Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding
Xue, Yali, Prado-Martinez, Javier, Sudmant, Peter H., Narasimhan, Vagheesh, Ayub, Qasim, Szpak, Michal, Frandsen, Peter, Chen, Yuan, Yngvadottir, Bryndis, Cooper, David N., de Manuel, Marc, Hernandez-Rodriguez, Jessica, Lobon, Irene, Siegismund, Hans R., Pagani, Luca, Quail, Michael A., Hvilsom, Christina, Mudakikwa, Antoine, Eichler, Evan E., Cranfield, Michael R., Marques-Bonet, Tomas, Tyler-Smith, Chris, Scally, Aylwyn
Published in Science (American Association for the Advancement of Science) (10.04.2015)
Published in Science (American Association for the Advancement of Science) (10.04.2015)
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Journal Article
Dynamics of DNA methylation in recent human and great ape evolution
Hernando-Herraez, Irene, Prado-Martinez, Javier, Garg, Paras, Fernandez-Callejo, Marcos, Heyn, Holger, Hvilsom, Christina, Navarro, Arcadi, Esteller, Manel, Sharp, Andrew J, Marques-Bonet, Tomas
Published in PLoS genetics (01.09.2013)
Published in PLoS genetics (01.09.2013)
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Journal Article
Evolution and diversity of copy number variation in the great ape lineage
Sudmant, Peter H, Huddleston, John, Catacchio, Claudia R, Malig, Maika, Hillier, Ladeana W, Baker, Carl, Mohajeri, Kiana, Kondova, Ivanela, Bontrop, Ronald E, Persengiev, Stephan, Antonacci, Francesca, Ventura, Mario, Prado-Martinez, Javier, Marques-Bonet, Tomas, Eichler, Evan E
Published in Genome research (01.09.2013)
Published in Genome research (01.09.2013)
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Journal Article
The interplay between DNA methylation and sequence divergence in recent human evolution
Hernando-Herraez, Irene, Heyn, Holger, Fernandez-Callejo, Marcos, Vidal, Enrique, Fernandez-Bellon, Hugo, Prado-Martinez, Javier, Sharp, Andrew J, Esteller, Manel, Marques-Bonet, Tomas
Published in Nucleic acids research (30.09.2015)
Published in Nucleic acids research (30.09.2015)
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Journal Article
Ancient gene flow from early modern humans into Eastern Neanderthals
Kuhlwilm, Martin, Gronau, Ilan, Hubisz, Melissa J., de Filippo, Cesare, Prado-Martinez, Javier, Kircher, Martin, Fu, Qiaomei, Burbano, Hernán A., Lalueza-Fox, Carles, de la Rasilla, Marco, Rosas, Antonio, Rudan, Pavao, Brajkovic, Dejana, Kucan, Željko, Gušic, Ivan, Marques-Bonet, Tomas, Andrés, Aida M., Viola, Bence, Pääbo, Svante, Meyer, Matthias, Siepel, Adam, Castellano, Sergi
Published in Nature (London) (25.02.2016)
Published in Nature (London) (25.02.2016)
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Journal Article
Morphometric, Behavioral, and Genomic Evidence for a New Orangutan Species
