NGL viewer: web-based molecular graphics for large complexes
Rose, Alexander S, Bradley, Anthony R, Valasatava, Yana, Duarte, Jose M, Prlić, Andreas, Rose, Peter W
Published in Bioinformatics (01.11.2018)
Published in Bioinformatics (01.11.2018)
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Journal Article
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy
Burley, Stephen K, Berman, Helen M, Bhikadiya, Charmi, Bi, Chunxiao, Chen, Li, Di Costanzo, Luigi, Christie, Cole, Dalenberg, Ken, Duarte, Jose M, Dutta, Shuchismita, Feng, Zukang, Ghosh, Sutapa, Goodsell, David S, Green, Rachel K, Guranović, Vladimir, Guzenko, Dmytro, Hudson, Brian P, Kalro, Tara, Liang, Yuhe, Lowe, Robert, Namkoong, Harry, Peisach, Ezra, Periskova, Irina, Prlić, Andreas, Randle, Chris, Rose, Alexander, Rose, Peter, Sala, Raul, Sekharan, Monica, Shao, Chenghua, Tan, Lihua, Tao, Yi-Ping, Valasatava, Yana, Voigt, Maria, Westbrook, John, Woo, Jesse, Yang, Huanwang, Young, Jasmine, Zhuravleva, Marina, Zardecki, Christine
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Journal Article
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education
Rose, Peter W, Prlić, Andreas, Bi, Chunxiao, Bluhm, Wolfgang F, Christie, Cole H, Dutta, Shuchismita, Green, Rachel Kramer, Goodsell, David S, Westbrook, John D, Woo, Jesse, Young, Jasmine, Zardecki, Christine, Berman, Helen M, Bourne, Philip E, Burley, Stephen K
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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Journal Article
Recon3D enables a three-dimensional view of gene variation in human metabolism
Brunk, Elizabeth, Sahoo, Swagatika, Zielinski, Daniel C, Altunkaya, Ali, Dräger, Andreas, Mih, Nathan, Gatto, Francesco, Nilsson, Avlant, Preciat Gonzalez, German Andres, Aurich, Maike Kathrin, Prlić, Andreas, Sastry, Anand, Danielsdottir, Anna D, Heinken, Almut, Noronha, Alberto, Rose, Peter W, Burley, Stephen K, Fleming, Ronan M T, Nielsen, Jens, Thiele, Ines, Palsson, Bernhard O
Published in Nature biotechnology (01.03.2018)
Published in Nature biotechnology (01.03.2018)
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Journal Article
The RCSB protein data bank: integrative view of protein, gene and 3D structural information
Rose, Peter W, Prlić, Andreas, Altunkaya, Ali, Bi, Chunxiao, Bradley, Anthony R, Christie, Cole H, Costanzo, Luigi Di, Duarte, Jose M, Dutta, Shuchismita, Feng, Zukang, Green, Rachel Kramer, Goodsell, David S, Hudson, Brian, Kalro, Tara, Lowe, Robert, Peisach, Ezra, Randle, Christopher, Rose, Alexander S, Shao, Chenghua, Tao, Yi-Ping, Valasatava, Yana, Voigt, Maria, Westbrook, John D, Woo, Jesse, Yang, Huangwang, Young, Jasmine Y, Zardecki, Christine, Berman, Helen M, Burley, Stephen K
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
The RCSB Protein Data Bank: new resources for research and education
Rose, Peter W, Bi, Chunxiao, Bluhm, Wolfgang F, Christie, Cole H, Dimitropoulos, Dimitris, Dutta, Shuchismita, Green, Rachel K, Goodsell, David S, Prlic, Andreas, Quesada, Martha, Quinn, Gregory B, Ramos, Alexander G, Westbrook, John D, Young, Jasmine, Zardecki, Christine, Berman, Helen M, Bourne, Philip E
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
Impact of genetic variation on three dimensional structure and function of proteins
Bhattacharya, Roshni, Rose, Peter W, Burley, Stephen K, Prlić, Andreas
Published in PloS one (15.03.2017)
Published in PloS one (15.03.2017)
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Journal Article
Pre-calculated protein structure alignments at the RCSB PDB website
Prlić, Andreas, Bliven, Spencer, Rose, Peter W., Bluhm, Wolfgang F., Bizon, Chris, Godzik, Adam, Bourne, Philip E.
