Inference and analysis of cell-cell communication using CellChat
Jin, Suoqin, Guerrero-Juarez, Christian F., Zhang, Lihua, Chang, Ivan, Ramos, Raul, Kuan, Chen-Hsiang, Myung, Peggy, Plikus, Maksim V., Nie, Qing
Published in Nature communications (17.02.2021)
Published in Nature communications (17.02.2021)
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Journal Article
Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds
Guerrero-Juarez, Christian F., Dedhia, Priya H., Jin, Suoqin, Ruiz-Vega, Rolando, Ma, Dennis, Liu, Yuchen, Yamaga, Kosuke, Shestova, Olga, Gay, Denise L., Yang, Zaixin, Kessenbrock, Kai, Nie, Qing, Pear, Warren S., Cotsarelis, George, Plikus, Maksim V.
Published in Nature communications (08.02.2019)
Published in Nature communications (08.02.2019)
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Journal Article
Inference and multiscale model of epithelial-to-mesenchymal transition via single-cell transcriptomic data
Sha, Yutong, Wang, Shuxiong, Zhou, Peijie, Nie, Qing
Published in Nucleic acids research (25.09.2020)
Published in Nucleic acids research (25.09.2020)
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Journal Article
Cell lineage and communication network inference via optimization for single-cell transcriptomics
Wang, Shuxiong, Karikomi, Matthew, MacLean, Adam L, Nie, Qing
Published in Nucleic acids research (20.06.2019)
Published in Nucleic acids research (20.06.2019)
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Journal Article
Single cell transcriptomics of human epidermis identifies basal stem cell transition states
Wang, Shuxiong, Drummond, Michael L., Guerrero-Juarez, Christian F., Tarapore, Eric, MacLean, Adam L., Stabell, Adam R., Wu, Stephanie C., Gutierrez, Guadalupe, That, Bao T., Benavente, Claudia A., Nie, Qing, Atwood, Scott X.
Published in Nature communications (25.08.2020)
Published in Nature communications (25.08.2020)
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Journal Article
An Ovol2-Zeb1 Mutual Inhibitory Circuit Governs Bidirectional and Multi-step Transition between Epithelial and Mesenchymal States
Hong, Tian, Watanabe, Kazuhide, Ta, Catherine Ha, Villarreal-Ponce, Alvaro, Nie, Qing, Dai, Xing
Published in PLoS computational biology (01.11.2015)
Published in PLoS computational biology (01.11.2015)
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Journal Article
Induction and application of ferroptosis in cancer therapy
Nie, Qing, Hu, Yue, Yu, Xiao, Li, Xiao, Fang, Xuedong
Published in Cancer cell international (07.01.2022)
Published in Cancer cell international (07.01.2022)
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Journal Article
Identifying multicellular spatiotemporal organization of cells with SpaceFlow
Ren, Honglei, Walker, Benjamin L., Cang, Zixuan, Nie, Qing
Published in Nature communications (14.07.2022)
Published in Nature communications (14.07.2022)
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Journal Article
Murine interfollicular epidermal differentiation is gradualistic with GRHL3 controlling progression from stem to transition cell states
Lin, Ziguang, Jin, Suoqin, Chen, Jefferson, Li, Zhuorui, Lin, Zhongqi, Tang, Li, Nie, Qing, Andersen, Bogi
Published in Nature communications (28.10.2020)
Published in Nature communications (28.10.2020)
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Journal Article
Inferring neuron-neuron communications from single-cell transcriptomics through NeuronChat
Zhao, Wei, Johnston, Kevin G., Ren, Honglei, Xu, Xiangmin, Nie, Qing
Published in Nature communications (28.02.2023)
Published in Nature communications (28.02.2023)
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Journal Article
Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics
Haensel, Daniel, Jin, Suoqin, Sun, Peng, Cinco, Rachel, Dragan, Morgan, Nguyen, Quy, Cang, Zixuan, Gong, Yanwen, Vu, Remy, MacLean, Adam L., Kessenbrock, Kai, Gratton, Enrico, Nie, Qing, Dai, Xing
Published in Cell reports (Cambridge) (17.03.2020)
Published in Cell reports (Cambridge) (17.03.2020)
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