, William C, Adalsteinsson, Viktor A
Published in JCI insight (02.11.2018)
Published in JCI insight (02.11.2018)
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Journal Article
Modeling clonal structure over narrow time frames via circulating tumor DNA in metastatic breast cancer
Weber, Zachary T, Collier, Katharine A, Tallman, David, Forman, Juliet, Shukla, Sachet, Asad, Sarah, Rhoades, Justin, Freeman, Samuel, Parsons, Heather A, Williams, Nicole O, Barroso-Sousa, Romualdo, Stover, Elizabeth H, Mahdi, Haider, Cibulskis, Carrie, Lennon, Niall J, Ha, Gavin, Adalsteinsson, Viktor A, Tolaney, Sara M, Stover, Daniel G
Published in Genome medicine (20.05.2021)
Published in Genome medicine (20.05.2021)
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Journal Article
Circulating Cell-Free DNA as Biomarker of Taxane Resistance in Metastatic Castration-Resistant Prostate Cancer
Francini, Edoardo, Ou, Fang-Shu, Rhoades, Justin, Wolfe, Eric G., O’Connor, Edward P., Ha, Gavin, Gydush, Gregory, Kelleher, Kaitlin M., Bhatt, Rupal S., Balk, Steven P., Sweeney, Christopher J., Adalsteinsson, Viktor A., Taplin, Mary-Ellen, Choudhury, Atish D.
Published in Cancers (12.08.2021)
Published in Cancers (12.08.2021)
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Comparison of whole‐genome and immunoglobulin‐based circulating tumor DNA assays in diffuse large B‐cell lymphoma
Merryman, Reid W., Rhoades, Justin, Xiong, Kan, Redd, Robert A., Antel, Katherine, An, Hyun Hwan, McDonough, Mikaela, Guerrero, Liliana, Crnjac, Andela, Sridhar, Sainetra, Blewett, Timothy, Cheng, Ju, Dahi, Parastoo B., Nieto, Yago, Joyce, Robin M., Chen, Yi‐Bin, Herrera, Alex F., Armand, Philippe, Murakami, Mark, Adalsteinsson, Viktor A.
Published in HemaSphere (01.04.2024)
Published in HemaSphere (01.04.2024)
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Association of Cell-Free DNA Tumor Fraction and Somatic Copy Number Alterations With Survival in Metastatic Triple-Negative Breast Cancer
Stover, Daniel G, Parsons, Heather A, Ha, Gavin, Freeman, Samuel S, Barry, William T, Guo, Hao, Choudhury, Atish D, Gydush, Gregory, Reed, Sarah C, Rhoades, Justin, Rotem, Denisse, Hughes, Melissa E, Dillon, Deborah A, Partridge, Ann H, Wagle, Nikhil, Krop, Ian E, Getz, Gad, Golub, Todd R, Love, J Christopher, Winer, Eric P, Tolaney, Sara M, Lin, Nancy U, Adalsteinsson, Viktor A
Published in Journal of clinical oncology (20.02.2018)
Published in Journal of clinical oncology (20.02.2018)
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Journal Article
Association of KMT2C loss-of-function mutations in circulating tumor DNA and prolonged response to the combination of PARPi and PI3Ki
Batalini, Felipe, Ke, Shizong, Liu, Ruolin, Blewett, Tim, Rhoades, Justin, Gulhan, Doga, Konstantinopoulos, Panagiotis A., Matulonis, Ursula A., Adalsteinsson, Viktor, Wulf, Gerburg M.
