Long fragments achieve lower base quality in Illumina paired-end sequencing
Tan, Ge, Opitz, Lennart, Schlapbach, Ralph, Rehrauer, Hubert
Published in Scientific reports (27.02.2019)
Published in Scientific reports (27.02.2019)
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Journal Article
An experimental genetically attenuated live vaccine to prevent transmission of Toxoplasma gondii by cats
Ramakrishnan, Chandra, Maier, Simone, Walker, Robert A., Rehrauer, Hubert, Joekel, Deborah E., Winiger, Rahel R., Basso, Walter U., Grigg, Michael E., Hehl, Adrian B., Deplazes, Peter, Smith, Nicholas C.
Published in Scientific reports (06.02.2019)
Published in Scientific reports (06.02.2019)
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Journal Article
A global network of coexisting microbes from environmental and whole-genome sequence data
Chaffron, Samuel, Rehrauer, Hubert, Pernthaler, Jakob, von Mering, Christian
Published in Genome research (01.07.2010)
Published in Genome research (01.07.2010)
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Journal Article
Circadian behavior is light-reprogrammed by plastic DNA methylation
Azzi, Abdelhalim, Dallmann, Robert, Casserly, Alison, Rehrauer, Hubert, Patrignani, Andrea, Maier, Bert, Kramer, Achim, Brown, Steven A
Published in Nature neuroscience (01.03.2014)
Published in Nature neuroscience (01.03.2014)
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Journal Article
SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis
Hatakeyama, Masaomi, Opitz, Lennart, Russo, Giancarlo, Qi, Weihong, Schlapbach, Ralph, Rehrauer, Hubert
Published in BMC bioinformatics (02.06.2016)
Published in BMC bioinformatics (02.06.2016)
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Journal Article
Epigenetically-driven anatomical diversity of synovial fibroblasts guides joint-specific fibroblast functions
Frank-Bertoncelj, Mojca, Trenkmann, Michelle, Klein, Kerstin, Karouzakis, Emmanuel, Rehrauer, Hubert, Bratus, Anna, Kolling, Christoph, Armaka, Maria, Filer, Andrew, Michel, Beat A., Gay, Renate E., Buckley, Christopher D., Kollias, George, Gay, Steffen, Ospelt, Caroline
Published in Nature communications (23.03.2017)
Published in Nature communications (23.03.2017)
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Journal Article
Non-Coding Transcript Heterogeneity in Mesothelioma: Insights from Asbestos-Exposed Mice
Felley-Bosco, Emanuela, Rehrauer, Hubert
Published in International journal of molecular sciences (11.04.2018)
Published in International journal of molecular sciences (11.04.2018)
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Journal Article
Intrinsic TGF-β signaling attenuates proximal tubule mitochondrial injury and inflammation in chronic kidney disease
Kayhan, Merve, Vouillamoz, Judith, Rodriguez, Daymé Gonzalez, Bugarski, Milica, Mitamura, Yasutaka, Gschwend, Julia, Schneider, Christoph, Hall, Andrew, Legouis, David, Akdis, Cezmi A., Peter, Leary, Rehrauer, Hubert, Gewin, Leslie, Wenger, Roland H., Khodo, Stellor Nlandu
Published in Nature communications (03.06.2023)
Published in Nature communications (03.06.2023)
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Journal Article
A Dual Role of Caspase-8 in Triggering and Sensing Proliferation-Associated DNA Damage, a Key Determinant of Liver Cancer Development
Boege, Yannick, Malehmir, Mohsen, Healy, Marc E., Bettermann, Kira, Lorentzen, Anna, Vucur, Mihael, Ahuja, Akshay K., Böhm, Friederike, Mertens, Joachim C., Shimizu, Yutaka, Frick, Lukas, Remouchamps, Caroline, Mutreja, Karun, Kähne, Thilo, Sundaravinayagam, Devakumar, Wolf, Monika J., Rehrauer, Hubert, Koppe, Christiane, Speicher, Tobias, Padrissa-Altés, Susagna, Maire, Renaud, Schattenberg, Jörn M., Jeong, Ju-Seong, Liu, Lei, Zwirner, Stefan, Boger, Regina, Hüser, Norbert, Davis, Roger J., Müllhaupt, Beat, Moch, Holger, Schulze-Bergkamen, Henning, Clavien, Pierre-Alain, Werner, Sabine, Borsig, Lubor, Luther, Sanjiv A., Jost, Philipp J., Weinlich, Ricardo, Unger, Kristian, Behrens, Axel, Hillert, Laura, Dillon, Christopher, Di Virgilio, Michela, Wallach, David, Dejardin, Emmanuel, Zender, Lars, Naumann, Michael, Walczak, Henning, Green, Douglas R., Lopes, Massimo, Lavrik, Inna, Luedde, Tom, Heikenwalder, Mathias, Weber, Achim
