Insights into global diatom distribution and diversity in the world’s ocean
Malviya, Shruti, Scalco, Eleonora, Audic, Stéphane, Vincent, Flora, Veluchamy, Alaguraj, Poulain, Julie, Wincker, Patrick, Iudicone, Daniele, de Vargas, Colomban, Bittner, Lucie, Zingone, Adriana, Bowler, Chris
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2016)
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Global Trends in Marine Plankton Diversity across Kingdoms of Life
Ibarbalz, Federico M., Henry, Nicolas, Brandão, Manoela C., Martini, Séverine, Busseni, Greta, Byrne, Hannah, Coelho, Luis Pedro, Endo, Hisashi, Gasol, Josep M., Gregory, Ann C., Mahé, Frédéric, Rigonato, Janaina, Royo-Llonch, Marta, Salazar, Guillem, Sanz-Sáez, Isabel, Scalco, Eleonora, Soviadan, Dodji, Zayed, Ahmed A., Zingone, Adriana, Labadie, Karine, Ferland, Joannie, Marec, Claudie, Kandels, Stefanie, Picheral, Marc, Dimier, Céline, Poulain, Julie, Pisarev, Sergey, Carmichael, Margaux, Pesant, Stéphane, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Follows, Mick, Gorsky, Gabriel, Grimsley, Nigel, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stéphane, Poulton, Nicole, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Wincker, Patrick, Babin, Marcel, Boss, Emmanuel, Iudicone, Daniele, Jaillon, Olivier, Acinas, Silvia G., Ogata, Hiroyuki, Pelletier, Eric, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Bopp, Laurent, de Vargas, Colomban, Karp-Boss, Lee, Wincker, Patrick, Lombard, Fabien, Bowler, Chris, Zinger, Lucie
Published in Cell (14.11.2019)
Published in Cell (14.11.2019)
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Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
Salazar, Guillem, Paoli, Lucas, Alberti, Adriana, Huerta-Cepas, Jaime, Ruscheweyh, Hans-Joachim, Cuenca, Miguelangel, Field, Christopher M., Coelho, Luis Pedro, Cruaud, Corinne, Engelen, Stefan, Gregory, Ann C., Labadie, Karine, Marec, Claudie, Pelletier, Eric, Royo-Llonch, Marta, Roux, Simon, Sánchez, Pablo, Uehara, Hideya, Zayed, Ahmed A., Zeller, Georg, Carmichael, Margaux, Dimier, Céline, Ferland, Joannie, Kandels, Stefanie, Picheral, Marc, Pisarev, Sergey, Poulain, Julie, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Follows, Michael, Gorsky, Gabriel, Grimsley, Nigel, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels-Lewis, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stephane, Poulton, Nicole, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Wincker, Patrick, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Bowler, Chris, de Vargas, Colomban, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Karp-Boss, Lee, Karsenti, Eric, Ogata, Hiroyuki, Pesant, Stephane, Speich, Sabrina, Sullivan, Matthew B., Wincker, Patrick, Sunagawa, Shinichi
Published in Cell (14.11.2019)
Published in Cell (14.11.2019)
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Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
Roux, Simon, Brum, Jennifer R., Dutilh, Bas E., Sunagawa, Shinichi, Duhaime, Melissa B., Loy, Alexander, Poulos, Bonnie T., Solonenko, Natalie, Lara, Elena, Poulain, Julie, Pesant, Stéphane, Kandels-Lewis, Stefanie, Dimier, Céline, Picheral, Marc, Searson, Sarah, Cruaud, Corinne, Alberti, Adriana, Duarte, Carlos M., Gasol, Josep M., Vaqué, Dolors, Bork, Peer, Acinas, Silvia G., Wincker, Patrick, Sullivan, Matthew B.