Nater, Alexander, Mattle-Greminger, Maja P., Nurcahyo, Anton, Nowak, Matthew G., de Manuel, Marc, Desai, Tariq, Groves, Colin, Pybus, Marc, Sonay, Tugce Bilgin, Roos, Christian, Lameira, Adriano R., Wich, Serge A., Askew, James, Davila-Ross, Marina, Fredriksson, Gabriella, de Valles, Guillem, Casals, Ferran, Prado-Martinez, Javier, Goossens, Benoit, Verschoor, Ernst J., Warren, Kristin S., Singleton, Ian, Marques, David A., Pamungkas, Joko, Perwitasari-Farajallah, Dyah, Rianti, Puji, Tuuga, Augustine, Gut, Ivo G., Gut, Marta, Orozco-terWengel, Pablo, van Schaik, Carel P., Bertranpetit, Jaume, Anisimova, Maria, Scally, Aylwyn, Marques-Bonet, Tomas, Meijaard, Erik, Krützen, Michael
Published in Current biology (20.11.2017)
Published in Current biology (20.11.2017)
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Journal Article
Chimpanzee genomic diversity reveals ancient admixture with bonobos
de Manuel, Marc, Kuhlwilm, Martin, Frandsen, Peter, Sousa, Vitor C., Desai, Tariq, Prado-Martinez, Javier, Hernandez-Rodriguez, Jessica, Dupanloup, Isabelle, Lao, Oscar, Hallast, Pille, Schmidt, Joshua M., Heredia-Genestar, José María, Benazzo, Andrea, Barbujani, Guido, Peter, Benjamin M., Kuderna, Lukas F. K., Casals, Ferran, Angedakin, Samuel, Arandjelovic, Mimi, Boesch, Christophe, Kühl, Hjalmar, Vigilant, Linda, Langergraber, Kevin, Novembre, John, Gut, Marta, Gut, Ivo, Navarro, Arcadi, Carlsen, Frauds, Andres, Aida M., Siegismund, Hans. R., Scally, Aylwyn, Excoffier, Laurent, Tyler-Smith, Chris, Castellano, Sergi, Xue, Yali, Hvilsom, Christina, Marques-Bonet, Tomas
Published in Science (American Association for the Advancement of Science) (28.10.2016)
Published in Science (American Association for the Advancement of Science) (28.10.2016)
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Journal Article
Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European
Olalde, Iñigo, Allentoft, Morten E., Sánchez-Quinto, Federico, Santpere, Gabriel, Chiang, Charleston W. K., DeGiorgio, Michael, Prado-Martinez, Javier, Rodríguez, Juan Antonio, Rasmussen, Simon, Quilez, Javier, Ramírez, Oscar, Marigorta, Urko M., Fernández-Callejo, Marcos, Prada, María Encina, Encinas, Julio Manuel Vidal, Nielsen, Rasmus, Netea, Mihai G., Novembre, John, Sturm, Richard A., Sabeti, Pardis, Marquès-Bonet, Tomàs, Navarro, Arcadi, Willerslev, Eske, Lalueza-Fox, Carles
Published in Nature (London) (13.03.2014)
Published in Nature (London) (13.03.2014)
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Journal Article
Rates and patterns of great ape retrotransposition
Hormozdiari, Fereydoun, Konkel, Miriam K., Prado-Martinez, Javier, Chiatante, Giorgia, Herraez, Irene Hernando, Walker, Jerilyn A., Nelson, Benjamin, Alkan, Can, Sudmant, Peter H., Huddleston, John, Catacchio, Claudia R., Ko, Arthur, Malig, Maika, Baker, Carl, Marques-Bonet, Tomas, Ventura, Mario, Batzer, Mark A., Eichler, Evan E.
