RaGOO: fast and accurate reference-guided scaffolding of draft genomes
Alonge, Michael, Soyk, Sebastian, Ramakrishnan, Srividya, Wang, Xingang, Goodwin, Sara, Sedlazeck, Fritz J, Lippman, Zachary B, Schatz, Michael C
Published in Genome Biology (28.10.2019)
Published in Genome Biology (28.10.2019)
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Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes
Hunt, Martin, Letcher, Brice, Malone, Kerri M, Nguyen, Giang, Hall, Michael B, Colquhoun, Rachel M, Lima, Leandro, Schatz, Michael C, Ramakrishnan, Srividya, Iqbal, Zamin
Published in Genome Biology (05.07.2022)
Published in Genome Biology (05.07.2022)
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Journal Article
A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor
Vornhagen, Jay, Bassis, Christine M, Ramakrishnan, Srividya, Hein, Robert, Mason, Sophia, Bergman, Yehudit, Sunshine, Nicole, Fan, Yunfan, Holmes, Caitlyn L, Timp, Winston, Schatz, Michael C, Young, Vincent B, Simner, Patricia J, Bachman, Michael A
Published in PLoS pathogens (30.04.2021)
Published in PLoS pathogens (30.04.2021)
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Journal Article
Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library
Hulse-Kemp, Amanda M., Maheshwari, Shamoni, Stoffel, Kevin, Hill, Theresa A., Jaffe, David, Williams, Stephen R., Weisenfeld, Neil, Ramakrishnan, Srividya, Kumar, Vijay, Shah, Preyas, Schatz, Michael C., Church, Deanna M., Van Deynze, Allen
Published in Horticulture research (12.01.2018)
Published in Horticulture research (12.01.2018)
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Journal Article
Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore-Washington metropolitan area
Thielen, Peter M, Wohl, Shirlee, Mehoke, Thomas, Ramakrishnan, Srividya, Kirsche, Melanie, Falade-Nwulia, Oluwaseun, Trovão, Nídia S, Ernlund, Amanda, Howser, Craig, Sadowski, Norah, Morris, C Paul, Hopkins, Mark, Schwartz, Matthew, Fan, Yunfan, Gniazdowski, Victoria, Lessler, Justin, Sauer, Lauren, Schatz, Michael C, Evans, Jared D, Ray, Stuart C, Timp, Winston, Mostafa, Heba H
Published in JCI insight (22.03.2021)
Published in JCI insight (22.03.2021)
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Journal Article
Repeated Coronavirus Disease 2019 Molecular Testing: Correlation of Severe Acute Respiratory Syndrome Coronavirus 2 Culture With Molecular Assays and Cycle Thresholds
Gniazdowski, Victoria, Paul Morris, C, Wohl, Shirlee, Mehoke, Thomas, Ramakrishnan, Srividya, Thielen, Peter, Powell, Harrison, Smith, Brendan, Armstrong, Derek T, Herrera, Monica, Reifsnyder, Carolyn, Sevdali, Maria, Carroll, Karen C, Pekosz, Andrew, Mostafa, Heba H
Published in Clinical infectious diseases (16.08.2021)
Published in Clinical infectious diseases (16.08.2021)
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Journal Article
Process intensification of atorvastatin calcium crystallization for target polymorph development via continuous combined cooling and antisolvent crystallization using an oscillatory baffled crystallizer
Kshirsagar, Shivani, Lakshmi Ramana Susarla, Naga, Ramakrishnan, Srividya, Nagy, Zoltan K.
Published in International journal of pharmaceutics (05.11.2022)
Published in International journal of pharmaceutics (05.11.2022)
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Journal Article
Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome
He, Jia, Alonge, Michael, Ramakrishnan, Srividya, Benoit, Matthias, Soyk, Sebastian, Reem, Nathan T, Hendelman, Anat, Van Eck, Joyce, Schatz, Michael C, Lippman, Zachary B
Published in The Plant cell (02.01.2023)
Published in The Plant cell (02.01.2023)
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Journal Article
Physicochemical and thermodynamic evaluation of ibrutinib cocrystal formation with a long-chain fatty acid
Tiwari, Shubhanshu Ranjan, Gopi, Shanmukha Prasad, Kallem, Divya Jyothi, Chaturvedi, Deepika, Voguri, Raja Sekhar, Ramakrishnan, Srividya, Dey, Archan, Pal, Sharmistha
Published in CrystEngComm (23.01.2023)
Published in CrystEngComm (23.01.2023)
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Journal Article
Convergent evolution of plant prickles by repeated gene co-option over deep time
Satterlee, James W, Alonso, David, Gramazio, Pietro, Jenike, Katharine M, He, Jia, Arrones, Andrea, Villanueva, Gloria, Plazas, Mariola, Ramakrishnan, Srividya, Benoit, Matthias, Gentile, Iacopo, Hendelman, Anat, Shohat, Hagai, Fitzgerald, Blaine, Robitaille, Gina M, Green, Yumi, Swartwood, Kerry, Passalacqua, Michael J, Gagnon, Edeline, Hilgenhof, Rebecca, Huggins, Trevis D, Eizenga, Georgia C, Gur, Amit, Rutten, Twan, Stein, Nils, Yao, Shengrui, Poncet, Adrien, Bellot, Clement, Frary, Amy, Knapp, Sandra, Bendahmane, Mohammed, Särkinen, Tiina, Gillis, Jesse, Van Eck, Joyce, Schatz, Michael C, Eshed, Yuval, Prohens, Jaime, Vilanova, Santiago, Lippman, Zachary B
