Abstract 2725: Molecular mechanisms of aberrant splicing in pediatric high grade gliomas
Naqvi, Ammar S., Ennis, Brian, Jin, Run, Conkrite, Karina L., Rathi, Komal S., Kraya, Adam A., Sonawane, Poonam, Storm, Phillip B., Resnick, Adam C., Rokita, Jo Lynne
Published in Cancer research (Chicago, Ill.) (15.06.2022)
Published in Cancer research (Chicago, Ill.) (15.06.2022)
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Journal Article
Synthesis of a Zirconium Complex of an N,O‑type p-tert-Butylcalix[4]arene and Its Application in Some Multicomponent Reactions
Rawat, Varun, Vigalok, Arkadi, Sinha, Anshu Kumar, Sachdeva, Garima, Srivastava, Chandra Mohan, Rao, Gyandshwar K., Kumar, Arun, Singh, Mandeep, Rathi, Komal, Verma, Ved Prakash, Yadav, Bhupender, Pandey, Amit Kumar, Vats, Monika
Published in ACS omega (16.08.2022)
Published in ACS omega (16.08.2022)
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Journal Article
OMIC-14. OPENPBTA: AN OPEN PEDIATRIC BRAIN TUMOR ATLAS
Shapiro, Joshua, Savonen, Candace, Bethell, Chante, Gaonkar, Krutika, Zhu, Yuankun, Brown, Miguel, Duong, Nhat, Rathi, Komal, Noureen, Nighat, Zhang, Bo, Ennis, Brian, Spielman, Stephanie, Farrow, Bailey, Van Kuren, Nicolas, Koganti, Tejaswi, Kannan, Shrivats, Raman, Pichai, Miller, Daniel, Jain, Payal, Guo, Yiran, Huang, Xiaoyan, Kraya, Adam, Heath, Allison, Koptyra, Mateusz, Wong, Jessica, Mason, Jennifer, Robbins, Shannon, Santi, Mariarita, Viaene, Angela, Waanders, Angela, Hanson, Derek, Scolaro, Laura, Xie, Hongbo, Zheng, Siyuan, Kline, Cassie, Lilly, Jena, Storm, Philip, Resnick, Adam, Rokita, Jo Lynne, Greene, Casey, Taroni, Jaclyn
Published in Neuro-oncology (Charlottesville, Va.) (01.06.2021)
Published in Neuro-oncology (Charlottesville, Va.) (01.06.2021)
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Journal Article
Abstract 5200: Multiparametric MRI along with machine learning informs on molecular underpinnings, prognosis, and treatment response in pediatric low grade glioma
Nabavizadeh, Ali, Kraya, Adam, Rathi, Komal, Kim, Meen Chul, Khalili, Nastaran, Familiar, Ariana, Kesherwani, Varun, Anderson, Hannah, Gandhi, Deep, Mahtabfar, Aria, Bagheri, Sina, Huang, Xiaoyan, Zhu, Yuankun, Sickler, Alexander, Phul, Saksham, Mueller, Sabine, Koptyra, Mateusz P, Storm, Philip B, Ware, Jeff, Song, Yuanquan, Fisher, Michael J, Vossough, Arastoo, Davatzikos, Christos, Resnick, Adam C, Kazerooni, Anahita Fathi
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Published in Cancer research (Chicago, Ill.) (22.03.2024)
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Journal Article
Abstract 5105: Aberrant CLK1 splicing is a key dependency factor in pediatric high-grade gliomas
Naqvi, Ammar S., Seghal, Priyanka, Corbett, Ryan, Rathi, Komal, Ennis, Brian, Zhang, Bo, Brown, Miguel, Miller, Daniel, Kraya, Adam, Dybas, Joseph, Hayer, Katharina, Arif, Shehbeel, Geng, Zhuangzhuang, Chroni, Antonia, Lahiri, Aditya, Conkrite, Karina, Hollawell, Madison, Diskin, Sharon, Madsen, Peter, Foster, Jessica B., Koptyra, Mateusz P., Thomas-Tikhonenko, Andrei, Resnick, Adam, Storm, Phillip J., Rokita, Jo Lynne
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Published in Cancer research (Chicago, Ill.) (22.03.2024)
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Journal Article
TBIO-29. PedcBioPortal, A CANCER DATA VISUALIZATION TOOL FOR INTEGRATIVE PEDIATRIC CANCER ANALYSES
Raman, Pichai, Rathi, Komal, Kalletla, Karthik, Zhu, Yuankun, Zhang, Bo, Schultz, Nikolaus, Cerami, Ethan, Mackay, Alan, Jones, Chris, Mueller, Sabine, Nazarian, Javad, Maris, John M, Storm, Phillip B, Waanders, Angela J, Resnick, Adam C
Published in Neuro-oncology (Charlottesville, Va.) (22.06.2018)
Published in Neuro-oncology (Charlottesville, Va.) (22.06.2018)
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Journal Article
Abstract 685: GPC2 is an oncogene and immunotherapeutic target in high-risk neuroblastoma
Bosse, Kristopher R., Raman, Pichai, Lane, Maria, Sussman, Robyn T., Harenza, Jo Lynne, Martinez, Daniel, Heitzeneder, Sabine, Zhu, Zhongyu, Rathi, Komal, Randall, Michael, Donovan, Laura, Morrissy, Sorana, Zhelev, Doncho V., Feng, Yang, Hwang, Jennifer, Wang, Yanping, Pawel, Bruce, Bhatti, Tricia, Santi, Mariarita, Khan, Javed, Taylor, Michael, Dimitrov, Dimiter S., Mackall, Crystal, Maris, John M.