Published in Proceedings of the National Academy of Sciences - PNAS (13.08.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (13.08.2013)
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Journal Article
The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild
Prado-Martinez, Javier, Hernando-Herraez, Irene, Lorente-Galdos, Belen, Dabad, Marc, Ramirez, Oscar, Baeza-Delgado, Carlos, Morcillo-Suarez, Carlos, Alkan, Can, Hormozdiari, Fereydoun, Raineri, Emanuele, Estellé, Jordi, Fernandez-Callejo, Marcos, Valles, Mònica, Ritscher, Lars, Schöneberg, Torsten, de la Calle-Mustienes, Elisa, Casillas, Sònia, Rubio-Acero, Raquel, Melé, Marta, Engelken, Johannes, Caceres, Mario, Gomez-Skarmeta, Jose Luis, Gut, Marta, Bertranpetit, Jaume, Gut, Ivo G, Abello, Teresa, Eichler, Evan E, Mingarro, Ismael, Lalueza-Fox, Carles, Navarro, Arcadi, Marques-Bonet, Tomas
Published in BMC genomics (31.05.2013)
Published in BMC genomics (31.05.2013)
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Journal Article
Demographic History of the Genus Pan Inferred from Whole Mitochondrial Genome Reconstructions
Lobon, Irene, Tucci, Serena, de Manuel, Marc, Ghirotto, Silvia, Benazzo, Andrea, Prado-Martinez, Javier, Lorente-Galdos, Belen, Nam, Kiwoong, Dabad, Marc, Hernandez-Rodriguez, Jessica, Comas, David, Navarro, Arcadi, Schierup, Mikkel H, Andres, Aida M, Barbujani, Guido, Hvilsom, Christina, Marques-Bonet, Tomas
Published in Genome biology and evolution (01.06.2016)
Published in Genome biology and evolution (01.06.2016)
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Journal Article
Population Structure, Stratification, and Introgression of Human Structural Variation
Almarri, Mohamed A., Bergström, Anders, Prado-Martinez, Javier, Yang, Fengtang, Fu, Beiyuan, Dunham, Alistair S., Chen, Yuan, Hurles, Matthew E., Tyler-Smith, Chris, Xue, Yali
Published in Cell (09.07.2020)
Published in Cell (09.07.2020)
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Journal Article
Continuity and Admixture in the Last Five Millennia of Levantine History from Ancient Canaanite and Present-Day Lebanese Genome Sequences
Haber, Marc, Doumet-Serhal, Claude, Scheib, Christiana, Xue, Yali, Danecek, Petr, Mezzavilla, Massimo, Youhanna, Sonia, Martiniano, Rui, Prado-Martinez, Javier, Szpak, Michał, Matisoo-Smith, Elizabeth, Schutkowski, Holger, Mikulski, Richard, Zalloua, Pierre, Kivisild, Toomas, Tyler-Smith, Chris
Published in American journal of human genetics (03.08.2017)
Published in American journal of human genetics (03.08.2017)
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Journal Article
Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa
Gurdasani, Deepti, Carstensen, Tommy, Fatumo, Segun, Chen, Guanjie, Franklin, Chris S., Prado-Martinez, Javier, Bouman, Heleen, Abascal, Federico, Haber, Marc, Tachmazidou, Ioanna, Mathieson, Iain, Ekoru, Kenneth, DeGorter, Marianne K., Nsubuga, Rebecca N., Finan, Chris, Wheeler, Eleanor, Chen, Li, Cooper, David N., Schiffels, Stephan, Chen, Yuan, Ritchie, Graham R.S., Pollard, Martin O., Fortune, Mary D., Mentzer, Alex J., Garrison, Erik, Bergström, Anders, Hatzikotoulas, Konstantinos, Adeyemo, Adebowale, Doumatey, Ayo, Elding, Heather, Wain, Louise V., Ehret, Georg, Auer, Paul L., Kooperberg, Charles L., Reiner, Alexander P., Franceschini, Nora, Maher, Dermot, Montgomery, Stephen B., Kadie, Carl, Widmer, Chris, Xue, Yali, Seeley, Janet, Asiki, Gershim, Kamali, Anatoli, Young, Elizabeth H., Pomilla, Cristina, Soranzo, Nicole, Zeggini, Eleftheria, Pirie, Fraser, Morris, Andrew P., Heckerman, David, Tyler-Smith, Chris, Motala, Ayesha A., Rotimi, Charles, Kaleebu, Pontiano, Barroso, Inês, Sandhu, Manj S.
