Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
Bredeson, Jessen V, Lyons, Jessica B, Prochnik, Simon E, Wu, G Albert, Ha, Cindy M, Edsinger-Gonzales, Eric, Grimwood, Jane, Schmutz, Jeremy, Rabbi, Ismail Y, Egesi, Chiedozie, Nauluvula, Poasa, Lebot, Vincent, Ndunguru, Joseph, Mkamilo, Geoffrey, Bart, Rebecca S, Setter, Tim L, Gleadow, Roslyn M, Kulakow, Peter, Ferguson, Morag E, Rounsley, Steve, Rokhsar, Daniel S
Published in Nature biotechnology (01.05.2016)
Published in Nature biotechnology (01.05.2016)
Get full text
Journal Article
Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)
Brawley, Susan H., Blouin, Nicolas A., Ficko-Blean, Elizabeth, Wheeler, Glen L., Lohr, Martin, Goodson, Holly V., Jenkins, Jerry W., Blaby-Haas, Crysten E., Helliwell, Katherine E., Chan, Cheong Xin, Marriage, Tara N., Bhattacharya, Debashish, Klein, Anita S., Badis, Yacine, Brodie, Juliet, Cao, Yuanyu, Collén, Jonas, Dittami, Simon M., Gachon, Claire M. M., Green, Beverley R., Karpowicz, Steven J., Kim, Jay W., Kudahl, Ulrich Johan, Lin, Senjie, Michel, Gurvan, Mittag, Maria, Olson, Bradley J. S. C., Pangilinan, Jasmyn L., Peng, Yi, Qiu, Huan, Shu, Shengqiang, Singer, John T., Smith, Alison G., Sprecher, Brittany N., Wagner, Volker, Wang, Wenfei, Wang, Zhi-Yong, Yan, Juying, Yarish, Charles, Zäuner-Riek, Simone, Zhuang, Yunyun, Zou, Yong, Lindquist, Erika A., Grimwood, Jane, Barry, Kerrie W., Rokhsar, Daniel S., Schmutz, Jeremy, Stiller, John W., Grossman, Arthur R., Prochnik, Simon E.
Published in Proceedings of the National Academy of Sciences - PNAS (01.08.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (01.08.2017)
Get full text
Journal Article
The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility
Fritz-Laylin, Lillian K., Prochnik, Simon E., Ginger, Michael L., Dacks, Joel B., Carpenter, Meredith L., Field, Mark C., Kuo, Alan, Paredez, Alex, Chapman, Jarrod, Pham, Jonathan, Shu, Shengqiang, Neupane, Rochak, Cipriano, Michael, Mancuso, Joel, Tu, Hank, Salamov, Asaf, Lindquist, Erika, Shapiro, Harris, Lucas, Susan, Grigoriev, Igor V., Cande, W. Zacheus, Fulton, Chandler, Rokhsar, Daniel S., Dawson, Scott C.
Published in Cell (05.03.2010)
Published in Cell (05.03.2010)
Get full text
Journal Article
Genomic Analysis of Organismal Complexity in the Multicellular Green Alga Volvox carteri
Prochnik, Simon E, Umen, James, Nedelcu, Aurora M, Hallmann, Armin, Miller, Stephen M, Nishii, Ichiro, Ferris, Patrick, Kuo, Alan, Mitros, Therese, Fritz-Laylin, Lillian K, Hellsten, Uffe, Chapman, Jarrod, Simakov, Oleg, Rensing, Stefan A, Terry, Astrid, Pangilinan, Jasmyn, Kapitonov, Vladimir, Jurka, Jerzy, Salamov, Asaf, Shapiro, Harris, Schmutz, Jeremy, Grimwood, Jane, Lindquist, Erika, Lucas, Susan, Grigoriev, Igor V, Schmitt, Rüdiger, Kirk, David, Rokhsar, Daniel S
Published in Science (American Association for the Advancement of Science) (09.07.2010)
Published in Science (American Association for the Advancement of Science) (09.07.2010)
Get full text
Journal Article
The Reference Genome of the Halophytic Plant Eutrema salsugineum
Yang, Ruolin, Jarvis, David E, Chen, Hao, Beilstein, Mark A, Grimwood, Jane, Jenkins, Jerry, Shu, Shengqiang, Prochnik, Simon, Xin, Mingming, Ma, Chuang, Schmutz, Jeremy, Wing, Rod A, Mitchell-Olds, Thomas, Schumaker, Karen S, Wang, Xiangfeng
Published in Frontiers in plant science (2013)
Published in Frontiers in plant science (2013)
Get full text
Journal Article
Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga Dunaliella salina Strain CCAP19/18