Published in Science (American Association for the Advancement of Science) (02.08.2024)
Published in Science (American Association for the Advancement of Science) (02.08.2024)
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Journal Article
Iso-Structurality Induced Solid Phase Transformations: A Case Study with Lenalidomide
Chennuru, Ramanaiah, Muthudoss, Prakash, Voguri, Raja Sekhar, Ramakrishnan, Srividya, Vishweshwar, Peddy, Babu, R. Ravi Chandra, Mahapatra, Sudarshan
Published in Crystal growth & design (01.02.2017)
Published in Crystal growth & design (01.02.2017)
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Journal Article
Isostructurality-induced solid-phase transformations: a case study with lenalidomide
Chennuru, Ramanaiah, Muthudoss, Prakash, Voguri, Raja Sekhar, Ramakrishnan, Srividya, Peddy, Vishweshwar, Ravichandra, Babu R., Mahapatra, Sudarshan
Published in Acta crystallographica. Section A, Foundations and advances (01.12.2017)
Published in Acta crystallographica. Section A, Foundations and advances (01.12.2017)
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Second Harmonic Generation Guided Raman Spectroscopy for Sensitive Detection of Polymorph Transitions
Chowdhury, Azhad U, Ye, Dong Hye, Song, Zhengtian, Zhang, Shijie, Hedderich, Hartmut G, Mallick, Babita, Thirunahari, Satyanarayana, Ramakrishnan, Srividya, Sengupta, Atanu, Gualtieri, Ellen J, Bouman, Charles A, Simpson, Garth J
Published in Analytical chemistry (Washington) (06.06.2017)
Published in Analytical chemistry (Washington) (06.06.2017)
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Development of Pharmaceutically Acceptable Crystalline Forms of Drug Substances via Solid-State Solvent Exchange
Ramakrishnan, Srividya, Yarraguntla, Sesha Reddy, Peddireddy, Subba Reddy, Kanniah, Sundara Lakshmi, Mudapaka, Vamsi Krishna, Shekhawat, Lalita Kanwar, Mahapatra, Sudarshan, Mohammad, Amjad Basha, Vishweshwar, Peddy, Stephens, Peter W
Published in Organic process research & development (20.10.2017)
Published in Organic process research & development (20.10.2017)
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Journal Article
Correction to Triboluminescence from Pharmaceutical Formulations
Smith, Casey J, Griffin, Scott R, Eakins, Gregory S, Deng, Fengyuan, White, Julia K, Thirunahari, Satyanarayana, Ramakrishnan, Srividya, Sangupta, Atanu, Zhang, Siwei, Novak, Julie, Liu, Zhen, Rhodes, Timothy, Simpson, Garth J
Published in Analytical chemistry (Washington) (06.11.2018)
Published in Analytical chemistry (Washington) (06.11.2018)
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Journal Article
Triboluminescence from Pharmaceutical Formulations
Smith, Casey J, Griffin, Scott R, Eakins, Gregory S, Deng, Fengyuan, White, Julia K, Thirunahari, Satyanarayana, Ramakrishnan, Srividya, Sangupta, Atanu, Zhang, Siwei, Novak, Julie, Liu, Zhen, Rhodes, Timothy, Simpson, Garth J
Published in Analytical chemistry (Washington) (05.06.2018)
Published in Analytical chemistry (Washington) (05.06.2018)
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Journal Article
Multicentre genetic diversity study of carbapenem-resistant Enterobacterales: predominance of untypeable pUVA-like bla KPC bearing plasmids
Simner, Patricia J, Bergman, Yehudit, Fan, Yunfan, Jacobs, Emily B, Ramakrishnan, Srividya, Lu, Jennifer, Lewis, Shawna, Hanlon, Ann, Tamma, Pranita D, Schatz, Michael C, Timp, Winston, Carroll, Karen C
Published in JAC-antimicrobial resistance (01.06.2023)
Published in JAC-antimicrobial resistance (01.06.2023)
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Journal Article
Special Feature Section: Engineering Contributions to Process Chemistry
Lamberto, David J, Maloney, Mark T, Murugesan, Saravanababu, Ramakrishnan, Srividya
Published in Organic process research & development (18.09.2015)
Published in Organic process research & development (18.09.2015)
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Journal Article
Preliminary studies on unusual polymorphs of thymine: Structural comparison with other nucleobases
Chennuru, Ramanaiah, Muthudoss, Prakash, Ramakrishnan, Srividya, Mohammad, Amjad Basha, Ravi Chandra Babu, R., Mahapatra, Sudarshan, Nayak, Susanta K.
Published in Journal of molecular structure (15.09.2016)
Published in Journal of molecular structure (15.09.2016)
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