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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Journal Article
Abstract 3955: A proteogenomic study of high-grade glioma among adolescents and young adults
Tignor, Nicole, Koptyra, Mateusz P., Chowdhury, Shrabanti, Ma, Weiping, Rokita, Jo Lynne, Gritsenko, Marina, Song, Xiaoyu, Marino, Giacomo B., Deng, Eden Z., Petralia, Francesca, Krek, Azra, Rykunov, Dmitry, Leprevost, Felipe da Veiga, Hosseini, Noshad, Rathi, Komal S., Hu, Yingwei, Migliozzi, Simona, Yaron, Tomer, Fu, Weijia, Zhang, Bo, Zhu, Yuankun, Brown, Miguel A., Whiteaker, Jeffrey R., Mesri, Mehdi, Robles, Ana I., Rodland, Karin, Cantley, Lewis C., Iavarone, Antonio, Aldape, Kenneth, Cieślik, Marcin, Nesvizhskii, Alexey I., Ippolito, Joseph E., Rubin, Joshua B., Paulovich, Amanda G., Zhang, Hui, Ma'ayan, Avi, Liu, Tao, Storm, Phillip B., Resnick, Adam C., Rood, Brian R., Wang, Pei
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Published in Cancer research (Chicago, Ill.) (22.03.2024)
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Journal Article
OpenPBTA: The Open Pediatric Brain Tumor Atlas
Shapiro, Joshua A., Gaonkar, Krutika S., Spielman, Stephanie J., Savonen, Candace L., Bethell, Chante J., Jin, Run, Rathi, Komal S., Zhu, Yuankun, Egolf, Laura E., Farrow, Bailey K., Miller, Daniel P., Yang, Yang, Koganti, Tejaswi, Noureen, Nighat, Koptyra, Mateusz P., Duong, Nhat, Santi, Mariarita, Kim, Jung, Robins, Shannon, Storm, Phillip B., Mack, Stephen C., Lilly, Jena V., Xie, Hongbo M., Jain, Payal, Raman, Pichai, Rood, Brian R., Lulla, Rishi R., Nazarian, Javad, Kraya, Adam A., Vaksman, Zalman, Heath, Allison P., Kline, Cassie, Scolaro, Laura, Viaene, Angela N., Huang, Xiaoyan, Way, Gregory P., Foltz, Steven M., Zhang, Bo, Poetsch, Anna R., Mueller, Sabine, Ennis, Brian M., Prados, Michael, Diskin, Sharon J., Zheng, Siyuan, Guo, Yiran, Kannan, Shrivats, Waanders, Angela J., Margol, Ashley S., Kim, Meen Chul, Hanson, Derek, Van Kuren, Nicholas, Wong, Jessica, Kaufman, Rebecca S., Coleman, Noel, Blackden, Christopher, Cole, Kristina A., Mason, Jennifer L., Madsen, Peter J., Koschmann, Carl J., Stewart, Douglas R., Wafula, Eric, Brown, Miguel A., Resnick, Adam C., Greene, Casey S., Rokita, Jo Lynne, Taroni, Jaclyn N.