Published in Bioinformatics (01.12.2010)
Published in Bioinformatics (01.12.2010)
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Journal Article
BioJava: an open-source framework for bioinformatics in 2012
PRLIC, Andreas, YATES, Andrew, HOLLAND, Richard, RIMSA, Gediminas, HEUER, Michael L, BRANDSTÄTTER-MÜLLER, H, BOURNE, Philip E, WILLIS, Scooter, BLIVEN, Spencer E, ROSE, Peter W, JACOBSEN, Julius, TROSHIN, Peter V, CHAPMAN, Mark, JIANJIONG GAO, CHUAN HOCK KOH, FOISY, Sylvain
Published in Bioinformatics (Oxford, England) (15.10.2012)
Published in Bioinformatics (Oxford, England) (15.10.2012)
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Journal Article
Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm
Bliven, Spencer E, Lafita, Aleix, Rose, Peter W, Capitani, Guido, Prlić, Andreas, Bourne, Philip E
Published in PLoS computational biology (22.04.2019)
Published in PLoS computational biology (22.04.2019)
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Journal Article
BioJava 5: A community driven open-source bioinformatics library
Lafita, Aleix, Bliven, Spencer, Prlić, Andreas, Guzenko, Dmytro, Rose, Peter W, Bradley, Anthony, Pavan, Paolo, Myers-Turnbull, Douglas, Valasatava, Yana, Heuer, Michael, Larson, Matt, Burley, Stephen K, Duarte, Jose M
Published in PLoS computational biology (01.02.2019)
Published in PLoS computational biology (01.02.2019)
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Journal Article
Towards an efficient compression of 3D coordinates of macromolecular structures
Valasatava, Yana, Bradley, Anthony R, Rose, Alexander S, Duarte, Jose M, Prlić, Andreas, Rose, Peter W
Published in PloS one (31.03.2017)
Published in PloS one (31.03.2017)
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Journal Article
MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures
Bradley, Anthony R, Rose, Alexander S, Pavelka, Antonín, Valasatava, Yana, Duarte, Jose M, Prlić, Andreas, Rose, Peter W
Published in PLoS computational biology (01.06.2017)
Published in PLoS computational biology (01.06.2017)
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Journal Article
RCSB Protein Data Bank: redesigned web site and web services
Rose, Peter W, Beran, Bojan, Bi, Chunxiao, Bluhm, Wolfgang F, Dimitropoulos, Dimitris, Goodsell, David S, Prlić, Andreas, Quesada, Martha, Quinn, Gregory B, Westbrook, John D, Young, Jasmine, Yukich, Benjamin, Zardecki, Christine, Berman, Helen M, Bourne, Philip E
Published in Nucleic acids research (01.01.2011)
Published in Nucleic acids research (01.01.2011)
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Journal Article
Trendspotting in the Protein Data Bank
Berman, Helen M., Coimbatore Narayanan, Buvaneswari, Costanzo, Luigi Di, Dutta, Shuchismita, Ghosh, Sutapa, Hudson, Brian P., Lawson, Catherine L., Peisach, Ezra, Prlić, Andreas, Rose, Peter W., Shao, Chenghua, Yang, Huanwang, Young, Jasmine, Zardecki, Christine
Published in FEBS letters (17.04.2013)
Published in FEBS letters (17.04.2013)
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Journal Article
Investigation of protein quaternary structure via stoichiometry and symmetry information
Korkmaz, Selcuk, Duarte, Jose M, Prlić, Andreas, Goksuluk, Dincer, Zararsiz, Gokmen, Saracbasi, Osman, Burley, Stephen K, Rose, Peter W
Published in PloS one (04.06.2018)
Published in PloS one (04.06.2018)
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Journal Article
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework
Glusman, Gustavo, Rose, Peter W, Prlić, Andreas, Dougherty, Jennifer, Duarte, José M, Hoffman, Andrew S, Barton, Geoffrey J, Bendixen, Emøke, Bergquist, Timothy, Bock, Christian, Brunk, Elizabeth, Buljan, Marija, Burley, Stephen K, Cai, Binghuang, Carter, Hannah, Gao, JianJiong, Godzik, Adam, Heuer, Michael, Hicks, Michael, Hrabe, Thomas, Karchin, Rachel, Leman, Julia Koehler, Lane, Lydie, Masica, David L, Mooney, Sean D, Moult, John, Omenn, Gilbert S, Pearl, Frances, Pejaver, Vikas, Reynolds, Sheila M, Rokem, Ariel, Schwede, Torsten, Song, Sicheng, Tilgner, Hagen, Valasatava, Yana, Zhang, Yang, Deutsch, Eric W
Published in Genome medicine (18.12.2017)
Published in Genome medicine (18.12.2017)
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