Highly accurate long-read HiFi sequencing data for five complex genomes
Hon, Ting, Mars, Kristin, Young, Greg, Tsai, Yu-Chih, Karalius, Joseph W., Landolin, Jane M., Maurer, Nicholas, Kudrna, David, Hardigan, Michael A., Steiner, Cynthia C., Knapp, Steven J., Ware, Doreen, Shapiro, Beth, Peluso, Paul, Rank, David R.
Published in Scientific data (17.11.2020)
Published in Scientific data (17.11.2020)
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Long-read, whole-genome shotgun sequence data for five model organisms
Kim, Kristi E, Peluso, Paul, Babayan, Primo, Yeadon, P. Jane, Yu, Charles, Fisher, William W, Chin, Chen-Shan, Rapicavoli, Nicole A, Rank, David R, Li, Joachim, Catcheside, David E. A, Celniker, Susan E, Phillippy, Adam M, Bergman, Casey M, Landolin, Jane M
Published in Scientific data (25.11.2014)
Published in Scientific data (25.11.2014)
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Phased diploid genome assembly with single-molecule real-time sequencing
Chin, Chen-Shan, Peluso, Paul, Sedlazeck, Fritz J, Nattestad, Maria, Concepcion, Gregory T, Clum, Alicia, Dunn, Christopher, O'Malley, Ronan, Figueroa-Balderas, Rosa, Morales-Cruz, Abraham, Cramer, Grant R, Delledonne, Massimo, Luo, Chongyuan, Ecker, Joseph R, Cantu, Dario, Rank, David R, Schatz, Michael C
Published in Nature methods (01.12.2016)
Published in Nature methods (01.12.2016)
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Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
Wenger, Aaron M., Peluso, Paul, Rowell, William J., Chang, Pi-Chuan, Hall, Richard J., Concepcion, Gregory T., Ebler, Jana, Fungtammasan, Arkarachai, Kolesnikov, Alexey, Olson, Nathan D., Töpfer, Armin, Alonge, Michael, Mahmoud, Medhat, Qian, Yufeng, Chin, Chen-Shan, Phillippy, Adam M., Schatz, Michael C., Myers, Gene, DePristo, Mark A., Ruan, Jue, Marschall, Tobias, Sedlazeck, Fritz J., Zook, Justin M., Li, Heng, Koren, Sergey, Carroll, Andrew, Rank, David R., Hunkapiller, Michael W.
Published in Nature biotechnology (01.10.2019)
Published in Nature biotechnology (01.10.2019)
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Improved maize reference genome with single-molecule technologies
Jiao, Yinping, Peluso, Paul, Shi, Jinghua, Liang, Tiffany, Stitzer, Michelle C., Wang, Bo, Campbell, Michael S., Stein, Joshua C., Wei, Xuehong, Chin, Chen-Shan, Guill, Katherine, Regulski, Michael, Kumari, Sunita, Olson, Andrew, Gent, Jonathan, Schneider, Kevin L., Wolfgruber, Thomas K., May, Michael R., Springer, Nathan M., Antoniou, Eric, McCombie, W. Richard, Presting, Gernot G., McMullen, Michael, Ross-Ibarra, Jeffrey, Dawe, R. Kelly, Hastie, Alex, Rank, David R., Ware, Doreen
Published in Nature (London) (22.06.2017)
Published in Nature (London) (22.06.2017)
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flexible and efficient template format for circular consensus sequencing and SNP detection
Travers, Kevin J, Chin, Chen-Shan, Rank, David R, Eid, John S, Turner, Stephen W
Published in Nucleic acids research (01.08.2010)
Published in Nucleic acids research (01.08.2010)
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EDGE: A Centralized Resource for the Comparison, Analysis, and Distribution of Toxicogenomic Information
Hayes, Kevin R, Vollrath, Aaron L, Zastrow, Gina M, McMillan, Brian J, Craven, Mark, Jovanovich, Stevan, Rank, David R, Penn, Sharon, Walisser, Jacqueline A, Reddy, Janardan K, Thomas, Russell S, Bradfield, Christopher A
Published in Molecular pharmacology (01.04.2005)
Published in Molecular pharmacology (01.04.2005)
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Chromosome-level genome assemblies of 2 hemichordates provide new insights into deuterostome origin and chromosome evolution
Lin, Che-Yi, Marlétaz, Ferdinand, Pérez-Posada, Alberto, Martínez-García, Pedro Manuel, Schloissnig, Siegfried, Peluso, Paul, Conception, Greg T, Bump, Paul, Chen, Yi-Chih, Chou, Cindy, Lin, Ching-Yi, Fan, Tzu-Pei, Tsai, Chang-Tai, Gómez Skarmeta, José Luis, Tena, Juan J, Lowe, Christopher J, Rank, David R, Rokhsar, Daniel S, Yu, Jr-Kai, Su, Yi-Hsien
Published in PLoS biology (03.06.2024)
Published in PLoS biology (03.06.2024)
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Identification of toxicologically predictive gene sets using cDNA microarrays
Thomas, R S, Rank, D R, Penn, S G, Zastrow, G M, Hayes, K R, Pande, K, Glover, E, Silander, T, Craven, M W, Reddy, J K, Jovanovich, S B, Bradfield, C A
Published in Molecular pharmacology (01.12.2001)
Published in Molecular pharmacology (01.12.2001)
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Journal Article
Application of Genomics to Toxicology Research
Thomas, Russell S., Rank, David R., Penn, Sharron G., Zastrow, Gina M., Hayes, Kevin R., Hu, Tianhua, Pande, Kalyan, Lewis, Mark, Jovanovich, Stevan B., Bradfield, Christopher A.
