Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis
Li, Xiangjie, Wang, Kui, Lyu, Yafei, Pan, Huize, Zhang, Jingxiao, Stambolian, Dwight, Susztak, Katalin, Reilly, Muredach P, Hu, Gang, Li, Mingyao
Published in Nature communications (11.05.2020)
Published in Nature communications (11.05.2020)
Get full text
Journal Article
Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human
Pan, Huize, Xue, Chenyi, Auerbach, Benjamin J, Fan, Jiaxin, Bashore, Alexander C, Cui, Jian, Yang, Dina Y, Trignano, Sarah B, Liu, Wen, Shi, Jianting, Ihuegbu, Chinyere O, Bush, Erin C, Worley, Jeremy, Vlahos, Lukas, Laise, Pasquale, Solomon, Robert A, Connolly, Edward S, Califano, Andrea, Sims, Peter A, Zhang, Hanrui, Li, Mingyao, Reilly, Muredach P
Published in Circulation (New York, N.Y.) (24.11.2020)
Published in Circulation (New York, N.Y.) (24.11.2020)
Get full text
Journal Article
The ABO histo-blood group, endothelial activation, and acute respiratory distress syndrome risk in critical illness
Reilly, John P, Meyer, Nuala J, Shashaty, Michael Gs, Anderson, Brian J, Ittner, Caroline, Dunn, Thomas G, Lim, Brian, Forker, Caitlin, Bonk, Michael P, Kotloff, Ethan, Feng, Rui, Cantu, Edward, Mangalmurti, Nilam S, Calfee, Carolyn S, Matthay, Michael A, Mikacenic, Carmen, Walley, Keith R, Russell, James, Christiani, David C, Wurfel, Mark M, Lanken, Paul N, Reilly, Muredach P, Christie, Jason D
Published in The Journal of clinical investigation (01.01.2021)
Published in The Journal of clinical investigation (01.01.2021)
Get full text
Journal Article
Cholesterol Efflux Pathways Suppress Inflammasome Activation, NETosis, and Atherogenesis
Westerterp, Marit, Fotakis, Panagiotis, Ouimet, Mireille, Bochem, Andrea E, Zhang, Hanrui, Molusky, Matthew M, Wang, Wei, Abramowicz, Sandra, la Bastide-van Gemert, Sacha, Wang, Nan, Welch, Carrie L, Reilly, Muredach P, Stroes, Erik S, Moore, Kathryn J, Tall, Alan R
Published in Circulation (New York, N.Y.) (28.08.2018)
Published in Circulation (New York, N.Y.) (28.08.2018)
Get full text
Journal Article
ETD-Cleavable Linker for Confident Cross-linked Peptide Identifications
Zhao, Bingqing, Reilly, Colin P., Reilly, James P.
Published in Journal of the American Society for Mass Spectrometry (01.09.2019)
Published in Journal of the American Society for Mass Spectrometry (01.09.2019)
Get full text
Journal Article
ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing
Fan, Jiaxin, Hu, Jian, Xue, Chenyi, Zhang, Hanrui, Susztak, Katalin, Reilly, Muredach P, Xiao, Rui, Li, Mingyao
Published in PLoS genetics (11.05.2020)
Published in PLoS genetics (11.05.2020)
Get full text
Journal Article
Use of Multiple Ion Fragmentation Methods to Identify Protein Cross-Links and Facilitate Comparison of Data Interpretation Algorithms
Zhao, Bingqing, Reilly, Colin P, Davis, Caroline, Matouschek, Andreas, Reilly, James P
Published in Journal of proteome research (02.07.2020)
Published in Journal of proteome research (02.07.2020)
Get full text
Journal Article
PCSK9 is a critical regulator of the innate immune response and septic shock outcome
Walley, Keith R, Thain, Katherine R, Russell, James A, Reilly, Muredach P, Meyer, Nuala J, Ferguson, Jane F, Christie, Jason D, Nakada, Taka-aki, Fjell, Chris D, Thair, Simone A, Cirstea, Mihai S, Boyd, John H
Published in Science translational medicine (15.10.2014)
Published in Science translational medicine (15.10.2014)
Get more information
Journal Article
Circadian control of innate immunity in macrophages by miR-155 targeting Bmal1
Curtis, Anne M, Fagundes, Caio T, Yang, Guangrui, Palsson-McDermott, Eva M, Wochal, Paulina, McGettrick, Anne F, Foley, Niamh H, Early, James O, Chen, Lihong, Zhang, Hanrui, Xue, Chenyi, Geiger, Sarah S, Hokamp, Karsten, Reilly, Muredach P, Coogan, Andrew N, Vigorito, Elena, FitzGerald, Garret A, O'Neill, Luke A J
Published in Proceedings of the National Academy of Sciences - PNAS (09.06.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (09.06.2015)
Get full text
Journal Article
A guide to genome-wide association analysis and post-analytic interrogation
Reed, Eric, Nunez, Sara, Kulp, David, Qian, Jing, Reilly, Muredach P., Foulkes, Andrea S.
