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Detection of single nucleotide polymorphisms in virus genomes assembled from high-throughput sequencing data: large-scale performance testing of sequence analysis strategies
Rollin, Johan, Bester, Rachelle, Brostaux, Yves, Caglayan, Kadriye, De Jonghe, Kris, Eichmeier, Ales, Foucart, Yoika, Haegeman, Annelies, Koloniuk, Igor, Kominek, Petr, Maree, Hans, Onder, Serkan, Posada Céspedes, Susana, Roumi, Vahid, Šafářová, Dana, Schumpp, Olivier, Ulubas Serce, Cigdem, Sõmera, Merike, Tamisier, Lucie, Vainio, Eeva, van der Vlugt, Rene AA, Massart, Sebastien
Published in PeerJ (San Francisco, CA) (16.08.2023)
Published in PeerJ (San Francisco, CA) (16.08.2023)
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Bioinformatics Meets Virology: The European Virus Bioinformatics Center’s Second Annual Meeting
Ibrahim, Bashar, Arkhipova, Ksenia, Andeweg, Arno, Posada-Céspedes, Susana, Enault, François, Gruber, Arthur, Koonin, Eugene, Kupczok, Anne, Lemey, Philippe, McHardy, Alice, McMahon, Dino, Pickett, Brett, Robertson, David, Scheuermann, Richard, Zhernakova, Alexandra, Zwart, Mark, Schönhuth, Alexander, Dutilh, Bas, Marz, Manja
Published in Viruses (14.05.2018)
Published in Viruses (14.05.2018)
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Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data
Nadeau, Sarah A, Vaughan, Timothy G, Beckmann, Christiane, Topolsky, Ivan, Chen, Chaoran, Hodcroft, Emma, Schär, Tobias, Nissen, Ina, Santacroce, Natascha, Burcklen, Elodie, Ferreira, Pedro, Jablonski, Kim Philipp, Posada-Céspedes, Susana, Capece, Vincenzo, Seidel, Sophie, Santamaria de Souza, Noemi, Martinez-Gomez, Julia M, Cheng, Phil, Bosshard, Philipp P, Levesque, Mitchell P, Kufner, Verena, Schmutz, Stefan, Zaheri, Maryam, Huber, Michael, Trkola, Alexandra, Cordey, Samuel, Laubscher, Florian, Gonçalves, Ana Rita, Aeby, Sébastien, Pillonel, Trestan, Jacot, Damien, Bertelli, Claire, Greub, Gilbert, Leuzinger, Karoline, Stange, Madlen, Mari, Alfredo, Roloff, Tim, Seth-Smith, Helena, Hirsch, Hans H, Egli, Adrian, Redondo, Maurice, Kobel, Olivier, Noppen, Christoph, du Plessis, Louis, Beerenwinkel, Niko, Neher, Richard A, Beisel, Christian, Stadler, Tanja
Published in Science translational medicine (25.01.2023)
Published in Science translational medicine (25.01.2023)
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Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART
Wan, Chenjie, Bachmann, Nadine, Mitov, Venelin, Blanquart, François, Céspedes, Susana Posada, Turk, Teja, Neumann, Kathrin, Beerenwinkel, Niko, Bogojeska, Jasmina, Fellay, Jacques, Roth, Volker, Böni, Jürg, Perreau, Matthieu, Klimkait, Thomas, Yerly, Sabine, Battegay, Manuel, Walti, Laura, Calmy, Alexandra, Vernazza, Pietro, Bernasconi, Enos, Cavassini, Matthias, Metzner, Karin J., Günthard, Huldrych F., Kouyos, Roger D.
