Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows
Denisenko, Elena, Guo, Belinda B, Jones, Matthew, Hou, Rui, de Kock, Leanne, Lassmann, Timo, Poppe, Daniel, Clément, Olivier, Simmons, Rebecca K, Lister, Ryan, Forrest, Alistair R R
Published in Genome Biology (02.06.2020)
Published in Genome Biology (02.06.2020)
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Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability
de Mendoza, Alex, Nguyen, Trung Viet, Ford, Ethan, Poppe, Daniel, Buckberry, Sam, Pflueger, Jahnvi, Grimmer, Matthew R., Stolzenburg, Sabine, Bogdanovic, Ozren, Oshlack, Alicia, Farnham, Peggy J., Blancafort, Pilar, Lister, Ryan
Published in Genome Biology (26.07.2022)
Published in Genome Biology (26.07.2022)
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Embryonic Stem Cell-Derived Neurons as a Model System for Epigenome Maturation during Development
Martin, Sally, Poppe, Daniel, Olova, Nelly, O'Leary, Conor, Ivanova, Elena, Pflueger, Jahnvi, Dechka, Jennifer, Simmons, Rebecca K, Cooper, Helen M, Reik, Wolf, Lister, Ryan, Wolvetang, Ernst J
Published in Genes (22.04.2023)
Published in Genes (22.04.2023)
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A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation
Grubman, Alexandra, Chew, Gabriel, Ouyang, John F, Sun, Guizhi, Choo, Xin Yi, McLean, Catriona, Simmons, Rebecca K, Buckberry, Sam, Vargas-Landin, Dulce B, Poppe, Daniel, Pflueger, Jahnvi, Lister, Ryan, Rackham, Owen J L, Petretto, Enrico, Polo, Jose M
Published in Nature neuroscience (01.12.2019)
Published in Nature neuroscience (01.12.2019)
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Modelling human blastocysts by reprogramming fibroblasts into iBlastoids
Liu, Xiaodong, Tan, Jia Ping, Schröder, Jan, Aberkane, Asma, Ouyang, John F, Mohenska, Monika, Lim, Sue Mei, Sun, Yu B Y, Chen, Joseph, Sun, Guizhi, Zhou, Yichen, Poppe, Daniel, Lister, Ryan, Clark, Amander T, Rackham, Owen J L, Zenker, Jennifer, Polo, Jose M
Published in Nature (London) (25.03.2021)
Published in Nature (London) (25.03.2021)
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A modular dCas9-based recruitment platform for combinatorial epigenome editing
Swain, Tessa, Pflueger, Christian, Freytag, Saskia, Poppe, Daniel, Pflueger, Jahnvi, Nguyen, Trung Viet, Li, Ji Kevin, Lister, Ryan
Published in Nucleic acids research (11.01.2024)
Published in Nucleic acids research (11.01.2024)
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Development of an Electrochemical Hydrogen Contaminant Detector
Mukundan, Rangachary, Brosha, Eric L., Romero, Christopher J., Poppe, Daniel, Rockward, Tommy
Published in Journal of the Electrochemical Society (01.11.2020)
Published in Journal of the Electrochemical Society (01.11.2020)
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Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution
Herring, Charles A., Simmons, Rebecca K., Freytag, Saskia, Poppe, Daniel, Moffet, Joel J.D., Pflueger, Jahnvi, Buckberry, Sam, Vargas-Landin, Dulce B., Clément, Olivier, Echeverría, Enrique Goñi, Sutton, Gavin J., Alvarez-Franco, Alba, Hou, Rui, Pflueger, Christian, McDonald, Kerrie, Polo, Jose M., Forrest, Alistair R.R., Nowak, Anna K., Voineagu, Irina, Martelotto, Luciano, Lister, Ryan
Published in Cell (10.11.2022)
Published in Cell (10.11.2022)
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Small molecules enable highly efficient neuronal conversion of human fibroblasts
Ladewig, Julia, Mertens, Jerome, Kesavan, Jaideep, Doerr, Jonas, Poppe, Daniel, Glaue, Finnja, Herms, Stefan, Wernet, Peter, Kögler, Gesine, Müller, Franz-Josef, Koch, Philipp, Brüstle, Oliver
Published in Nature methods (01.06.2012)
Published in Nature methods (01.06.2012)
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Excitation-induced ataxin-3 aggregation in neurons from patients with Machado-Joseph disease
KOCH, Philipp, BREUER, Peter, HOFFMANN, Per, KLOCKGETHER, Thomas, EVERT, Bernd O, WÜLLNER, Ullrich, BRÜSTLE, Oliver, PEITZ, Michael, JUNGVERDORBEN, Johannes, KESAVAN, Jaideep, POPPE, Daniel, DOERR, Jonas, LADEWIG, Julia, MERTENS, Jerome, TÜTING, Thomas
Published in Nature (London) (22.12.2011)
Published in Nature (London) (22.12.2011)
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Transient naive reprogramming corrects hiPS cells functionally and epigenetically