Published in Statistics in medicine (10.12.2015)
Published in Statistics in medicine (10.12.2015)
Get full text
Journal Article
The critical size of a defect in the glenoid causing anterior instability of the shoulder after a Bankart repair, under physiological joint loading
Klemt, C, Toderita, D, Nolte, D, Di Federico, E, Reilly, P, Bull, A M J
Published in The bone & joint journal (01.01.2019)
Published in The bone & joint journal (01.01.2019)
Get full text
Journal Article
Resistin is an inflammatory marker of atherosclerosis in humans
REILLY, Muredach P, LEHRKE, Michael, WOLFE, Megan L, ROHATGI, Anand, LAZAR, Mitchell A, RADER, Daniel J
Published in Circulation (New York, N.Y.) (22.02.2005)
Published in Circulation (New York, N.Y.) (22.02.2005)
Get full text
Journal Article
Relationship of Estimated GFR and Coronary Artery Calcification in the CRIC (Chronic Renal Insufficiency Cohort) Study
Budoff, Matthew J., MD, Rader, Daniel J., MD, Reilly, Muredach P., MD, Mohler, Emile R., MD, Lash, Jim, MD, Yang, Wei, PhD, Rosen, Leigh, MUEP, Glenn, Melanie, MPH, Teal, Valerie, MS, Feldman, Harold I., MD
Published in American journal of kidney diseases (01.10.2011)
Published in American journal of kidney diseases (01.10.2011)
Get full text
Journal Article
Population pharmacokinetic analysis of the oral thrombin inhibitor dabigatran etexilate in patients with non‐valvular atrial fibrillation from the RE‐LY trial
LIESENFELD, K.‐H., LEHR, T., DANSIRIKUL, C., REILLY, P. A., CONNOLLY, S. J., EZEKOWITZ, M. D., YUSUF, S., WALLENTIN, L., HAERTTER, S., STAAB, A.
Published in Journal of thrombosis and haemostasis (01.11.2011)
Published in Journal of thrombosis and haemostasis (01.11.2011)
Get full text
Journal Article
ABO blood type A is associated with increased risk of ARDS in whites following both major trauma and severe sepsis
Reilly, John P, Meyer, Nuala J, Shashaty, Michael G S, Feng, Rui, Lanken, Paul N, Gallop, Robert, Kaplan, Sandra, Herlim, Maximilian, Oz, Nathaniel L, Hiciano, Isabel, Campbell, Ana, Holena, Daniel N, Reilly, Muredach P, Christie, Jason D
Published in Chest (01.04.2014)
Published in Chest (01.04.2014)
Get more information
Journal Article
Distribution and medical impact of loss-of-function variants in the Finnish founder population
Lim, Elaine T, Würtz, Peter, Havulinna, Aki S, Palta, Priit, Tukiainen, Taru, Rehnström, Karola, Esko, Tõnu, Mägi, Reedik, Inouye, Michael, Lappalainen, Tuuli, Chan, Yingleong, Salem, Rany M, Lek, Monkol, Flannick, Jason, Sim, Xueling, Manning, Alisa, Ladenvall, Claes, Bumpstead, Suzannah, Hämäläinen, Eija, Aalto, Kristiina, Maksimow, Mikael, Salmi, Marko, Blankenberg, Stefan, Ardissino, Diego, Shah, Svati, Horne, Benjamin, McPherson, Ruth, Hovingh, Gerald K, Reilly, Muredach P, Watkins, Hugh, Goel, Anuj, Farrall, Martin, Girelli, Domenico, Reiner, Alex P, Stitziel, Nathan O, Kathiresan, Sekar, Gabriel, Stacey, Barrett, Jeffrey C, Lehtimäki, Terho, Laakso, Markku, Groop, Leif, Kaprio, Jaakko, Perola, Markus, McCarthy, Mark I, Boehnke, Michael, Altshuler, David M, Lindgren, Cecilia M, Hirschhorn, Joel N, Metspalu, Andres, Freimer, Nelson B, Zeller, Tanja, Jalkanen, Sirpa, Koskinen, Seppo, Raitakari, Olli, Durbin, Richard, MacArthur, Daniel G, Salomaa, Veikko, Ripatti, Samuli, Daly, Mark J, Palotie, Aarno
Published in PLoS genetics (01.07.2014)
Published in PLoS genetics (01.07.2014)
Get full text
Journal Article