Published in Cell (31.10.2019)
Published in Cell (31.10.2019)
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Journal Article
Insights into hominid evolution from the gorilla genome sequence
Scally, Aylwyn, Dutheil, Julien Y., Hillier, LaDeana W., Jordan, Gregory E., Goodhead, Ian, Herrero, Javier, Hobolth, Asger, Lappalainen, Tuuli, Mailund, Thomas, Marques-Bonet, Tomas, McCarthy, Shane, Montgomery, Stephen H., Schwalie, Petra C., Tang, Y. Amy, Ward, Michelle C., Xue, Yali, Yngvadottir, Bryndis, Alkan, Can, Andersen, Lars N., Ayub, Qasim, Ball, Edward V., Beal, Kathryn, Bradley, Brenda J., Chen, Yuan, Clee, Chris M., Fitzgerald, Stephen, Graves, Tina A., Gu, Yong, Heath, Paul, Heger, Andreas, Karakoc, Emre, Kolb-Kokocinski, Anja, Laird, Gavin K., Lunter, Gerton, Meader, Stephen, Mort, Matthew, Mullikin, James C., Munch, Kasper, O’Connor, Timothy D., Phillips, Andrew D., Prado-Martinez, Javier, Rogers, Anthony S., Sajjadian, Saba, Schmidt, Dominic, Shaw, Katy, Simpson, Jared T., Stenson, Peter D., Turner, Daniel J., Vigilant, Linda, Vilella, Albert J., Whitener, Weldon, Zhu, Baoli, Cooper, David N., de Jong, Pieter, Dermitzakis, Emmanouil T., Eichler, Evan E., Flicek, Paul, Goldman, Nick, Mundy, Nicholas I., Ning, Zemin, Odom, Duncan T., Ponting, Chris P., Quail, Michael A., Ryder, Oliver A., Searle, Stephen M., Warren, Wesley C., Wilson, Richard K., Schierup, Mikkel H., Rogers, Jane, Tyler-Smith, Chris, Durbin, Richard
Published in Nature (London) (08.03.2012)
Published in Nature (London) (08.03.2012)
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Journal Article
Chad Genetic Diversity Reveals an African History Marked by Multiple Holocene Eurasian Migrations
Haber, Marc, Mezzavilla, Massimo, Bergström, Anders, Prado-Martinez, Javier, Hallast, Pille, Saif-Ali, Riyadh, Al-Habori, Molham, Dedoussis, George, Zeggini, Eleftheria, Blue-Smith, Jason, Wells, R. Spencer, Xue, Yali, Zalloua, Pierre A., Tyler-Smith, Chris
Published in American journal of human genetics (01.12.2016)
Published in American journal of human genetics (01.12.2016)
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Journal Article
Response to Giem
Haber, Marc, Doumet-Serhal, Claude, Scheib, Christiana, Xue, Yali, Danecek, Petr, Mezzavilla, Massimo, Youhanna, Sonia, Martiniano, Rui, Prado-Martinez, Javier, Szpak, Michał, Matisoo-Smith, Elizabeth, Schutkowski, Holger, Mikulski, Richard, Zalloua, Pierre, Kivisild, Toomas, Tyler-Smith, Chris
Published in American journal of human genetics (01.02.2018)
Published in American journal of human genetics (01.02.2018)
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Journal Article
Morphometric, Behavioral, and Genomic Evidence for a New Orangutan Species
Nater, Alexander, Mattle-Greminger, Maja P., Nurcahyo, Anton, Nowak, Matthew G., de Manuel, Marc, Desai, Tariq, Groves, Colin, Pybus, Marc, Sonay, Tugce Bilgin, Roos, Christian, Lameira, Adriano R., Wich, Serge A., Askew, James, Davila-Ross, Marina, Fredriksson, Gabriella, de Valles, Guillem, Casals, Ferran, Prado-Martinez, Javier, Goossens, Benoit, Verschoor, Ernst J., Warren, Kristin S., Singleton, Ian, Marques, David A., Pamungkas, Joko, Perwitasari-Farajallah, Dyah, Rianti, Puji, Tuuga, Augustine, Gut, Ivo G., Gut, Marta, Orozco-terWengel, Pablo, van Schaik, Carel P., Bertranpetit, Jaume, Anisimova, Maria, Scally, Aylwyn, Marques-Bonet, Tomas, Meijaard, Erik, Krützen, Michael
Published in Current biology (20.11.2017)
Published in Current biology (20.11.2017)
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Journal Article