Published in Cell genomics (12.07.2023)
Published in Cell genomics (12.07.2023)
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Journal Article
NASA GeneLab RNA-seq consensus pipeline: Standardized processing of short-read RNA-seq data
Overbey, Eliah G., Saravia-Butler, Amanda M., Zhang, Zhe, Rathi, Komal S., Fogle, Homer, da Silveira, Willian A., Barker, Richard J., Bass, Joseph J., Beheshti, Afshin, Berrios, Daniel C., Blaber, Elizabeth A., Cekanaviciute, Egle, Costa, Helio A., Davin, Laurence B., Fisch, Kathleen M., Gebre, Samrawit G., Geniza, Matthew, Gilbert, Rachel, Gilroy, Simon, Hardiman, Gary, Herranz, Raúl, Kidane, Yared H., Kruse, Colin P.S., Lee, Michael D., Liefeld, Ted, Lewis, Norman G., McDonald, J. Tyson, Meller, Robert, Mishra, Tejaswini, Perera, Imara Y., Ray, Shayoni, Reinsch, Sigrid S., Rosenthal, Sara Brin, Strong, Michael, Szewczyk, Nathaniel J., Tahimic, Candice G.T., Taylor, Deanne M., Vandenbrink, Joshua P., Villacampa, Alicia, Weging, Silvio, Wolverton, Chris, Wyatt, Sarah E., Zea, Luis, Costes, Sylvain V., Galazka, Jonathan M.
Published in iScience (23.04.2021)
Published in iScience (23.04.2021)
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Journal Article
PRIMA-1 MET -induced neuroblastoma cell death is modulated by p53 and mycn through glutathione level
Mlakar, Vid, Jurkovic Mlakar, Simona, Lesne, Laurence, Marino, Denis, Rathi, Komal S, Maris, John M, Ansari, Marc, Gumy-Pause, Fabienne
Published in Journal of experimental & clinical cancer research (12.02.2019)
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Published in Journal of experimental & clinical cancer research (12.02.2019)
Journal Article
Characterization of aberrant splicing in pediatric central nervous system tumors reveals CLK1 as a candidate oncogenic dependency
Naqvi, Ammar S, Corbett, Ryan J, Seghal, Priyanka, Conkrite, Karina L, Rathi, Komal S, Ennis, Brian M, Hayer, Katharina E, Zhang, Bo, Brown, Miguel A, Miller, Daniel P, Kraya, Adam A, Dybas, Joseph M, Geng, Zhuangzhuang, Blackden, Christopher, Arif, Shehbeel, Chroni, Antonia, Lahiri, Aditya, Hollawell, Madison L, Storm, Phillip B, Foster, Jessica B, Koptyra, Mateusz, Madsen, Peter J, Diskin, Sharon J, Thomas-Tikhonenko, Andrei, Resnick, Adam C, Rokita, Jo Lynne
Published in bioRxiv (22.08.2024)
Published in bioRxiv (22.08.2024)
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Journal Article
The splicing modulator CLK1 is a candidate oncogenic dependency in pediatric high-grade gliomas
Naqvi, Ammar S., Corbett, Ryan J., Seghal, Priyanka, Conkrite, Karina L., Rathi, Komal S., Ennis, Brian M., Hayer, Katharina E, Zhang, Bo, Brown, Miguel A., Miller, Daniel P., Kraya, Adam A., Dybas, Joseph M., Geng, Zhuangzhuang, Blackden, Christopher, Arif, Shehbeel, Chroni, Antonia, Lahiri, Aditya, Hollawell, Madison L., Storm, Phillip B., Foster, Jessica B., Koptyra, Mateusz, Madsen, Peter J., Diskin, Sharon J., Thomas-Tikhonenko, Andrei, Resnick, Adam C., Rokita, Jo Lynne
Published in bioRxiv (06.08.2024)
Published in bioRxiv (06.08.2024)
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Journal Article
A proteogenomic surfaceome study identifies DLK1 as an immunotherapeutic target in neuroblastoma
Weiner, Amber K, Radaoui, Alexander B, Tsang, Matthew, Martinez, Daniel, Sidoli, Simone, Conkrite, Karina L, Delaidelli, Alberto, Modi, Apexa, Rokita, Jo Lynne, Patel, Khushbu, Lane, Maria V, Zhang, Bo, Zhong, Chuwei, Ennis, Brian, Miller, Daniel P, Brown, Miguel A, Rathi, Komal S, Raman, Pichai, Pogoriler, Jennifer, Bhatti, Tricia, Pawel, Bruce, Glisovic-Aplenc, Tina, Teicher, Beverly, Erickson, Stephen W, Earley, Eric J, Bosse, Kristopher R, Sorensen, Poul H, Krytska, Kateryna, Mosse, Yael P, Havenith, Karin E, Zammarchi, Francesca, van Berkel, Patrick H, Smith, Malcolm A, Garcia, Benjamin A, Maris, John M, Diskin, Sharon J
Published in bioRxiv : the preprint server for biology (07.01.2024)
