Intragenic DNA methylation in transcriptional regulation, normal differentiation and cancer
Kulis, Marta, Queirós, Ana C., Beekman, Renée, Martín-Subero, José I.
Published in Biochimica et biophysica acta (01.11.2013)
Published in Biochimica et biophysica acta (01.11.2013)
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Quantitative comparison of DNA methylation assays for biomarker development and clinical applications
Bock, Christoph, Halbritter, Florian, Carmona, Francisco J, Tierling, Sascha, Datlinger, Paul, Assenov, Yassen, Berdasco, María, Bergmann, Anke K, Booher, Keith, Busato, Florence, Campan, Mihaela, Dahl, Christina, Dahmcke, Christina M, Diep, Dinh, Fernández, Agustín F, Gerhauser, Clarissa, Haake, Andrea, Heilmann, Katharina, Holcomb, Thomas, Hussmann, Dianna, Ito, Mitsuteru, Kläver, Ruth, Kreutz, Martin, Kulis, Marta, Lopez, Virginia, Nair, Shalima S, Paul, Dirk S, Plongthongkum, Nongluk, Qu, Wenjia, Queirós, Ana C, Reinicke, Frank, Sauter, Guido, Schlomm, Thorsten, Statham, Aaron, Stirzaker, Clare, Strogantsev, Ruslan, Urdinguio, Rocío G, Walter, Kimberly, Weichenhan, Dieter, Weisenberger, Daniel J, Beck, Stephan, Clark, Susan J, Esteller, Manel, Ferguson-Smith, Anne C, Fraga, Mario F, Guldberg, Per, Hansen, Lise Lotte, Laird, Peter W, Martín-Subero, José I, Nygren, Anders O H, Peist, Ralf, Plass, Christoph, Shames, David S, Siebert, Reiner, Sun, Xueguang, Tost, Jörg, Walter, Jörn, Zhang, Kun
Published in Nature biotechnology (01.07.2016)
Published in Nature biotechnology (01.07.2016)
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Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia
KULIS, Marta, HEATH, Simon, BARBERAN-SOLER, Sergio, PAPASAIKAS, Panagiotis, JARES, Pedro, BEA, Silvia, RICO, Daniel, ECKER, Simone, RUBIO, Miriam, R, Romina, HO, Vincent, KLOTZLE, Brandy, BIBIKOVA, Marina, HERNANDEZ, Lluis, CONDE, Laura, LOPEZ-GUERRA, Mónica, COLOMER, Dolors, VILLAMOR, Neus, AYMERICH, Marta, ROZMAN, Maria, BAYES, Mónica, GUT, Marta, GELPI, Josep L, QUEIROS, Ana C, OROZCO, Modesto, FAN, Jian-Bing, QUESADA, Victor, PUENTE, Xose S, PISANO, David G, VALENCIA, Alfonso, LOPEZ-GUILLERMO, Armando, GUT, Ivo, LOPEZ-OTIN, Carlos, CAMPO, Elias, NAVARRO, Alba, MARTIN-SUBERO, Jose I, CLOT, Guillem, MARTINEZ-TRILLOS, Alejandra, CASTELLANO, Giancarlo, BRUN-HEATH, Isabelle, PINYOL, Magda
Published in Nature genetics (01.11.2012)
Published in Nature genetics (01.11.2012)
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Decoding the DNA Methylome of Mantle Cell Lymphoma in the Light of the Entire B Cell Lineage
Queirós, Ana C., Beekman, Renée, Vilarrasa-Blasi, Roser, Duran-Ferrer, Martí, Clot, Guillem, Merkel, Angelika, Raineri, Emanuele, Russiñol, Nuria, Castellano, Giancarlo, Beà, Sílvia, Navarro, Alba, Kulis, Marta, Verdaguer-Dot, Núria, Jares, Pedro, Enjuanes, Anna, Calasanz, María José, Bergmann, Anke, Vater, Inga, Salaverría, Itziar, van de Werken, Harmen J.G., Wilson, Wyndham H., Datta, Avik, Flicek, Paul, Royo, Romina, Martens, Joost, Giné, Eva, Lopez-Guillermo, Armando, Stunnenberg, Hendrik G., Klapper, Wolfram, Pott, Christiane, Heath, Simon, Gut, Ivo G., Siebert, Reiner, Campo, Elías, Martín-Subero, José I.