Published in Nature (London) (29.09.2016)
Published in Nature (London) (29.09.2016)
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Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome
Zayed, Ahmed A, Wainaina, James M, Dominguez-Huerta, Guillermo, Pelletier, Eric, Guo, Jiarong, Mohssen, Mohamed, Tian, Funing, Pratama, Akbar Adjie, Bolduc, Benjamin, Zablocki, Olivier, Cronin, Dylan, Solden, Lindsey, Delage, Erwan, Alberti, Adriana, Aury, Jean-Marc, Carradec, Quentin, da Silva, Corinne, Labadie, Karine, Poulain, Julie, Ruscheweyh, Hans-Joachim, Salazar, Guillem, Shatoff, Elan, Bundschuh, Ralf, Fredrick, Kurt, Kubatko, Laura S, Chaffron, Samuel, Culley, Alexander I, Sunagawa, Shinichi, Kuhn, Jens H, Wincker, Patrick, Sullivan, Matthew B, Acinas, Silvia G, Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Gorsky, Gabriel, Guidi, Lionel, Grimsley, Nigel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Poulton, Nicole, Pesant, Stéphane, Sardet, Christian, Speich, Sabrinia, Stemmann, Lars, Sullivan, Matthew B, Sungawa, Shinichi, Wincker, Patrick
Published in Science (American Association for the Advancement of Science) (08.04.2022)
Published in Science (American Association for the Advancement of Science) (08.04.2022)
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A global ocean atlas of eukaryotic genes
Carradec, Quentin, Pelletier, Eric, Da Silva, Corinne, Alberti, Adriana, Seeleuthner, Yoann, Blanc-Mathieu, Romain, Lima-Mendez, Gipsi, Rocha, Fabio, Tirichine, Leila, Labadie, Karine, Kirilovsky, Amos, Bertrand, Alexis, Engelen, Stefan, Madoui, Mohammed-Amin, Méheust, Raphaël, Poulain, Julie, Romac, Sarah, Richter, Daniel J., Yoshikawa, Genki, Dimier, Céline, Kandels-Lewis, Stefanie, Picheral, Marc, Searson, Sarah, Jaillon, Olivier, Aury, Jean-Marc, Karsenti, Eric, Sullivan, Matthew B., Sunagawa, Shinichi, Bork, Peer, Not, Fabrice, Hingamp, Pascal, Raes, Jeroen, Guidi, Lionel, Ogata, Hiroyuki, de Vargas, Colomban, Iudicone, Daniele, Bowler, Chris, Wincker, Patrick
Published in Nature communications (25.01.2018)
Published in Nature communications (25.01.2018)
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Structural and functional partitioning of bread wheat chromosome 3B
Choulet, Frédéric, Alberti, Adriana, Theil, Sébastien, Glover, Natasha, Barbe, Valérie, Daron, Josquin, Pingault, Lise, Sourdille, Pierre, Couloux, Arnaud, Paux, Etienne, Leroy, Philippe, Mangenot, Sophie, Guilhot, Nicolas, Le Gouis, Jacques, Balfourier, Francois, Alaux, Michael, Jamilloux, Véronique, Poulain, Julie, Durand, Céline, Bellec, Arnaud, Gaspin, Christine, Safar, Jan, Dolezel, Jaroslav, Rogers, Jane, Vandepoele, Klaas, Aury, Jean-Marc, Mayer, Klaus, Berges, Hélène, Quesneville, Hadi, Wincker, Patrick, Feuillet, Catherine
Published in Science (American Association for the Advancement of Science) (18.07.2014)
Published in Science (American Association for the Advancement of Science) (18.07.2014)
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Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export
Leblanc, Karine, Quéguiner, Bernard, Diaz, Frédéric, Cornet, Véronique, Michel-Rodriguez, Mónica, Durrieu de Madron, Xavier, Bowler, Chris, Malviya, Shruti, Thyssen, Melilotus, Grégori, Gérald, Rembauville, Mathieu, Grosso, Olivier, Poulain, Julie, de Vargas, Colomban, Pujo-Pay, Mireille, Conan, Pascal
Published in Nature communications (05.03.2018)
Published in Nature communications (05.03.2018)
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Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
Logares, Ramiro, Sunagawa, Shinichi, Salazar, Guillem, Cornejo‐Castillo, Francisco M, Ferrera, Isabel, Sarmento, Hugo, Hingamp, Pascal, Ogata, Hiroyuki, Vargas, Colomban, Lima‐Mendez, Gipsi, Raes, Jeroen, Poulain, Julie, Jaillon, Olivier, Wincker, Patrick, Kandels‐Lewis, Stefanie, Karsenti, Eric, Bork, Peer, Acinas, Silvia G
Published in Environmental microbiology (01.09.2014)
Published in Environmental microbiology (01.09.2014)
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Microbial community structure in hadal sediments: high similarity along trench axes and strong changes along redox gradients
Schauberger, Clemens, Glud, Ronnie N., Hausmann, Bela, Trouche, Blandine, Maignien, Lois, Poulain, Julie, Wincker, Patrick, Arnaud-Haond, Sophie, Wenzhöfer, Frank, Thamdrup, Bo
Published in The ISME Journal (01.12.2021)
Published in The ISME Journal (01.12.2021)
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Capturing the mutational landscape of the beta-lactamase TEM-1
Jacquier, Hervé, Birgy, André, Le Nagard, Hervé, Mechulam, Yves, Schmitt, Emmanuelle, Glodt, Jérémy, Bercot, Beatrice, Petit, Emmanuelle, Poulain, Julie, Barnaud, Guilène, Gros, Pierre-Alexis, Tenaillon, Olivier
Published in Proceedings of the National Academy of Sciences - PNAS (06.08.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (06.08.2013)
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The defensome of complex bacterial communities
Beavogui, Angelina, Lacroix, Auriane, Wiart, Nicolas, Poulain, Julie, Delmont, Tom O., Paoli, Lucas, Wincker, Patrick, Oliveira, Pedro H.
