Epigenetic natural variation in Arabidopsis thaliana
Vaughn, Matthew W, Tanurdzić, Milos, Lippman, Zachary, Jiang, Hongmei, Carrasquillo, Robert, Rabinowicz, Pablo D, Dedhia, Neilay, McCombie, W Richard, Agier, Nicolas, Bulski, Agnès, Colot, Vincent, Doerge, R W, Martienssen, Robert A
Published in PLoS biology (01.07.2007)
Published in PLoS biology (01.07.2007)
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An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum
Veluchamy, Alaguraj, Rastogi, Achal, Lin, Xin, Lombard, Bérangère, Murik, Omer, Thomas, Yann, Dingli, Florent, Rivarola, Maximo, Ott, Sandra, Liu, Xinyue, Sun, Yezhou, Rabinowicz, Pablo D, McCarthy, James, Allen, Andrew E, Loew, Damarys, Bowler, Chris, Tirichine, Leïla
Published in Genome Biology (20.05.2015)
Published in Genome Biology (20.05.2015)
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Journal Article
Castor bean organelle genome sequencing and worldwide genetic diversity analysis
Rivarola, Maximo, Foster, Jeffrey T, Chan, Agnes P, Williams, Amber L, Rice, Danny W, Liu, Xinyue, Melake-Berhan, Admasu, Huot Creasy, Heather, Puiu, Daniela, Rosovitz, M J, Khouri, Hoda M, Beckstrom-Sternberg, Stephen M, Allan, Gerard J, Keim, Paul, Ravel, Jacques, Rabinowicz, Pablo D
Published in PloS one (07.07.2011)
Published in PloS one (07.07.2011)
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Journal Article
Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state
Lee, Tae-Jin, Pascuzzi, Pete E, Settlage, Sharon B, Shultz, Randall W, Tanurdzic, Milos, Rabinowicz, Pablo D, Menges, Margit, Zheng, Ping, Main, Dorrie, Murray, James A H, Sosinski, Bryon, Allen, George C, Martienssen, Robert A, Hanley-Bowdoin, Linda, Vaughn, Matthew W, Thompson, William F
Published in PLoS genetics (01.05.2010)
Published in PLoS genetics (01.05.2010)
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Journal Article
Maize Genome Sequencing by Methylation Filtration
Palmer, Lance E., Rabinowicz, Pablo D., O'Shaughnessy, Andrew L., Balija, Vivekanand S., Nascimento, Lidia U., Dike, Sujit, de la Bastide, Melissa, Martienssen, Robert A., McCombie, W. Richard
Published in Science (American Association for the Advancement of Science) (19.12.2003)
Published in Science (American Association for the Advancement of Science) (19.12.2003)
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Journal Article
Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat
Sehgal, Sunish K, Li, Wanlong, Rabinowicz, Pablo D, Chan, Agnes, Simková, Hana, Doležel, Jaroslav, Gill, Bikram S
Published in BMC plant biology (04.05.2012)
Published in BMC plant biology (04.05.2012)
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Journal Article
Differential methylation of genes and repeats in land plants
Rabinowicz, Pablo D, Citek, Robert, Budiman, Muhammad A, Nunberg, Andrew, Bedell, Joseph A, Lakey, Nathan, O'Shaughnessy, Andrew L, Nascimento, Lidia U, McCombie, W Richard, Martienssen, Robert A
Published in Genome research (01.10.2005)
Published in Genome research (01.10.2005)
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Journal Article
Uneven chromosome contraction and expansion in the maize genome
Bruggmann, Rémy, Bharti, Arvind K, Gundlach, Heidrun, Lai, Jinsheng, Young, Sarah, Pontaroli, Ana C, Wei, Fusheng, Haberer, Georg, Fuks, Galina, Du, Chunguang, Raymond, Christina, Estep, Matt C, Liu, Renyi, Bennetzen, Jeffrey L, Chan, Agnes P, Rabinowicz, Pablo D, Quackenbush, John, Barbazuk, W Brad, Wing, Rod A, Birren, Bruce, Nusbaum, Chad, Rounsley, Steve, Mayer, Klaus F X, Messing, Joachim