Published in Cancer cell (14.11.2016)
Published in Cancer cell (14.11.2016)
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Cell-Cycle-Dependent Reconfiguration of the DNA Methylome during Terminal Differentiation of Human B Cells into Plasma Cells
Caron, Gersende, Hussein, Mourad, Kulis, Marta, Delaloy, Céline, Chatonnet, Fabrice, Pignarre, Amandine, Avner, Stéphane, Lemarié, Maud, Mahé, Elise A., Verdaguer-Dot, Núria, Queirós, Ana C., Tarte, Karin, Martín-Subero, José I., Salbert, Gilles, Fest, Thierry
Published in Cell reports (Cambridge) (03.11.2015)
Published in Cell reports (Cambridge) (03.11.2015)
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Multiple Myeloma-Derived Extracellular Vesicles Modulate the Bone Marrow Immune Microenvironment
Lopes, Raquel, Caetano, Joana, Barahona, Filipa, Pestana, Carolina, Ferreira, Bruna Velosa, Lourenço, Diana, Queirós, Ana C., Bilreiro, Carlos, Shemesh, Noam, Beck, Hans Christian, Carvalho, Ana Sofia, Matthiesen, Rune, Bogen, Bjarne, Costa-Silva, Bruno, Serre, Karine, Carneiro, Emilie Arnault, João, Cristina
Published in Frontiers in immunology (07.07.2022)
Published in Frontiers in immunology (07.07.2022)
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Published in Leukemia (01.02.2022)
Published in Leukemia (01.02.2022)
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The proliferative history shapes the DNA methylome of B-cell tumors and predicts clinical outcome
Duran-Ferrer, Martí, Clot, Guillem, Nadeu, Ferran, Beekman, Renée, Baumann, Tycho, Nordlund, Jessica, Marincevic-Zuniga, Yanara, Lönnerholm, Gudmar, Rivas-Delgado, Alfredo, Martín, Silvia, Ordoñez, Raquel, Castellano, Giancarlo, Kulis, Marta, Queirós, Ana C, Lee, Seung-Tae, Wiemels, Joseph, Royo, Romina, Puiggrós, Montserrat, Lu, Junyan, Giné, Eva, Beà, Sílvia, Jares, Pedro, Agirre, Xabier, Prosper, Felipe, López-Otín, Carlos, Puente, Xosé S, Oakes, Christopher C, Zenz, Thorsten, Delgado, Julio, López-Guillermo, Armando, Campo, Elías, Martín-Subero, José Ignacio
Published in Nature cancer (01.11.2020)
Published in Nature cancer (01.11.2020)
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Detection of chromothripsis-like patterns with a custom array platform for chronic lymphocytic leukemia
Salaverria, Itziar, Martín-Garcia, David, López, Cristina, Clot, Guillem, García-Aragonés, Manel, Navarro, Alba, Delgado, Julio, Baumann, Tycho, Pinyol, Magda, Martin-Guerrero, Idoia, Carrió, Ana, Costa, Dolors, Queirós, Ana C., Jayne, Sandrine, Aymerich, Marta, Villamor, Neus, Colomer, Dolors, González, Marcos, López-Guillermo, Armando, Campo, Elías, Dyer, Martin J. S., Siebert, Reiner, Armengol, Lluís, Beà, Sílvia
Published in Genes chromosomes & cancer (01.11.2015)
Published in Genes chromosomes & cancer (01.11.2015)
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DNA methylation profiles in chronic lymphocytic leukemia patients treated with chemoimmunotherapy
Tsagiopoulou, Maria, Papakonstantinou, Nikos, Moysiadis, Theodoros, Mansouri, Larry, Ljungström, Viktor, Duran-Ferrer, Martí, Malousi, Andigoni, Queirós, Ana C, Plevova, Karla, Bhoi, Sujata, Kollia, Panagoula, Oscier, David, Anagnostopoulos, Achilles, Trentin, Livio, Ritgen, Matthias, Pospisilova, Sarka, Stavroyianni, Niki, Ghia, Paolo, Martin-Subero, Jose I, Pott, Christiane, Rosenquist, Richard, Stamatopoulos, Kostas
Published in Clinical epigenetics (02.12.2019)