Published in Journal of clinical oncology (01.06.2023)
Published in Journal of clinical oncology (01.06.2023)
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Journal Article
MAESTRO-Pool Enables Highly Parallel and Specific Mutation-Enrichment Sequencing for Minimal Residual Disease Detection in Cohort Studies
Blewett, Timothy, Rhoades, Justin, Liu, Ruolin, Xiong, Kan, Sridhar, Sainetra, Crnjac, Andjela, Cheng, Ju, Lawless, Aleigha R, Frederick, Dennie T, Flaherty, Keith T, Makrigiorgos, Gerassimos Mike, Adalsteinsson, Viktor A
Published in Clinical chemistry (Baltimore, Md.) (07.02.2024)
Published in Clinical chemistry (Baltimore, Md.) (07.02.2024)
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Journal Article
Liquid biopsy detection of genomic alterations in pediatric brain tumors from cell-free DNA in peripheral blood, CSF, and urine
Pagès, Mélanie, Rotem, Denisse, Gydush, Gregory, Reed, Sarah, Rhoades, Justin, Ha, Gavin, Lo, Christopher, Fleharty, Mark, Duran, Madeleine, Jones, Robert, Becker, Sarah, Haller, Michaela, Sinai, Claire E, Goumnerova, Liliana, Golub, Todd R, Love, J Christopher, Ligon, Keith L, Wright, Karen D, Adalsteinsson, Viktor A, Beroukhim, Rameen, Bandopadhayay, Pratiti
Published in Neuro-oncology (Charlottesville, Va.) (01.08.2022)
Published in Neuro-oncology (Charlottesville, Va.) (01.08.2022)
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Journal Article
Priming agents transiently reduce the clearance of cell-free DNA to improve liquid biopsies
Martin-Alonso, Carmen, Tabrizi, Shervin, Xiong, Kan, Blewett, Timothy, Sridhar, Sainetra, Crnjac, Andjela, Patel, Sahil, An, Zhenyi, Bekdemir, Ahmet, Shea, Douglas, Wang, Shih-Ting, Rodriguez-Aponte, Sergio, Naranjo, Christopher A, Rhoades, Justin, Kirkpatrick, Jesse D, Fleming, Heather E, Amini, Ava P, Golub, Todd R, Love, J Christopher, Bhatia, Sangeeta N, Adalsteinsson, Viktor A
Published in Science (American Association for the Advancement of Science) (19.01.2024)
Published in Science (American Association for the Advancement of Science) (19.01.2024)
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Journal Article
Single duplex DNA sequencing with CODEC detects mutations with high sensitivity
Bae, Jin H., Liu, Ruolin, Roberts, Eugenia, Nguyen, Erica, Tabrizi, Shervin, Rhoades, Justin, Blewett, Timothy, Xiong, Kan, Gydush, Gregory, Shea, Douglas, An, Zhenyi, Patel, Sahil, Cheng, Ju, Sridhar, Sainetra, Liu, Mei Hong, Lassen, Emilie, Skytte, Anne-Bine, Grońska-Pęski, Marta, Shoag, Jonathan E., Evrony, Gilad D., Parsons, Heather A., Mayer, Erica L., Makrigiorgos, G. Mike, Golub, Todd R., Adalsteinsson, Viktor A.
Published in Nature genetics (01.05.2023)
Published in Nature genetics (01.05.2023)
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Journal Article
A Personalized Whole Genome-Informed Assay Targeting Single Mutant in Circulating Tumor DNA Can Identify MRD and Predict Relapse in DLBCL
Merryman, Reid W., Rhoades, Justin, Xiong, Kan, Antel, Katherine, An, Hyun Hwan, Redd, Robert A., McDonough, Mikaela M., Guerrero, Lillian, Crnjac, Andela, Sridhar, Sainetra, Blewett, Timothy, Chen, Ju, Dahi, Parastoo B., Nieto, Yago, Chen, Yi-Bin, Herrera, Alex F., Joyce, Robin M., Armand, Philippe, Murakami, Mark Alan, Adalsteinsson, Viktor
Published in Blood (02.11.2023)
Published in Blood (02.11.2023)
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Journal Article
Duplex-Repair enables highly accurate sequencing, despite DNA damage
Xiong, Kan, Shea, Douglas, Rhoades, Justin, Blewett, Timothy, Liu, Ruolin, Bae, Jin H, Nguyen, Erica, Makrigiorgos, G Mike, Golub, Todd R, Adalsteinsson, Viktor A
Published in Nucleic acids research (11.01.2022)
Published in Nucleic acids research (11.01.2022)
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Journal Article
Abstract PR06: Clonal evolution over narrow time frames via circulating tumor DNA in metastatic breast cancer
Weber, Zachary, Tallman, David, Stockaard, Sinclair, Collier, Katharine, Asad, Sarah, Rhoades, Justin, Freeman, Samuel, Parsons, Heather A., Tolaney, Sara M., Ha, Gavin, Adalsteinsson, Viktor A., Stover, Daniel G.
