Proteinortho: detection of (co-)orthologs in large-scale analysis
Lechner, Marcus, Findeiss, Sven, Steiner, Lydia, Marz, Manja, Stadler, Peter F, Prohaska, Sonja J
Published in BMC bioinformatics (28.04.2011)
Published in BMC bioinformatics (28.04.2011)
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Orthology detection combining clustering and synteny for very large datasets
Lechner, Marcus, Hernandez-Rosales, Maribel, Doerr, Daniel, Wieseke, Nicolas, Thévenin, Annelyse, Stoye, Jens, Hartmann, Roland K, Prohaska, Sonja J, Stadler, Peter F
Published in PloS one (19.08.2014)
Published in PloS one (19.08.2014)
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Journal Article
Evolution of DNA Methylation Across Ecdysozoa
Engelhardt, Jan, Scheer, Oliver, Stadler, Peter F., Prohaska, Sonja J.
Published in Journal of molecular evolution (01.02.2022)
Published in Journal of molecular evolution (01.02.2022)
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Journal Article
The African coelacanth genome provides insights into tetrapod evolution
Amemiya, Chris T, Alföldi, Jessica, Lee, Alison P, Fan, Shaohua, Philippe, Hervé, Maccallum, Iain, Braasch, Ingo, Manousaki, Tereza, Schneider, Igor, Rohner, Nicolas, Organ, Chris, Chalopin, Domitille, Smith, Jeramiah J, Robinson, Mark, Dorrington, Rosemary A, Gerdol, Marco, Aken, Bronwen, Biscotti, Maria Assunta, Barucca, Marco, Baurain, Denis, Berlin, Aaron M, Blatch, Gregory L, Buonocore, Francesco, Burmester, Thorsten, Campbell, Michael S, Canapa, Adriana, Cannon, John P, Christoffels, Alan, De Moro, Gianluca, Edkins, Adrienne L, Fan, Lin, Fausto, Anna Maria, Feiner, Nathalie, Forconi, Mariko, Gamieldien, Junaid, Gnerre, Sante, Gnirke, Andreas, Goldstone, Jared V, Haerty, Wilfried, Hahn, Mark E, Hesse, Uljana, Hoffmann, Steve, Johnson, Jeremy, Karchner, Sibel I, Kuraku, Shigehiro, Lara, Marcia, Levin, Joshua Z, Litman, Gary W, Mauceli, Evan, Miyake, Tsutomu, Mueller, M Gail, Nelson, David R, Nitsche, Anne, Olmo, Ettore, Ota, Tatsuya, Pallavicini, Alberto, Panji, Sumir, Picone, Barbara, Ponting, Chris P, Prohaska, Sonja J, Przybylski, Dariusz, Saha, Nil Ratan, Ravi, Vydianathan, Ribeiro, Filipe J, Sauka-Spengler, Tatjana, Scapigliati, Giuseppe, Searle, Stephen M J, Sharpe, Ted, Simakov, Oleg, Stadler, Peter F, Stegeman, John J, Sumiyama, Kenta, Tabbaa, Diana, Tafer, Hakim, Turner-Maier, Jason, van Heusden, Peter, White, Simon, Williams, Louise, Yandell, Mark, Brinkmann, Henner, Volff, Jean-Nicolas, Tabin, Clifford J, Shubin, Neil, Schartl, Manfred, Jaffe, David B, Postlethwait, John H, Venkatesh, Byrappa, Di Palma, Federica, Lander, Eric S, Meyer, Axel, Lindblad-Toh, Kerstin
Published in Nature (London) (18.04.2013)
Published in Nature (London) (18.04.2013)
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Genomic organization of eukaryotic tRNAs
Bermudez-Santana, Clara, Attolini, Camille Stephan-Otto, Kirsten, Toralf, Engelhardt, Jan, Prohaska, Sonja J, Steigele, Stephan, Stadler, Peter F
Published in BMC genomics (28.04.2010)
Published in BMC genomics (28.04.2010)
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Kiwi genome provides insights into evolution of a nocturnal lifestyle
Le Duc, Diana, Renaud, Gabriel, Krishnan, Arunkumar, Almén, Markus Sällman, Huynen, Leon, Prohaska, Sonja J, Ongyerth, Matthias, Bitarello, Bárbara D, Schiöth, Helgi B, Hofreiter, Michael, Stadler, Peter F, Prüfer, Kay, Lambert, David, Kelso, Janet, Schöneberg, Torsten
Published in Genome Biology (23.07.2015)
Published in Genome Biology (23.07.2015)
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Algebraic Dynamic Programming over general data structures
zu Siederdissen, Christian Höner, Prohaska, Sonja J, Stadler, Peter F
Published in BMC bioinformatics (16.12.2015)
Published in BMC bioinformatics (16.12.2015)
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Journal Article
Divergent Evolution of Eukaryotic CC- and A-Adding Enzymes
Erber, Lieselotte, Franz, Paul, Betat, Heike, Prohaska, Sonja, Mörl, Mario
Published in International journal of molecular sciences (10.01.2020)
Published in International journal of molecular sciences (10.01.2020)
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A global genome segmentation method for exploration of epigenetic patterns
Steiner, Lydia, Hopp, Lydia, Wirth, Henry, Galle, Jörg, Binder, Hans, Prohaska, Sonja J, Rohlf, Thimo
Published in PloS one (12.10.2012)
Published in PloS one (12.10.2012)
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Unusual Occurrence of Two Bona-Fide CCA-Adding Enzymes in Dictyostelium discoideum
Erber, Lieselotte, Hoffmann, Anne, Fallmann, Jörg, Hagedorn, Monica, Hammann, Christian, Stadler, Peter F, Betat, Heike, Prohaska, Sonja, Mörl, Mario
Published in International journal of molecular sciences (23.07.2020)
Published in International journal of molecular sciences (23.07.2020)
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The ancestor of modern Holozoa acquired the CCA-adding enzyme from Alphaproteobacteria by horizontal gene transfer
Betat, Heike, Mede, Tobias, Tretbar, Sandy, Steiner, Lydia, Stadler, Peter F, Mörl, Mario, Prohaska, Sonja J
Published in Nucleic acids research (18.08.2015)
Published in Nucleic acids research (18.08.2015)
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Journal Article
Chromatin computation: Epigenetic inheritance as a pattern reconstruction problem
Arnold, Christian, Stadler, Peter F., Prohaska, Sonja J.
Published in Journal of theoretical biology (07.11.2013)
Published in Journal of theoretical biology (07.11.2013)
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Innovation in gene regulation: The case of chromatin computation
Prohaska, Sonja J., Stadler, Peter F., Krakauer, David C.
Published in Journal of theoretical biology (07.07.2010)
Published in Journal of theoretical biology (07.07.2010)
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Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome
Amemiya, Chris T, Powers, Thomas P, Prohaska, Sonja J, Grimwood, Jane, Schmutz, Jeremy, Dickson, Mark, Miyake, Tsutomu, Schoenborn, Michael A, Myers, Richard M, Ruddle, Francis H, Stadler, Peter F
Published in Proceedings of the National Academy of Sciences - PNAS (23.02.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (23.02.2010)
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Evolution of Vault RNAs
Stadler, Peter F., Chen, Julian J.-L., Hackermüller, Jörg, Hoffmann, Steve, Horn, Friedemann, Khaitovich, Phillip, Kretzschmar, Antje K., Mosig, Axel, Prohaska, Sonja J., Qi, Xiaodong, Schutt, Katharina, Ullmann, Kerstin
Published in Molecular biology and evolution (01.09.2009)
Published in Molecular biology and evolution (01.09.2009)
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