Polle, Juergen E W, Barry, Kerrie, Cushman, John, Schmutz, Jeremy, Tran, Duc, Hathwaik, Leyla T, Yim, Won C, Jenkins, Jerry, McKie-Krisberg, Zaid, Prochnik, Simon, Lindquist, Erika, Dockter, Rhyan B, Adam, Catherine, Molina, Henrik, Bunkenborg, Jakob, Jin, EonSeon, Buchheim, Mark, Magnuson, Jon
Published in Genome announcements (Washington, DC) (26.10.2017)
Published in Genome announcements (Washington, DC) (26.10.2017)
Get full text
Journal Article
Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis
Kim, Jay W, Brawley, Susan H, Prochnik, Simon, Chovatia, Mansi, Grimwood, Jane, Jenkins, Jerry, LaButti, Kurt, Mavromatis, Konstantinos, Nolan, Matt, Zane, Matthew, Schmutz, Jeremy, Stiller, John W, Grossman, Arthur R
Published in PloS one (25.03.2016)
Published in PloS one (25.03.2016)
Get full text
Journal Article
Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism
Chan, Cheong Xin, Blouin, Nicolas A., Zhuang, Yunyun, Zäuner, Simone, Prochnik, Simon E., Lindquist, Erika, Lin, Senjie, Benning, Christoph, Lohr, Martin, Yarish, Charles, Gantt, Elisabeth, Grossman, Arthur R., Lu, Shan, Müller, Kirsten, W. Stiller, John, Brawley, Susan H., Bhattacharya, Debashish
Published in Journal of phycology (01.12.2012)
Published in Journal of phycology (01.12.2012)
Get full text
Journal Article
The dynamic genome of Hydra
Rokhsar, Daniel S, Steele, Robert E, Chapman, Jarrod A, Kirkness, Ewen F, Simakov, Oleg, Hampson, Steven E, Mitros, Therese, Weinmaier, Thomas, Rattei, Thomas, Balasubramanian, Prakash G, Borman, Jon, Busam, Dana, Disbennett, Kathryn, Pfannkoch, Cynthia, Sumin, Nadezhda, Sutton, Granger G, Viswanathan, Lakshmi Devi, Walenz, Brian, Goodstein, David M, Hellsten, Uffe, Kawashima, Takeshi, Prochnik, Simon E, Putnam, Nicholas H, Shu, Shengquiang, Blumberg, Bruce, Dana, Catherine E, Gee, Lydia, Kibler, Dennis F, Law, Lee, Lindgens, Dirk, Martinez, Daniel E, Peng, Jisong, Wigge, Philip A, Bertulat, Bianca, Guder, Corina, Nakamura, Yukio, Ozbek, Suat, Watanabe, Hiroshi, Khalturin, Konstantin, Hemmrich, Georg, Franke, André, Augustin, René, Fraune, Sebastian, Hayakawa, Eisuke, Hayakawa, Shiho, Hirose, Mamiko, Hwang, Jung Shan, Ikeo, Kazuho, Nishimiya-Fujisawa, Chiemi, Ogura, Atshushi, Takahashi, Toshio, Steinmetz, Patrick R. H, Zhang, Xiaoming, Aufschnaiter, Roland, Eder, Marie-Kristin, Gorny, Anne-Kathrin, Salvenmoser, Willi, Heimberg, Alysha M, Wheeler, Benjamin M, Peterson, Kevin J, Böttger, Angelika, Tischler, Patrick, Wolf, Alexander, Gojobori, Takashi, Remington, Karin A, Strausberg, Robert L, Venter, J. Craig, Technau, Ulrich, Hobmayer, Bert, Bosch, Thomas C. G, Holstein, Thomas W, Fujisawa, Toshitaka, Bode, Hans R, David, Charles N
Published in Nature (London) (25.03.2010)
Published in Nature (London) (25.03.2010)
Get full text
Journal Article
Annotation of the Drosophila melanogastereuchromatic genome: a systematic review
Misra, Sima, Crosby, Madeline A, Mungall, Christopher J, Matthews, Beverley B, Campbell, Kathryn S, Hradecky, Pavel, Huang, Yanmei, Kaminker, Joshua S, Millburn, Gillian H, Prochnik, Simon E, Smith, Christopher D, Tupy, Jonathan L, Whitfield, Eleanor J, Bayraktaroglu, Leyla, Berman, Benjamin P, Bettencourt, Brian R, Celniker, Susan E, de Grey, Aubrey DNJ, Drysdale, Rachel A, Harris, Nomi L, Richter, John, Russo, Susan, Schroeder, Andrew J, Shu, ShengQiang, Stapleton, Mark, Yamada, Chihiro, Ashburner, Michael, Gelbart, William M, Rubin, Gerald M, Lewis, Suzanna E
Published in Genome biology (31.12.2002)
Published in Genome biology (31.12.2002)
Get full text
Journal Article
Analysis of Porphyra Membrane Transporters Demonstrates Gene Transfer among Photosynthetic Eukaryotes and Numerous Sodium-Coupled Transport Systems