Published in Clinical epigenetics (02.12.2019)
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The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia
Beekman, Renée, Chapaprieta, Vicente, Russiñol, Núria, Vilarrasa-Blasi, Roser, Verdaguer-Dot, Núria, Martens, Joost H A, Duran-Ferrer, Martí, Kulis, Marta, Serra, François, Javierre, Biola M, Wingett, Steven W, Clot, Guillem, Queirós, Ana C, Castellano, Giancarlo, Blanc, Julie, Gut, Marta, Merkel, Angelika, Heath, Simon, Vlasova, Anna, Ullrich, Sebastian, Palumbo, Emilio, Enjuanes, Anna, Martín-García, David, Beà, Sílvia, Pinyol, Magda, Aymerich, Marta, Royo, Romina, Puiggros, Montserrat, Torrents, David, Datta, Avik, Lowy, Ernesto, Kostadima, Myrto, Roller, Maša, Clarke, Laura, Flicek, Paul, Agirre, Xabier, Prosper, Felipe, Baumann, Tycho, Delgado, Julio, López-Guillermo, Armando, Fraser, Peter, Yaspo, Marie-Laure, Guigó, Roderic, Siebert, Reiner, Martí-Renom, Marc A, Puente, Xose S, López-Otín, Carlos, Gut, Ivo, Stunnenberg, Hendrik G, Campo, Elias, Martin-Subero, Jose I
Published in Nature medicine (01.06.2018)
Published in Nature medicine (01.06.2018)
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Whole-genome fingerprint of the DNA methylome during human B cell differentiation
Kulis, Marta, Merkel, Angelika, Heath, Simon, Queirós, Ana C, Schuyler, Ronald P, Castellano, Giancarlo, Beekman, Renée, Raineri, Emanuele, Esteve, Anna, Clot, Guillem, Verdaguer-Dot, Néria, Duran-Ferrer, Martí, Russiñol, Nuria, Vilarrasa-Blasi, Roser, Ecker, Simone, Pancaldi, Vera, Rico, Daniel, Agueda, Lidia, Blanc, Julie, Richardson, David, Clarke, Laura, Datta, Avik, Pascual, Marien, Agirre, Xabier, Prosper, Felipe, Alignani, Diego, Paiva, Bruno, Caron, Gersende, Fest, Thierry, Muench, Marcus O, Fomin, Marina E, Lee, Seung-Tae, Wiemels, Joseph L, Valencia, Alfonso, Gut, Marta, Flicek, Paul, Stunnenberg, Hendrik G, Siebert, Reiner, Küppers, Ralf, Gut, Ivo G, Campo, Elías, Martín-Subero, José I
Published in Nature genetics (01.07.2015)
Published in Nature genetics (01.07.2015)
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Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers
Agirre, Xabier, Castellano, Giancarlo, Pascual, Marien, Heath, Simon, Kulis, Marta, Segura, Victor, Bergmann, Anke, Esteve, Anna, Merkel, Angelika, Raineri, Emanuele, Agueda, Lidia, Blanc, Julie, Richardson, David, Clarke, Laura, Datta, Avik, Russiñol, Nuria, Queirós, Ana C, Beekman, Renée, Rodríguez-Madoz, Juan R, San José-Enériz, Edurne, Fang, Fang, Gutiérrez, Norma C, García-Verdugo, José M, Robson, Michael I, Schirmer, Eric C, Guruceaga, Elisabeth, Martens, Joost H A, Gut, Marta, Calasanz, Maria J, Flicek, Paul, Siebert, Reiner, Campo, Elías, Miguel, Jesús F San, Melnick, Ari, Stunnenberg, Hendrik G, Gut, Ivo G, Prosper, Felipe, Martín-Subero, José I
Published in Genome research (01.04.2015)
Published in Genome research (01.04.2015)
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Genome-wide DNA methylation analysis in an antimigraine-treated preclinical model of cortical spreading depolarization
Vila-Pueyo, Marta, Cuenca-León, Ester, Queirós, Ana C., Kulis, Marta, Sintas, Cèlia, Cormand, Bru, Martín-Subero, José Ignacio, Pozo-Rosich, Patricia, Fernàndez-Castillo, Noèlia, Macaya, Alfons
Published in Cephalalgia (01.02.2023)
Published in Cephalalgia (01.02.2023)
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Non-coding recurrent mutations in chronic lymphocytic leukaemia
