CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
Couvin, David, Bernheim, Aude, Toffano-Nioche, Claire, Touchon, Marie, Michalik, Juraj, Néron, Bertrand, Rocha, Eduardo P C, Vergnaud, Gilles, Gautheret, Daniel, Pourcel, Christine
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers
Pourcel, Christine, Touchon, Marie, Villeriot, Nicolas, Vernadet, Jean-Philippe, Couvin, David, Toffano-Nioche, Claire, Vergnaud, Gilles
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Journal Article
2-kupl: mapping-free variant detection from DNA-seq data of matched samples
Wang, Yunfeng, Xue, Haoliang, Pourcel, Christine, Du, Yang, Gautheret, Daniel
Published in BMC bioinformatics (05.06.2021)
Published in BMC bioinformatics (05.06.2021)
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Journal Article
Genotypic Expansion Within the Population Structure of Classical Brucella Species Revealed by MLVA16 Typing of 1404 Brucella Isolates From Different Animal and Geographic Origins, 1974-2006
Vergnaud, Gilles, Hauck, Yolande, Christiany, David, Daoud, Brendan, Pourcel, Christine, Jacques, Isabelle, Cloeckaert, Axel, Zygmunt, Michel S
Published in Frontiers in microbiology (12.07.2018)
Published in Frontiers in microbiology (12.07.2018)
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Journal Article
Comparison of French and Worldwide Bacillus anthracis Strains Favors a Recent, Post-Columbian Origin of the Predominant North-American Clade
Vergnaud, Gilles, Girault, Guillaume, Thierry, Simon, Pourcel, Christine, Madani, Nora, Blouin, Yann
Published in PloS one (22.02.2016)
Published in PloS one (22.02.2016)
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Journal Article
On-line resources for bacterial micro-evolution studies using MLVA or CRISPR typing
Grissa, Ibtissem, Bouchon, Patrick, Pourcel, Christine, Vergnaud, Gilles
Published in Biochimie (01.04.2008)
Published in Biochimie (01.04.2008)
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Journal Article
Significance of the identification in the Horn of Africa of an exceptionally deep branching Mycobacterium tuberculosis clade
Blouin, Yann, Hauck, Yolande, Soler, Charles, Fabre, Michel, Vong, Rithy, Dehan, Céline, Cazajous, Géraldine, Massoure, Pierre-Laurent, Kraemer, Philippe, Jenkins, Akinbowale, Garnotel, Eric, Pourcel, Christine, Vergnaud, Gilles
Published in PloS one (27.12.2012)
Published in PloS one (27.12.2012)
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Journal Article
The susceptibility of Pseudomonas aeruginosa strains from cystic fibrosis patients to bacteriophages
Essoh, Christiane, Blouin, Yann, Loukou, Guillaume, Cablanmian, Arsher, Lathro, Serge, Kutter, Elizabeth, Thien, Hoang Vu, Vergnaud, Gilles, Pourcel, Christine
Published in PloS one (24.04.2013)
Published in PloS one (24.04.2013)
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Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d'Ivoire
Essoh, Christiane, Latino, Libera, Midoux, Cédric, Blouin, Yann, Loukou, Guillaume, Nguetta, Simon-Pierre A, Lathro, Serge, Cablanmian, Arsher, Kouassi, Athanase K, Vergnaud, Gilles, Pourcel, Christine
Published in PloS one (26.06.2015)
Published in PloS one (26.06.2015)
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Journal Article
Identification of Variable-Number Tandem-Repeat (VNTR) Sequences in Acinetobacter baumannii and Interlaboratory Validation of an Optimized Multiple-Locus VNTR Analysis Typing Scheme
Pourcel, Christine, Minandri, Fabrizia, Hauck, Yolande, D'Arezzo, Silvia, Imperi, Francesco, Vergnaud, Gilles, Visca, Paolo
Published in Journal of Clinical Microbiology (01.02.2011)
Published in Journal of Clinical Microbiology (01.02.2011)
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Journal Article
Progenitor “Mycobacterium canettii” clone responsible for lymph node tuberculosis epidemic, Djibouti
Blouin, Yann, Cazajous, Géraldine, Dehan, Céline, Soler, Charles, Vong, Rithy, Hassan, Mohamed Osman, Hauck, Yolande, Boulais, Christian, Andriamanantena, Dina, Martinaud, Christophe, Martin, Émilie, Pourcel, Christine, Vergnaud, Gilles
Published in Emerging infectious diseases (01.01.2014)
Published in Emerging infectious diseases (01.01.2014)
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Journal Article
A novel Pseudomonas aeruginosa bacteriophage, Ab31, a chimera formed from temperate phage PAJU2 and P. putida lytic phage AF: characteristics and mechanism of bacterial resistance
Latino, Libera, Essoh, Christiane, Blouin, Yann, Vu Thien, Hoang, Pourcel, Christine
Published in PloS one (01.04.2014)
Published in PloS one (01.04.2014)
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Journal Article
Optimized Multilocus Variable-Number Tandem-Repeat Analysis Assay and Its Complementarity with Pulsed-Field Gel Electrophoresis and Multilocus Sequence Typing for Listeria monocytogenes Clone Identification and Surveillance
Chenal-Francisque, Viviane, Diancourt, Laure, Cantinelli, Thomas, Passet, Virginie, Tran-Hykes, Coralie, Bracq-Dieye, Hélène, Leclercq, Alexandre, Pourcel, Christine, Lecuit, Marc, Brisse, Sylvain
Published in Journal of Clinical Microbiology (01.06.2013)
Published in Journal of Clinical Microbiology (01.06.2013)
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Journal Article
The Basis for Natural Multiresistance to Phage in Pseudomonas aeruginosa
Pourcel, Christine, Midoux, Cédric, Vergnaud, Gilles, Latino, Libera
Published in Antibiotics (Basel) (18.06.2020)
Published in Antibiotics (Basel) (18.06.2020)
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Journal Article
Development of a Multiple Loci Variable Number of Tandem Repeats Analysis (MLVA) to Unravel the Intra-Pathovar Structure of Pseudomonas syringae pv. actinidiae Populations Worldwide
Ciarroni, Serena, Gallipoli, Lorenzo, Taratufolo, Maria C, Butler, Margi I, Poulter, Russell T M, Pourcel, Christine, Vergnaud, Gilles, Balestra, Giorgio M, Mazzaglia, Angelo
Published in PloS one (11.08.2015)
Published in PloS one (11.08.2015)
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Journal Article
Correction: Comparison of French and Worldwide Bacillus anthracis Strains Favors a Recent, Post-Columbian Origin of the Predominant North-American Clade
Vergnaud, Gilles, Girault, Guillaume, Thierry, Simon, Pourcel, Christine, Madani, Nora, Blouin, Yann
Published in PloS one (27.06.2017)
Published in PloS one (27.06.2017)
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Journal Article
Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats
Cui, Yujun, Li, Yanjun, Gorgé, Olivier, Platonov, Mikhail E, Yan, Yanfeng, Guo, Zhaobiao, Pourcel, Christine, Dentovskaya, Svetlana V, Balakhonov, Sergey V, Wang, Xiaoyi, Song, Yajun, Anisimov, Andrey P, Vergnaud, Gilles, Yang, Ruifu
Published in PloS one (09.07.2008)
Published in PloS one (09.07.2008)
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