Published in Cancer cell (11.09.2017)
Published in Cancer cell (11.09.2017)
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In vivo cytidine base editing of hepatocytes without detectable off-target mutations in RNA and DNA
Villiger, Lukas, Rothgangl, Tanja, Witzigmann, Dominik, Oka, Rurika, Lin, Paulo J. C., Qi, Weihong, Janjuha, Sharan, Berk, Christian, Ringnalda, Femke, Beattie, Mitchell B., Stoffel, Markus, Thöny, Beat, Hall, Jonathan, Rehrauer, Hubert, van Boxtel, Ruben, Tam, Ying K., Schwank, Gerald
Published in Nature biomedical engineering (01.02.2021)
Published in Nature biomedical engineering (01.02.2021)
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Journal Article
How asbestos drives the tissue towards tumors: YAP activation, macrophage and mesothelial precursor recruitment, RNA editing, and somatic mutations
Rehrauer, Hubert, Wu, Licun, Blum, Walter, Pecze, Lazslo, Henzi, Thomas, Serre-Beinier, Véronique, Aquino, Catherine, Vrugt, Bart, de Perrot, Marc, Schwaller, Beat, Felley-Bosco, Emanuela
Published in Oncogene (01.05.2018)
Published in Oncogene (01.05.2018)
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Journal Article
MicroRNA MiR-199a-5p Regulates Smooth Muscle Cell Proliferation and Morphology by Targeting WNT2 Signaling Pathway
Hashemi Gheinani, Ali, Burkhard, Fiona C., Rehrauer, Hubert, Aquino Fournier, Catharine, Monastyrskaya, Katia
Published in The Journal of biological chemistry (13.03.2015)
Published in The Journal of biological chemistry (13.03.2015)
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Myc-mediated repression of microRNA-34a promotes high-grade transformation of B-cell lymphoma by dysregulation of FoxP1
Craig, Vanessa J., Cogliatti, Sergio B., Imig, Jochen, Renner, Christoph, Neuenschwander, Stefan, Rehrauer, Hubert, Schlapbach, Ralph, Dirnhofer, Stephan, Tzankov, Alexander, Müller, Anne
Published in Blood (09.06.2011)
Published in Blood (09.06.2011)
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Journal Article
H. pylori-Induced DNA Strand Breaks Are Introduced by Nucleotide Excision Repair Endonucleases and Promote NF-κB Target Gene Expression
Hartung, Mara L., Gruber, Dorothea C., Koch, Katrin N., Grüter, Livia, Rehrauer, Hubert, Tegtmeyer, Nicole, Backert, Steffen, Müller, Anne
Published in Cell reports (Cambridge) (06.10.2015)
Published in Cell reports (Cambridge) (06.10.2015)
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Journal Article
Epigenetic Silencing of MicroRNA-203 Dysregulates ABL1 Expression and Drives Helicobacter-Associated Gastric Lymphomagenesis
CRAIG, Vanessa J, COGLIATTI, Sergio B, REHRAUER, Hubert, WÜNDISCH, Thomas, MÜLLER, Anne
Published in Cancer research (Chicago, Ill.) (15.05.2011)
Published in Cancer research (Chicago, Ill.) (15.05.2011)
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Journal Article
Multiomic ALS signatures highlight subclusters and sex differences suggesting the MAPK pathway as therapeutic target
Caldi Gomes, Lucas, Hänzelmann, Sonja, Hausmann, Fabian, Khatri, Robin, Oller, Sergio, Parvaz, Mojan, Tzeplaeff, Laura, Pasetto, Laura, Gebelin, Marie, Ebbing, Melanie, Holzapfel, Constantin, Columbro, Stefano Fabrizio, Scozzari, Serena, Knöferle, Johanna, Cordts, Isabell, Demleitner, Antonia F., Deschauer, Marcus, Dufke, Claudia, Sturm, Marc, Zhou, Qihui, Zelina, Pavol, Sudria-Lopez, Emma, Haack, Tobias B., Streb, Sebastian, Kuzma-Kozakiewicz, Magdalena, Edbauer, Dieter, Pasterkamp, R. Jeroen, Laczko, Endre, Rehrauer, Hubert, Schlapbach, Ralph, Carapito, Christine, Bonetto, Valentina, Bonn, Stefan, Lingor, Paul
Published in Nature communications (07.06.2024)
Published in Nature communications (07.06.2024)
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