Published in Genome Research (01.10.2006)
Published in Genome Research (01.10.2006)
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Journal Article
Sorghum genome sequencing by methylation filtration
Bedell, Joseph A, Budiman, Muhammad A, Nunberg, Andrew, Citek, Robert W, Robbins, Dan, Jones, Joshua, Flick, Elizabeth, Rholfing, Theresa, Fries, Jason, Bradford, Kourtney, McMenamy, Jennifer, Smith, Michael, Holeman, Heather, Roe, Bruce A, Wiley, Graham, Korf, Ian F, Rabinowicz, Pablo D, Lakey, Nathan, McCombie, W Richard, Jeddeloh, Jeffrey A, Martienssen, Robert A
Published in PLoS biology (01.01.2005)
Published in PLoS biology (01.01.2005)
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Journal Article
Maize-Targeted Mutagenesis: A Knockout Resource for Maize
May, Bruce P., Liu, Hong, Vollbrecht, Erik, Senior, Lynn, Rabinowicz, Pablo D., Roh, Donna, Pan, Xiaokang, Stein, Lincoln, Freeling, Mike, Alexander, Danny, Martienssen, Rob
Published in Proceedings of the National Academy of Sciences - PNAS (30.09.2003)
Published in Proceedings of the National Academy of Sciences - PNAS (30.09.2003)
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Journal Article
Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome
Martienssen, Robert A, Rabinowicz, Pablo D, Schutz, Kristin, Dedhia, Neilay, Yordan, Cristina, Parnell, Laurence D, Stein, Lincoln, McCombie, W. Richard
Published in Nature genetics (01.11.1999)
Published in Nature genetics (01.11.1999)
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Journal Article
Draft genome sequence of the oilseed species Ricinus communis
Rabinowicz, Pablo D, Chan, Agnes P, Crabtree, Jonathan, Zhao, Qi, Lorenzi, Hernan, Orvis, Joshua, Puiu, Daniela, Melake-Berhan, Admasu, Jones, Kristine M, Redman, Julia, Chen, Grace, Cahoon, Edgar B, Gedil, Melaku, Stanke, Mario, Haas, Brian J, Wortman, Jennifer R, Fraser-Liggett, Claire M, Ravel, Jacques
Published in Nature biotechnology (01.09.2010)
Published in Nature biotechnology (01.09.2010)
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Journal Article
Maize R2R3 Myb Genes: Sequence Analysis Reveals Amplification in the Higher Plants
Rabinowicz, Pablo D, Braun, Edward L, Wolfe, Andrea D, Bowen, Ben, Grotewold, Erich
Published in Genetics (Austin) (01.09.1999)
Published in Genetics (Austin) (01.09.1999)
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Journal Article
Cassava genome from a wild ancestor to cultivated varieties
Wang, Wenquan, Feng, Binxiao, Xiao, Jingfa, Xia, Zhiqiang, Zhou, Xincheng, Li, Pinghua, Zhang, Weixiong, Wang, Ying, Møller, Birger Lindberg, Zhang, Peng, Luo, Ming-Cheng, Xiao, Gong, Liu, Jingxing, Yang, Jun, Chen, Songbi, Rabinowicz, Pablo D., Chen, Xin, Zhang, Hong-Bin, Ceballos, Henan, Lou, Qunfeng, Zou, Meiling, Carvalho, Luiz J.C.B., Zeng, Changying, Xia, Jing, Sun, Shixiang, Fu, Yuhua, Wang, Haiyan, Lu, Cheng, Ruan, Mengbin, Zhou, Shuigeng, Wu, Zhicheng, Liu, Hui, Kannangara, Rubini Maya, Jørgensen, Kirsten, Neale, Rebecca Louise, Bonde, Maya, Heinz, Nanna, Zhu, Wenli, Wang, Shujuan, Zhang, Yang, Pan, Kun, Wen, Mingfu, Ma, Ping-An, Li, Zhengxu, Hu, Meizhen, Liao, Wenbin, Hu, Wenbin, Zhang, Shengkui, Pei, Jinli, Guo, Anping, Guo, Jianchun, Zhang, Jiaming, Zhang, Zhengwen, Ye, Jianqiu, Ou, Wenjun, Ma, Yaqin, Liu, Xinyue, Tallon, Luke J., Galens, Kevin, Ott, Sandra, Huang, Jie, Xue, Jingjing, An, Feifei, Yao, Qingqun, Lu, Xiaojing, Fregene, Martin, López-Lavalle, L. Augusto Becerra, Wu, Jiajie, You, Frank M., Chen, Meili, Hu, Songnian, Wu, Guojiang, Zhong, Silin, Ling, Peng, Chen, Yeyuan, Wang, Qinghuang, Liu, Guodao, Liu, Bin, Li, Kaimian, Peng, Ming