Published in Environmental health perspectives (01.12.2002)
Published in Environmental health perspectives (01.12.2002)
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Mining the human genome using microarrays of open reading frames
Rank, David R, Penn, Sharron G, Hanzel, David K, Barker, David L
Published in Nature genetics (01.11.2000)
Published in Nature genetics (01.11.2000)
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A conditional density error model for the statistical analysis of microarray data
LOVE, Brad, RANK, David R, PENN, Sharron G, JENKINS, David A, THOMAS, Russell S
Published in Bioinformatics (Oxford, England) (01.08.2002)
Published in Bioinformatics (Oxford, England) (01.08.2002)
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Sequence variation and phylogenetic history of the mouse Ahr gene
Thomas, Russell S, Penn, Sharron G, Holden, Kevin, Bradfield, Christopher A, Rank, David R
Published in Pharmacogenetics (London) (01.03.2002)
Published in Pharmacogenetics (London) (01.03.2002)
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Sub-microliter DNA sequencing for capillary array electrophoresis
Hadd, Andrew G, Goard, Michael P, Rank, David R, Jovanovich, Stevan B
Published in Journal of Chromatography A (13.10.2000)
Published in Journal of Chromatography A (13.10.2000)
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Journal Article
Conference Proceeding
Highly-accurate long-read sequencing improves variant detection and assembly of a human genome
Wenger, Aaron M, Peluso, Paul, Rowell, William J, Pi-Chuan Chang, Hall, Richard J, Concepcion, Gregory T, Ebler, Jana, Fungtammasan, Arkarachai, Kolesnikov, Alexey, Olson, Nathan D, Toepfer, Armin, Chen-Shan, Chin, Alonge, Michael, Mahmoud, Medhat, Qian, Yufeng, Phillippy, Adam M, Schatz, Michael C, Myers, Gene, Depristo, Mark A, Ruan, Jue, Marschall, Tobias, Sedlazeck, Fritz J, Zook, Justin M, Li, Heng, Koren, Sergey, Carroll, Andrew, Rank, David R, Hunkapiller, Michael W
Published in bioRxiv (13.01.2019)
Published in bioRxiv (13.01.2019)
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Paper
A conditional density error model for the statisticalanalysis of microarray data
Love, Brad, Rank, David R., Penn, Sharron G., Jenkins, David A., Thomas, Russell S.
Published in Bioinformatics (01.08.2002)
Published in Bioinformatics (01.08.2002)
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Polymerases for nucleotide analogue incorporation
Hanzel, David K, Rank, David R, Clark, Sonya, Park, Insil, Peluso, Paul S, Bibillo, Arekadiusz, Lyle, John, Christians, Fred, Otto, Geoff, Pham, Thang
Year of Publication 12.04.2022
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Year of Publication 12.04.2022
Patent
ARTICLES HAVING LOCALIZED MOLECULES DISPOSED THEREON AND METHODS OF PRODUCING SAME
Turner, Stephen, Rank, David R, Korlach, Jonas, Roitman, Daniel, Xu, Yue, Peluso, Paul, Cicero, Ron L, Lyle, John, Wegener, Jeffery, Otto, Geoff
Year of Publication 31.03.2022
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Year of Publication 31.03.2022
Patent