Buckberry, Sam, Liu, Xiaodong, Poppe, Daniel, Tan, Jia Ping, Sun, Guizhi, Chen, Joseph, Nguyen, Trung Viet, de Mendoza, Alex, Pflueger, Jahnvi, Frazer, Thomas, Vargas-Landín, Dulce B, Paynter, Jacob M, Smits, Nathan, Liu, Ning, Ouyang, John F, Rossello, Fernando J, Chy, Hun S, Rackham, Owen J L, Laslett, Andrew L, Breen, James, Faulkner, Geoffrey J, Nefzger, Christian M, Polo, Jose M, Lister, Ryan
Published in Nature (London) (24.08.2023)
Published in Nature (London) (24.08.2023)
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Embryonic Stem Cell–Based Modeling of Tau Pathology in Human Neurons
Mertens, Jerome, Stüber, Kathrin, Poppe, Daniel, Doerr, Jonas, Ladewig, Julia, Brüstle, Oliver, Koch, Philipp
Published in The American journal of pathology (01.05.2013)
Published in The American journal of pathology (01.05.2013)
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The emergence of the brain non-CpG methylation system in vertebrates
de Mendoza, Alex, Poppe, Daniel, Buckberry, Sam, Pflueger, Jahnvi, Albertin, Caroline B, Daish, Tasman, Bertrand, Stephanie, de la Calle-Mustienes, Elisa, Gómez-Skarmeta, José Luis, Nery, Joseph R, Ecker, Joseph R, Baer, Boris, Ragsdale, Clifton W, Grützner, Frank, Escriva, Hector, Venkatesh, Byrappa, Bogdanovic, Ozren, Lister, Ryan
Published in Nature ecology & evolution (01.03.2021)
Published in Nature ecology & evolution (01.03.2021)
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Editors' Choice-Field Trials Testing of Mixed Potential Electrochemical Hydrogen Safety Sensors at Commercial California Hydrogen Filling Stations
Brosha, Eric L., Romero, Christopher J., Poppe, Daniel, Williamson, Todd L., Kreller, Cortney R., Mukundan, Rangachary, Glass, Robert S., Wu, Amanda S.
Published in Journal of the Electrochemical Society (01.01.2017)
Published in Journal of the Electrochemical Society (01.01.2017)
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Reprogramming roadmap reveals route to human induced trophoblast stem cells
Liu, Xiaodong, Ouyang, John F, Rossello, Fernando J, Tan, Jia Ping, Davidson, Kathryn C, Valdes, Daniela S, Schröder, Jan, Sun, Yu B Y, Chen, Joseph, Knaupp, Anja S, Sun, Guizhi, Chy, Hun S, Huang, Ziyi, Pflueger, Jahnvi, Firas, Jaber, Tano, Vincent, Buckberry, Sam, Paynter, Jacob M, Larcombe, Michael R, Poppe, Daniel, Choo, Xin Yi, O'Brien, Carmel M, Pastor, William A, Chen, Di, Leichter, Anna L, Naeem, Haroon, Tripathi, Pratibha, Das, Partha P, Grubman, Alexandra, Powell, David R, Laslett, Andrew L, David, Laurent, Nilsson, Susan K, Clark, Amander T, Lister, Ryan, Nefzger, Christian M, Martelotto, Luciano G, Rackham, Owen J L, Polo, Jose M
Published in Nature (London) (01.10.2020)
Published in Nature (London) (01.10.2020)
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Single-nucleus RNA sequencing of pre-malignant liver reveals disease-associated hepatocyte state with HCC prognostic potential
Carlessi, Rodrigo, Denisenko, Elena, Boslem, Ebru, Köhn-Gaone, Julia, Main, Nathan, Abu Bakar, N. Dianah B., Shirolkar, Gayatri D., Jones, Matthew, Beasley, Aaron B., Poppe, Daniel, Dwyer, Benjamin J., Jackaman, Connie, Tjiam, M. Christian, Lister, Ryan, Karin, Michael, Fallowfield, Jonathan A., Kendall, Timothy J., Forbes, Stuart J., Gray, Elin S., Olynyk, John K., Yeoh, George, Forrest, Alistair R.R., Ramm, Grant A., Febbraio, Mark A., Tirnitz-Parker, Janina E.E.
Published in Cell genomics (10.05.2023)
Published in Cell genomics (10.05.2023)
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Genome Editing in Neuroepithelial Stem Cells to Generate Human Neurons with High Adenosine‐Releasing Capacity
Poppe, Daniel, Doerr, Jonas, Schneider, Marion, Wilkens, Ruven, Steinbeck, Julius A., Ladewig, Julia, Tam, Allison, Paschon, David E., Gregory, Philip D., Reik, Andreas, Müller, Christa E., Koch, Philipp, Brüstle, Oliver
Published in Stem cells translational medicine (01.06.2018)
Published in Stem cells translational medicine (01.06.2018)
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(Invited) Field Trials Testing of Mixed Potential Electrochemical Hydrogen Safety Sensors at Commercial California Hydrogen Filling Stations
Brosha, Eric L., Romero, Christopher J., Poppe, Daniel, Williamson, Todd L., Kreller, Cortney R., Mukundan, Rangachary, Glass, Robert S., Wu, Amanda S.
Published in ECS transactions (01.01.2017)
Published in ECS transactions (01.01.2017)
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