Published in Nature communications (02.11.2020)
Published in Nature communications (02.11.2020)
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Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C
Posada-Céspedes, Susana, Van Zyl, Gert, Montazeri, Hesam, Kuipers, Jack, Rhee, Soo-Yon, Kouyos, Roger, Günthard, Huldrych F., Beerenwinkel, Niko
Published in PLoS computational biology (01.09.2021)
Published in PLoS computational biology (01.09.2021)
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Recent advances in inferring viral diversity from high-throughput sequencing data
Posada-Cespedes, Susana, Seifert, David, Beerenwinkel, Niko
Published in Virus research (15.07.2017)
Published in Virus research (15.07.2017)
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Glycosphingolipids are mediators of cancer plasticity through independent signaling pathways
Cumin, Cécile, Huang, Yen-Lin, Rossdam, Charlotte, Ruoff, Felix, Céspedes, Susana Posada, Liang, Ching-Yeu, Lombardo, Flavio C., Coelho, Ricardo, Rimmer, Natalie, Konantz, Martina, López, Mónica Núñez, Alam, Shahidul, Schmidt, Alexander, Calabrese, Diego, Fedier, Andre, Vlajnic, Tatjana, von Itzstein, Mark, Templin, Markus, Buettner, Falk F.R., Everest-Dass, Arun, Heinzelmann-Schwarz, Viola, Jacob, Francis
Published in Cell reports (Cambridge) (16.08.2022)
Published in Cell reports (Cambridge) (16.08.2022)
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Global disparities in SARS-CoV-2 genomic surveillance
Brito, Anderson F., Semenova, Elizaveta, Dudas, Gytis, Hassler, Gabriel W., Kalinich, Chaney C., Kraemer, Moritz U. G., Ho, Joses, Tegally, Houriiyah, Githinji, George, Agoti, Charles N., Matkin, Lucy E., Whittaker, Charles, Howden, Benjamin P., Sintchenko, Vitali, Zuckerman, Neta S., Mor, Orna, Blankenship, Heather M., de Oliveira, Tulio, Lin, Raymond T. P., Siqueira, Marilda Mendonça, Resende, Paola Cristina, Vasconcelos, Ana Tereza R., Spilki, Fernando R., Aguiar, Renato Santana, Alexiev, Ivailo, Ivanov, Ivan N., Philipova, Ivva, Carrington, Christine V. F., Sahadeo, Nikita S. D., Branda, Ben, Gurry, Céline, Maurer-Stroh, Sebastian, Naidoo, Dhamari, von Eije, Karin J., Perkins, Mark D., van Kerkhove, Maria, Hill, Sarah C., Sabino, Ester C., Pybus, Oliver G., Dye, Christopher, Bhatt, Samir, Flaxman, Seth, Suchard, Marc A., Grubaugh, Nathan D., Baele, Guy, Faria, Nuno R.
Published in Nature communications (16.11.2022)
Published in Nature communications (16.11.2022)
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Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
Alm, Erik, Broberg, Eeva K, Connor, Thomas, Hodcroft, Emma B, Komissarov, Andrey B, Maurer-Stroh, Sebastian, Melidou, Angeliki, Neher, Richard A, O’Toole, Áine, Pereyaslov, Dmitriy
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (13.08.2020)
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (13.08.2020)
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CARIOTIPO DEL TITÍ GRIS (Saguinus leucopus) MEDIANTE BANDAS R-REPLICATIVAS KARYOTYPE OF TITÍ GREY (Saguinus leucopus) THROUGH R-REPLICATIVE BANDS
Susana Posada Céspedes, Diana Milena Maturana Mena, Juan Bautista López Ortiz
Published in Revista Facultad Nacional de Agronomía, Medellín (01.06.2012)
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Published in Revista Facultad Nacional de Agronomía, Medellín (01.06.2012)
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Cell type-focused compound screen in human organoids reveals CK1 and MAPK11 inhibition protects cone photoreceptors from death
Spirig, Stefan E., Arteaga-Moreta, Valeria J., Raics, Zoltan, Posada-Céspedes, Susana, Chreng, Stephanie, Galuba, Olaf, Galuba, Inga, Claerr, Isabelle, Renner, Steffen, Utz, Larissa, Kleindienst, P. Timo, Volak, Adrienn, Imbach, Jannick, Malysheva, Svitlana, Siwicki, Rebecca A., Hahaut, Vincent, Hou, Yanyan, Picelli, Simone, Cattaneo, Marco, Jüttner, Josephine, Cowan, Cameron S., Duckely, Myriam, Baeschlin, Daniel K., Renner, Magdalena, Unterreiner, Vincent, Roska, Botond
Published in bioRxiv (19.10.2024)
Published in bioRxiv (19.10.2024)
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Within-patient genetic diversity of SARS-CoV-2
Kuipers, Jack, Batavia, Aashil A, Jablonski, Kim Philipp, Bayer, Fritz, Borgsmüller, Nico, Dondi, Arthur, Monica-Andreea Drăgan, Ferreira, Pedro, Jahn, Katharina, Lamberti, Lisa, Pirkl, Martin, Posada-Céspedes, Susana, Topolsky, Ivan, Nissen, Ina, Santacroce, Natascha, Burcklen, Elodie, Schär, Tobias, Capece, Vincenzo, Beckmann, Christiane, Kobel, Olivier, Noppen, Christoph, Redondo, Maurice, Nadeau, Sarah, Seidel, Sophie, Noemie Santamaria De Souza, Beisel, Christian, Stadler, Tanja, Beerenwinkel, Niko
Published in bioRxiv (12.10.2020)
Published in bioRxiv (12.10.2020)
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