Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing
Selvaraj, Siddarth, R Dixon, Jesse, Bansal, Vikas, Ren, Bing
Published in Nature biotechnology (01.12.2013)
Published in Nature biotechnology (01.12.2013)
Get full text
Journal Article
A high-resolution map of the three-dimensional chromatin interactome in human cells
Jin, Fulai, Li, Yan, Dixon, Jesse R., Selvaraj, Siddarth, Ye, Zhen, Lee, Ah Young, Yen, Chia-An, Schmitt, Anthony D., Espinoza, Celso A., Ren, Bing
Published in Nature (London) (14.11.2013)
Published in Nature (London) (14.11.2013)
Get full text
Journal Article
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Dixon, Jesse R., Selvaraj, Siddarth, Yue, Feng, Kim, Audrey, Li, Yan, Shen, Yin, Hu, Ming, Liu, Jun S., Ren, Bing
Published in Nature (London) (17.05.2012)
Published in Nature (London) (17.05.2012)
Get full text
Journal Article
Chromatin architecture reorganization during stem cell differentiation
Dixon, Jesse R., Jung, Inkyung, Selvaraj, Siddarth, Shen, Yin, Antosiewicz-Bourget, Jessica E., Lee, Ah Young, Ye, Zhen, Kim, Audrey, Rajagopal, Nisha, Xie, Wei, Diao, Yarui, Liang, Jing, Zhao, Huimin, Lobanenkov, Victor V., Ecker, Joseph R., Thomson, James A., Ren, Bing
Published in Nature (London) (19.02.2015)
Published in Nature (London) (19.02.2015)
Get full text
Journal Article
Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation
Kubo, Naoki, Ishii, Haruhiko, Xiong, Xiong, Bianco, Simona, Meitinger, Franz, Hu, Rong, Hocker, James D., Conte, Mattia, Gorkin, David, Yu, Miao, Li, Bin, Dixon, Jesse R., Hu, Ming, Nicodemi, Mario, Zhao, Huimin, Ren, Bing
Published in Nature structural & molecular biology (01.02.2021)
Published in Nature structural & molecular biology (01.02.2021)
Get full text
Journal Article
Allelic reprogramming of 3D chromatin architecture during early mammalian development
Du, Zhenhai, Zheng, Hui, Huang, Bo, Ma, Rui, Wu, Jingyi, Zhang, Xianglin, He, Jing, Xiang, Yunlong, Wang, Qiujun, Li, Yuanyuan, Ma, Jing, Zhang, Xu, Zhang, Ke, Wang, Yang, Zhang, Michael Q., Gao, Juntao, Dixon, Jesse R., Wang, Xiaowo, Zeng, Jianyang, Xie, Wei
Published in Nature (London) (13.07.2017)
Published in Nature (London) (13.07.2017)
Get full text
Journal Article
Dynamic regulation of histone modifications and long-range chromosomal interactions during postmitotic transcriptional reactivation
Kang, Hyeseon, Shokhirev, Maxim N., Xu, Zhichao, Chandran, Sahaana, Dixon, Jesse R., Hetzer, Martin W.
Published in Genes & development (01.07.2020)
Published in Genes & development (01.07.2020)
Get full text
Journal Article
A non-canonical BRD9-containing BAF chromatin remodeling complex regulates naive pluripotency in mouse embryonic stem cells
Gatchalian, Jovylyn, Malik, Shivani, Ho, Josephine, Lee, Dong-Sung, Kelso, Timothy W. R., Shokhirev, Maxim N., Dixon, Jesse R., Hargreaves, Diana C.
Published in Nature communications (03.12.2018)
Published in Nature communications (03.12.2018)
Get full text
Journal Article
Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes
Song, Michael, Yang, Xiaoyu, Ren, Xingjie, Maliskova, Lenka, Li, Bingkun, Jones, Ian R., Wang, Chao, Jacob, Fadi, Wu, Kenneth, Traglia, Michela, Tam, Tsz Wai, Jamieson, Kirsty, Lu, Si-Yao, Ming, Guo-Li, Li, Yun, Yao, Jun, Weiss, Lauren A., Dixon, Jesse R., Judge, Luke M., Conklin, Bruce R., Song, Hongjun, Gan, Li, Shen, Yin
Published in Nature genetics (01.08.2019)
Published in Nature genetics (01.08.2019)
Get full text
Journal Article
CRISPR reveals a distal super-enhancer required for Sox2 expression in mouse embryonic stem cells
Li, Yan, Rivera, Chloe M, Ishii, Haruhiko, Jin, Fulai, Selvaraj, Siddarth, Lee, Ah Young, Dixon, Jesse R, Ren, Bing
Published in PloS one (08.12.2014)
Published in PloS one (08.12.2014)
Get full text
Journal Article
Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells
Zuin, Jessica, Dixon, Jesse R., van der Reijden, Michael I. J. A., Ye, Zhen, Kolovos, Petros, Brouwer, Rutger W. W., van de Corput, Mariëtte P. C., van de Werken, Harmen J. G., Knoch, Tobias A., van IJcken, Wilfred F. J., Grosveld, Frank G., Ren, Bing, Wendt, Kerstin S.
Published in Proceedings of the National Academy of Sciences - PNAS (21.01.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (21.01.2014)
Get full text
Journal Article
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity
Liu, Zhi, Lee, Dong-Sung, Liang, Yuqiong, Zheng, Ye, Dixon, Jesse R.
Published in Nature communications (06.11.2023)
Published in Nature communications (06.11.2023)
Get full text
Journal Article
Simultaneous profiling of 3D genome structure and DNA methylation in single human cells
Lee, Dong-Sung, Luo, Chongyuan, Zhou, Jingtian, Chandran, Sahaana, Rivkin, Angeline, Bartlett, Anna, Nery, Joseph R., Fitzpatrick, Conor, O’Connor, Carolyn, Dixon, Jesse R., Ecker, Joseph R.
Published in Nature methods (01.10.2019)
Published in Nature methods (01.10.2019)
Get full text
Journal Article
Robust single-cell Hi-C clustering by convolution- and random-walk–based imputation
Zhou, Jingtian, Ma, Jianzhu, Chen, Yusi, Cheng, Chuankai, Bao, Bokan, Peng, Jian, Sejnowski, Terrence J., Dixon, Jesse R., Ecker, Joseph R.
Published in Proceedings of the National Academy of Sciences - PNAS (09.07.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (09.07.2019)
Get full text
Journal Article
DNA methylation atlas of the mouse brain at single-cell resolution
Liu, Hanqing, Zhou, Jingtian, Tian, Wei, Luo, Chongyuan, Bartlett, Anna, Aldridge, Andrew, Lucero, Jacinta, Osteen, Julia K., Nery, Joseph R., Chen, Huaming, Rivkin, Angeline, Castanon, Rosa G., Clock, Ben, Li, Yang Eric, Hou, Xiaomeng, Poirion, Olivier B., Preissl, Sebastian, Pinto-Duarte, Antonio, O’Connor, Carolyn, Boggeman, Lara, Fitzpatrick, Conor, Nunn, Michael, Mukamel, Eran A., Zhang, Zhuzhu, Callaway, Edward M., Ren, Bing, Dixon, Jesse R., Behrens, M. Margarita, Ecker, Joseph R.
Published in Nature (London) (07.10.2021)
Published in Nature (London) (07.10.2021)
Get full text
Journal Article