Published in Nature communications (10.10.2014)
Published in Nature communications (10.10.2014)
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Journal Article
Cassava Genome: Current Progress, Future Directions
Prochnik, Simon, Marri, Pradeep Reddy, Desany, Brian, Rabinowicz, Pablo D, Kodira, Chinnappa, Mohiuddin, Mohammed, Rodriguez, Fausto, Fauquet, Claude, Tohme, Joseph, Harkins, Timothy, Rokhsar, Daniel S, Rounsley, Steve
Published in Tropical plant biology (01.03.2012)
Published in Tropical plant biology (01.03.2012)
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Journal Article
Toward Sequencing Cotton (Gossypium) Genomes
Chen, Z. Jeffrey, Scheffler, Brian E, Dennis, Elizabeth, Triplett, Barbara A, Zhang, Tianzhen, Guo, Wangzhen, Chen, Xiaoya, Stelly, David M, Rabinowicz, Pablo D, Town, Christopher D, Arioli, Tony, Brubaker, Curt, Cantrell, Roy G, Lacape, Jean-Marc, Ulloa, Mauricio, Chee, Peng, Gingle, Alan R, Haigler, Candace H, Percy, Richard, Saha, Sukumar, Wilkins, Thea, Wright, Robert J, Van Deynze, Allen, Zhu, Yuxian, Yu, Shuxun, Abdurakhmonov, Ibrokhim, Katageri, Ishwarappa, Kumar, P. Ananda, Mehboob-ur-Rahman, Zafar, Yusuf, Yu, John Z, Kohel, Russell J, Wendel, Jonathan F, Paterson, Andrew H
Published in Plant physiology (Bethesda) (01.12.2007)
Published in Plant physiology (Bethesda) (01.12.2007)
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Journal Article
The highest-copy repeats are methylated in the small genome of the early divergent vascular plant Selaginella moellendorffii
Chan, Agnes P, Melake-Berhan, Admasu, O'Brien, Kimberly, Buckley, Stephanie, Quan, Hui, Chen, Dan, Lewis, Matthew, Banks, Jo Ann, Rabinowicz, Pablo D
Published in BMC genomics (12.06.2008)
Published in BMC genomics (12.06.2008)
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Journal Article
Two New Complete Genome Sequences Offer Insight into Host and Tissue Specificity of Plant Pathogenic Xanthomonas spp
BOGDANOVE, Adam J, KOEBNIK, Ralf, APARNA, Gudlur, RAJARAM, Misha, DELCHER, Arthur L, PHILLIPPY, Adam M, PUIU, Daniela, SCHATZ, Michael C, SHUMWAY, Martin, SOMMER, Daniel D, TRAPNELL, Cole, BENAHMED, Faiza, HONG LU, DIMITROV, George, MADUPU, Ramana, RADUNE, Diana, SULLIVAN, Steven, JHA, Gopaljee, ISHIHARA, Hiromichi, LEE, Sang-Won, PANDEY, Alok, SHARMA, Vikas, SRIARIYANUN, Malinee, FURUTANI, Ayako, SZUREK, Boris, VERA-CRUZ, Casiana M, DORMAN, Karin S, RONALD, Pamela C, VERDIER, Valérie, DOW, J. Maxwell, SONTI, Ramesh V, TSUGE, Seiji, BRENDEL, Volker P, RABINOWICZ, Pablo D, ANGIUOLI, Samuel V, LEACH, Jan E, WHITE, Frank F, SALZBERG, Steven L, PATIL, Prabhu B, VAN SLUYS, Marie-Anne, RYAN, Robert P, MEYER, Damien F, HAN, Sang-Wook
Published in Journal of Bacteriology (01.10.2011)
Published in Journal of Bacteriology (01.10.2011)
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Journal Article
Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum
Veluchamy, Alaguraj, Lin, Xin, Maumus, Florian, Rivarola, Maximo, Bhavsar, Jaysheel, Creasy, Todd, O’Brien, Kimberly, Sengamalay, Naomi A., Tallon, Luke J., Smith, Andrew D., Rayko, Edda, Ahmed, Ikhlak, Crom, Stéphane Le, Farrant, Gregory K., Sgro, Jean-Yves, Olson, Sue A., Bondurant, Sandra Splinter, Allen, Andrew E., Rabinowicz, Pablo D., Sussman, Michael R., Bowler, Chris, Tirichine, Leïla
Published in Nature communications (01.07.2013)
Published in Nature communications (01.07.2013)
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