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Published in bioRxiv : the preprint server for biology (07.01.2024)
Journal Article
Development of GPC2-directed chimeric antigen receptors using mRNA for pediatric brain tumors
Foster, Jessica B, Griffin, Crystal, Rokita, Jo Lynne, Stern, Allison, Brimley, Cameron, Rathi, Komal, Lane, Maria V, Buongervino, Samantha N, Smith, Tiffany, Madsen, Peter J, Martinez, Daniel, Wechsler-Reya, Robert, Kariko, Katalin, Storm, Phillip B, Barrett, David M, Resnick, Adam C, Maris, John M, Bosse, Kristopher R
Published in bioRxiv (26.08.2021)
Published in bioRxiv (26.08.2021)
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MYC controls metastatic heterogeneity in pancreatic cancer
Maddipati, Ravikanth, Norgard, Robert J, Baslan, Timour, Rathi, Komal S, Zhang, Amy, Raman, Pichai, Pitarresi, Jason R, Wengyn, Maximilian D, Yamazoe, Taiji, Li, Jinyang, Balli, David, Lariviere, Michael J, Folkert, Ian W, Millstein, Ian D, Bermeo, Jonathan, Carpenter, Erica L, Lowe, Scott, Iacobuzio-Donahue, Christine, Notta, Faiyaz, Stanger, Ben Z
Published in bioRxiv (01.02.2021)
Published in bioRxiv (01.02.2021)
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OpenPBTA: An Open Pediatric Brain Tumor Atlas
Shapiro, Joshua A, Gaonkar, Krutika S, Savonen, Candace L, Spielman, Stephanie J, Bethell, Chante J, Jin, Run, Rathi, Komal S, Zhu, Yuankun, Egolf, Laura E, Farrow, Bailey K, Miller, Daniel P, Yang, Yang, Koganti, Tejaswi, Noureen, Nighat, Koptyra, Mateusz P, Duong, Nhat, Kraya, Adam A, Kline, Cassie N, Guo, Yiran, Storm, Phillip B, Nazarian, Javad, Mack, Stephen C, Raman, Pichai, Zheng, Siyuan, Madsen, Peter J, Nicholas Van Kuren, Robins, Shannon, Huang, Xiaoyan, Waanders, Angela J, Jung, Kim, Hanson, Derek, Koschmann, Carl J, Diskin, Sharon J, Lulla, Rishi R, Brown, Miguel A, Wong, Jessica, Mason, Jennifer L, Scolaro, Laura, Kim, Meen Chul, Xie, Hongbo M, Rood, Brian R, Cole, Kristina A, Margol, Ashley S, Vaksman, Zalman, Kaufman, Rebecca S, Heath, Allison P, Ennis, Brian M, Santi, Mariarita, Poetsch, Anna R, Viaene, Angela N, Stewart, Douglas R, Foltz, Steven M, Jain, Payal, Zhang, Bo, Kannan, Shrivats, Prados, Michael, Lilly, Jena V, Mueller, Sabine, Resnick, Adam C, Greene, Casey S, Rokita, Jo Lynne, Taroni, Jaclyn N, Children's Brain Tumor Network, Pacific Pediatric Neuro-Oncology Consortium
Published in bioRxiv (16.09.2022)
Published in bioRxiv (16.09.2022)
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annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions
Gaonkar, Krutika S, Marini, Federico, Rathi, Komal S, Jain, Payal, Zhu, Yuankun, Chimicles, Nicholas A, Brown, Miguel A, Naqvi, Ammar S, Zhang, Bo, Storm, Phillip B, Maris, John M, Raman, Pichai, Resnick, Adam C, Strauch, Konstantin, Taroni, Jaclyn N, Rokita, Jo Lynne
Published in bioRxiv (19.09.2020)
Published in bioRxiv (19.09.2020)
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Paper
LIN28B-PDZ Binding Kinase Signaling Promotes Neuroblastoma Metastasis
Chen, Dongdong, Cox, Julie, Annam, Jayabhargav, Weingart, Melanie, Essien, Grace, Rathi, Komal S, Rokita, Jo Lynne, Khurana, Priya, Cuya, Selma M, Bosse, Kristopher R, Pilgrim, Adeiye, Li, Daisy, Maris, John M, Schnepp, Robert W
Published in bioRxiv (21.08.2019)
Published in bioRxiv (21.08.2019)
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Single-cell transcriptomic profile reveals macrophage heterogeneity in medulloblastoma and their treatment-dependent recruitment
Dang, Mai T, Gonzalez, Michael, Gaonkar, Krutika S, Rathi, Komal S, Young, Patricia, Sherjeel Arif, Zhai, Li, Alam, Md, Devalaraja, Samir, To Tsun, Folkert, Ian, Raman, Pichai, Rokita, Jo Lynne, Martinez, Daniel, Taroni, Jaclyn, Shapiro, Joshua, Greene, Casey S, Savonen, Candace, Hakonarson, Hakon, Curran, Tom, Haldar, Malay
Published in bioRxiv (13.02.2020)
Published in bioRxiv (13.02.2020)
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