Published in Nature communications (08.03.2024)
Published in Nature communications (08.03.2024)
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Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding
Le Bescot, Noan, Mahé, Frédéric, Audic, Stéphane, Dimier, Céline, Garet, Marie‐José, Poulain, Julie, Wincker, Patrick, Vargas, Colomban, Siano, Raffaele
Published in Environmental microbiology (01.02.2016)
Published in Environmental microbiology (01.02.2016)
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Diversity and ecological footprint of Global Ocean RNA viruses
Dominguez-Huerta, Guillermo, Zayed, Ahmed A, Wainaina, James M, Guo, Jiarong, Tian, Funing, Pratama, Akbar Adjie, Bolduc, Benjamin, Mohssen, Mohamed, Zablocki, Olivier, Pelletier, Eric, Delage, Erwan, Alberti, Adriana, Aury, Jean-Marc, Carradec, Quentin, da Silva, Corinne, Labadie, Karine, Poulain, Julie, Bowler, Chris, Eveillard, Damien, Guidi, Lionel, Karsenti, Eric, Kuhn, Jens H, Ogata, Hiroyuki, Wincker, Patrick, Culley, Alexander, Chaffron, Samuel, Sullivan, Matthew B
Published in Science (American Association for the Advancement of Science) (10.06.2022)
Published in Science (American Association for the Advancement of Science) (10.06.2022)
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Biogeography and diversity of Collodaria (Radiolaria) in the global ocean
Biard, Tristan, Bigeard, Estelle, Audic, Stéphane, Poulain, Julie, Gutierrez-Rodriguez, Andres, Pesant, Stéphane, Stemmann, Lars, Not, Fabrice
Published in The ISME Journal (01.06.2017)
Published in The ISME Journal (01.06.2017)
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Convergent Evolution of Endosymbiont Differentiation in Dalbergioid and Inverted Repeat-Lacking Clade Legumes Mediated by Nodule-Specific Cysteine-Rich Peptides
Czernic, Pierre, Gully, Djamel, Cartieaux, Fabienne, Moulin, Lionel, Guefrachi, Ibtissem, Patrel, Delphine, Pierre, Olivier, Fardoux, Joël, Chaintreuil, Clémence, Nguyen, Phuong, Gressent, Frédéric, Da Silva, Corinne, Poulain, Julie, Wincker, Patrick, Rofidal, Valérie, Hem, Sonia, Barrière, Quentin, Arrighi, Jean-François, Mergaert, Peter, Giraud, Eric
Published in Plant physiology (Bethesda) (01.10.2015)
Published in Plant physiology (Bethesda) (01.10.2015)
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Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
Seeleuthner, Yoann, Mondy, Samuel, Lombard, Vincent, Carradec, Quentin, Pelletier, Eric, Wessner, Marc, Leconte, Jade, Mangot, Jean-François, Poulain, Julie, Labadie, Karine, Logares, Ramiro, Sunagawa, Shinichi, de Berardinis, Véronique, Salanoubat, Marcel, Dimier, Céline, Kandels-Lewis, Stefanie, Picheral, Marc, Searson, Sarah, Pesant, Stephane, Poulton, Nicole, Stepanauskas, Ramunas, Bork, Peer, Bowler, Chris, Hingamp, Pascal, Sullivan, Matthew B., Iudicone, Daniele, Massana, Ramon, Aury, Jean-Marc, Henrissat, Bernard, Karsenti, Eric, Jaillon, Olivier, Sieracki, Mike, de Vargas, Colomban, Wincker, Patrick
Published in Nature communications (22.01.2018)
Published in Nature communications (22.01.2018)
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Endogeic earthworms shape bacterial functional communities and affect organic matter mineralization in a tropical soil
Bernard, Laetitia, Chapuis-Lardy, Lydie, Razafimbelo, Tantely, Razafindrakoto, Malalatiana, Pablo, Anne-Laure, Legname, Elvire, Poulain, Julie, Brüls, Thomas, O'Donohue, Michael, Brauman, Alain, Chotte, Jean-Luc, Blanchart, Eric
Published in The ISME Journal (01.01.2012)
Published in The ISME Journal (01.01.2012)
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An Expressed Sequence Tag collection from the male antennae of the Noctuid moth Spodoptera littoralis: a resource for olfactory and pheromone detection research
Legeai, Fabrice, Malpel, Sébastien, Montagné, Nicolas, Monsempes, Christelle, Cousserans, François, Merlin, Christine, François, Marie-Christine, Maïbèche-Coisné, Martine, Gavory, Frédérick, Poulain, Julie, Jacquin-Joly, Emmanuelle
Published in BMC genomics (29.01.2011)
Published in BMC genomics (29.01.2011)
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Journal Article
Role for RNAi in the Selective Correction of DNA Methylation Defects
Teixeira, Felipe Karam, Heredia, Fabiana, Sarazin, Alexis, Roudier, François, Boccara, Martine, Ciaudo, Constance, Cruaud, Corinne, Poulain, Julie, Berdasco, Maria, Fraga, Mario F, Voinnet, Olivier, Wincker, Patrick, Esteller, Manel, Colot, Vincent
Published in Science (American Association for the Advancement of Science) (20.03.2009)
Published in Science (American Association for the Advancement of Science) (20.03.2009)
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