Chan, Cheong Xin, Zäuner, Simone, Wheeler, Glen, Grossman, Arthur R., Prochnik, Simon E., Blouin, Nicolas A., Zhuang, Yunyun, Benning, Christoph, Berg, Gry Mine, Yarish, Charles, Eriksen, Renée L., Klein, Anita S., Lin, Senjie, Levine, Ira, Brawley, Susan H., Bhattacharya, Debashish
Published in Plant physiology (Bethesda) (01.04.2012)
Published in Plant physiology (Bethesda) (01.04.2012)
Get full text
Journal Article
Large-scale trends in the evolution of gene structures within 11 animal genomes
Yandell, Mark, Mungall, Chris J, Smith, Chris, Prochnik, Simon, Kaminker, Joshua, Hartzell, George, Lewis, Suzanna, Rubin, Gerald M
Published in PLoS computational biology (01.03.2006)
Published in PLoS computational biology (01.03.2006)
Get full text
Journal Article
Evidence for a microRNA expansion in the bilaterian ancestor
Prochnik, Simon E, Rokhsar, Daniel S, Aboobaker, A. Aziz
Published in Development genes and evolution (01.01.2007)
Published in Development genes and evolution (01.01.2007)
Get full text
Journal Article
Identification and distribution of the NBS-LRR gene family in the Cassava genome
Lozano, Roberto, Hamblin, Martha T, Prochnik, Simon, Jannink, Jean-Luc
Published in BMC genomics (07.05.2015)
Published in BMC genomics (07.05.2015)
Get full text
Journal Article
The wis1 signal transduction pathway is required for expression of cAMP-repressed genes in fission yeast
Stettler, S, Warbrick, E, Prochnik, S, Mackie, S, Fantes, P
Published in Journal of cell science (01.07.1996)
Published in Journal of cell science (01.07.1996)
Get full text
Journal Article
The Chlamydomonas genome project: a decade on
Blaby, Ian K., Blaby-Haas, Crysten E., Tourasse, Nicolas, Hom, Erik F.Y., Lopez, David, Aksoy, Munevver, Grossman, Arthur, Umen, James, Dutcher, Susan, Porter, Mary, King, Stephen, Witman, George B., Stanke, Mario, Harris, Elizabeth H., Goodstein, David, Grimwood, Jane, Schmutz, Jeremy, Vallon, Olivier, Merchant, Sabeeha S., Prochnik, Simon
Published in Trends in plant science (01.10.2014)
Published in Trends in plant science (01.10.2014)
Get full text
Journal Article
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
Slotte, Tanja, Hazzouri, Khaled M, Ågren, J Arvid, Koenig, Daniel, Maumus, Florian, Guo, Ya-Long, Steige, Kim, Platts, Adrian E, Escobar, Juan S, Newman, L Killian, Wang, Wei, Mandáková, Terezie, Vello, Emilio, Smith, Lisa M, Henz, Stefan R, Steffen, Joshua, Takuno, Shohei, Brandvain, Yaniv, Coop, Graham, Andolfatto, Peter, Hu, Tina T, Blanchette, Mathieu, Clark, Richard M, Quesneville, Hadi, Nordborg, Magnus, Gaut, Brandon S, Lysak, Martin A, Jenkins, Jerry, Grimwood, Jane, Chapman, Jarrod, Prochnik, Simon, Shu, Shengqiang, Rokhsar, Daniel, Schmutz, Jeremy, Weigel, Detlef, Wright, Stephen I
Published in Nature genetics (01.07.2013)
Published in Nature genetics (01.07.2013)
Get full text
Journal Article
Cassava Genome: Current Progress, Future Directions
Prochnik, Simon, Marri, Pradeep Reddy, Desany, Brian, Rabinowicz, Pablo D, Kodira, Chinnappa, Mohiuddin, Mohammed, Rodriguez, Fausto, Fauquet, Claude, Tohme, Joseph, Harkins, Timothy, Rokhsar, Daniel S, Rounsley, Steve
Published in Tropical plant biology (01.03.2012)
Published in Tropical plant biology (01.03.2012)
Get full text
Journal Article
Evolution of an Expanded Sex-Determining Locus in Volvox
Ferris, Patrick, Olson, Bradley J.S.C, De Hoff, Peter L, Douglass, Stephen, Casero, David, Prochnik, Simon, Geng, Sa, Rai, Rhitu, Grimwood, Jane, Schmutz, Jeremy, Nishii, Ichiro, Hamaji, Takashi, Nozaki, Hisayoshi, Pellegrini, Matteo, Umen, James G
Published in Science (American Association for the Advancement of Science) (16.04.2010)
Published in Science (American Association for the Advancement of Science) (16.04.2010)
Get full text
Journal Article