Puente, Xose S, Beà, Silvia, Valdés-Mas, Rafael, Villamor, Neus, Gutiérrez-Abril, Jesús, Martín-Subero, José I, Munar, Marta, Rubio-Pérez, Carlota, Jares, Pedro, Aymerich, Marta, Baumann, Tycho, Beekman, Renée, Belver, Laura, Carrio, Anna, Castellano, Giancarlo, Clot, Guillem, Colado, Enrique, Colomer, Dolors, Costa, Dolors, Delgado, Julio, Enjuanes, Anna, Estivill, Xavier, Ferrando, Adolfo A, Gelpí, Josep L, González, Blanca, González, Santiago, González, Marcos, Gut, Marta, Hernández-Rivas, Jesús M, López-Guerra, Mónica, Martín-García, David, Navarro, Alba, Nicolás, Pilar, Orozco, Modesto, Payer, Ángel R, Pinyol, Magda, Pisano, David G, Puente, Diana A, Queirós, Ana C, Quesada, Víctor, Romeo-Casabona, Carlos M, Royo, Cristina, Royo, Romina, Rozman, María, Russiñol, Nuria, Salaverría, Itziar, Stamatopoulos, Kostas, Stunnenberg, Hendrik G, Tamborero, David, Terol, María J, Valencia, Alfonso, López-Bigas, Nuria, Torrents, David, Gut, Ivo, López-Guillermo, Armando, López-Otín, Carlos, Campo, Elías
Published in Nature (London) (22.10.2015)
Published in Nature (London) (22.10.2015)
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Broadened T-cell Repertoire Diversity in ivIg-treated SLE Patients is Also Related to the Individual Status of Regulatory T-cells
Costa, Nuno, Pires, Ana E., Gabriel, Ana M., Goulart, Luiz F., Pereira, Clara, Leal, Bárbara, Queiros, Ana C., Chaara, Wahiba, Moraes-Fontes, Maria F., Vasconcelos, Carlos, Ferreira, Carlos, Martins, Jorge, Bastos, Marina, Santos, Maria J., Pereira, Maria A., Martins, Berta, Lima, Margarida, João, Cristina, Six, Adrien, Demengeot, Jocelyne, Fesel, Constantin
Published in Journal of clinical immunology (01.02.2013)
Published in Journal of clinical immunology (01.02.2013)
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Quantitative comparison of DNA methylation assays for biomarker development and clinical applications
Carmona, F. Javier, Berdasco, María, Esteller, Manel, Kulis, Marta, Queirós, Ana C, Martín Subero, José Ignacio, BLUEPRINT consortium
Published in Nature biotechnology (27.06.2016)
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Published in Nature biotechnology (27.06.2016)
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Aberrant Expression of the SOX11 Oncogene in Mantle Cell Lymphoma Is Associated with Activation and De Novo 3D Looping of a Distant Enhancer Element
Vilarrasa-Blasi, Roser, Queirós, Ana C., Beekman, Renée, Russiñol, Nuria, Castellano, Giancarlo, Blanc, Julie, Serra, François, Beà, Sílvia, Kulis, Marta, Verdaguer-Dot, Núria, Enjuanes, Anna, Bergmann, Anke, Salaverria, Itziar, van de Werken, Harmen J.G., Datta, Avik, Flicek, Paul, Martens, Joost H.A., Stunnenberg, Hendrik G., Gut, Marta, Marti-Renom, Marc A., Gut, Ivo G., Siebert, Reiner, Campo, Elias, Martin-Subero, José I.
Published in Blood (02.12.2016)
Published in Blood (02.12.2016)
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DNA hypomethylation affects cancer-related biological functions and genes relevant in neuroblastoma pathogenesis
Mayol, Gemma, Martín-Subero, José I, Ríos, José, Queiros, Ana, Kulis, Marta, Suñol, Mariona, Esteller, Manel, Gómez, Soledad, Garcia, Idoia, de Torres, Carmen, Rodríguez, Eva, Galván, Patricia, Mora, Jaume, Lavarino, Cinzia
Published in PloS one (07.11.2012)
Published in PloS one (07.11.2012)
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