Published in Clinical cancer research (01.06.2020)
Published in Clinical cancer research (01.06.2020)
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Journal Article
Abstract PD9-08: Modeling clonal structure over narrow time frames via circulating tumor DNA in metastatic breast cancer
Stover, Daniel G, Collier, Katharine A, Tallman, David, Forman, Juliet, Shukla, Sachet, Asad, Sarah, Rhoades, Justin, Freeman, Samuel, Cherian, Mathew, Sardesai, Sagar, Barroso-Sousa, Romualdo, Cibulskis, Carrie, Lennon, Niall, Ha, Gavin, Tolaney, Sara M, Adalsteinsson, Viktor A, Weber, Zachary
Published in Cancer research (Chicago, Ill.) (15.02.2021)
Published in Cancer research (Chicago, Ill.) (15.02.2021)
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Journal Article
Circulating-free DNA (cfDNA) as biomarker of taxane resistance in metastatic castration-resistant prostate cancer (mCRPC)
Francini, Edoardo, Ou, Fang-Shu, Rhoades, Justin, Wolfe, Eric G., O'Connor, Edward, Ha, Gavin, Gregory, Gydush, Kelleher, Kaitlin, Bhatt, Rupal Satish, Balk, Steven P., Sweeney, Christopher, Adalsteinsson, Viktor, Taplin, Mary-Ellen, Choudhury, Atish Dipankar
Published in Journal of clinical oncology (20.02.2020)
Published in Journal of clinical oncology (20.02.2020)
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Journal Article
A Next Generation Liquid Biopsy Approach for Multiple Myeloma
Auclair, Daniel, Bustoros, MD, Mark, Cibulskis, Carrie, Dowdell, Teni, Gavrilov, Svetlana, Boehner, Cody J, Yesil, Jennifer, Labkoff, Steven E., Mehr, Shaadi, Sklavenitis-Pistofidis, Romanos, Manier, Salomon, Lightbody, Elizabeth D., Kim, Annette S., Rhoades, Justin, Ligon, Keith L, Lennon, Niall, Adalsteinsson, Viktor, Wilkinson, Jane, Cho, Hearn Jay, Ghobrial, Irene M.
Published in Blood (05.11.2020)
Published in Blood (05.11.2020)
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Abstract PR007: A liposomal priming agent increases the sensitivity of liquid biopsies
Martin-Alonso, Carmen, Tabrizi, Shervin, Xiong, Kan, Bekdemir, Ahmet Bekdemir, Patel, Sahil, An, Zhenyi, Blewett, Timothy, Sridhar, Sainetra, Shea, Douglas, Amini, Ava, Kirkpatrick, Jesse D., Bae, Jin, Roberts, Eugenia, Liu, Ruolin, Rhoades, Justin, Golub, Todd, Love, J. Christopher, Adalsteinsson, Viktor A., Bhatia, Sangeeta N.
Published in Cancer prevention research (Philadelphia, Pa.) (01.01.2023)
Published in Cancer prevention research (Philadelphia, Pa.) (01.01.2023)
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Journal Article
BIOM-04. SENSITIVE DETECTION OF LEPTOMENINGEAL DISEASE USING CELL-FREE DNA FROM CEREBROSPINAL FLUID
White, Michael, Klein, Robert, Shaw, Brian, Kim, Albert, Subramanian, Megha, Mora, Joana, Giobbie-Hurder, Anita, Nagabhushan, Deepika, Jain, Aarushi, Singh, Mohini, Kuter, Benjamin, Nayyar, Naema, Stocking, Jackson, Markson, Samuel, Lastrapes, Matthew, Alvarez-Breckenridge, Christopher, Cahill, Daniel, Mahar, Maura, Rhoades, Justin, Rotam, Denisse, Bertalan, Mia, Gydush, Greg, Adalsteinsson, Viktor, Kaplan, Alexander, Oh, Kevin, Sullivan, Ryan, Gerstner, Elizabeth, Carter, Scott, Brastianos, Priscilla
Published in Neuro-oncology (Charlottesville, Va.) (12.11.2021)
Published in Neuro-oncology (Charlottesville, Va.) (12.11.2021)
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