Endoplasmic Reticulum Transport of Glutathione by Sec61 Is Regulated by Ero1 and Bip
Ponsero, Alise J., Igbaria, Aeid, Darch, Maxwell A., Miled, Samia, Outten, Caryn E., Winther, Jakob R., Palais, Gael, D’Autréaux, Benoit, Delaunay-Moisan, Agnès, Toledano, Michel B.
Published in Molecular cell (21.09.2017)
Published in Molecular cell (21.09.2017)
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Journal Article
The dynamic wound microbiome
Liu, Chunan, Ponsero, Alise J, Armstrong, David G, Lipsky, Benjamin A, Hurwitz, Bonnie L
Published in BMC medicine (24.11.2020)
Published in BMC medicine (24.11.2020)
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Journal Article
Reexamining the Function of Glutathione in Oxidative Protein Folding and Secretion
Delaunay-Moisan, Agnès, Ponsero, Alise, Toledano, Michel B
Published in Antioxidants & redox signaling (20.11.2017)
Published in Antioxidants & redox signaling (20.11.2017)
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Journal Article
Identification and quantitation of clinically relevant microbes in patient samples: Comparison of three k-mer based classifiers for speed, accuracy, and sensitivity
Watts, George S, Thornton, Jr, James E, Youens-Clark, Ken, Ponsero, Alise J, Slepian, Marvin J, Menashi, Emmanuel, Hu, Charles, Deng, Wuquan, Armstrong, David G, Reed, Spenser, Cranmer, Lee D, Hurwitz, Bonnie L
Published in PLoS computational biology (01.11.2019)
Published in PLoS computational biology (01.11.2019)
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Journal Article
Planet Microbe: a platform for marine microbiology to discover and analyze interconnected ‘omics and environmental data
Ponsero, Alise J, Bomhoff, Matthew, Blumberg, Kai, Youens-Clark, Ken, Herz, Nina M, Wood-Charlson, Elisha M, Delong, Edward F, Hurwitz, Bonnie L
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
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Journal Article
Bacteroides abundance drives birth mode dependent infant gut microbiota developmental trajectories
Matharu, Dollwin, Ponsero, Alise J., Dikareva, Evgenia, Korpela, Katri, Kolho, Kaija-Leena, de Vos, Willem M., Salonen, Anne
Published in Frontiers in microbiology (06.10.2022)
Published in Frontiers in microbiology (06.10.2022)
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Journal Article
Evaluation of computational phage detection tools for metagenomic datasets
Schackart, 3rd, Kenneth E, Graham, Jessica B, Ponsero, Alise J, Hurwitz, Bonnie L
Published in Frontiers in microbiology (25.01.2023)
Published in Frontiers in microbiology (25.01.2023)
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Journal Article
A cohort study in family triads: impact of gut microbiota composition and early life exposures on intestinal resistome during the first two years of life
Jokela, Roosa, Pärnänen, Katariina MM, Ponsero, Alise J, Lahti, Leo, Kolho, Kaija-Leena, de Vos, Willem M, Salonen, Anne
Published in Gut microbes (31.12.2024)
Published in Gut microbes (31.12.2024)
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Journal Article
Ontology-Enriched Specifications Enabling Findable, Accessible, Interoperable, and Reusable Marine Metagenomic Datasets in Cyberinfrastructure Systems
Blumberg, Kai L, Ponsero, Alise J, Bomhoff, Matthew, Wood-Charlson, Elisha M, DeLong, Edward F, Hurwitz, Bonnie L
Published in Frontiers in microbiology (08.12.2021)
Published in Frontiers in microbiology (08.12.2021)
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Journal Article
Phage hunters: Computational strategies for finding phages in large-scale ‘omics datasets
Hurwitz, Bonnie L., Ponsero, Alise, Thornton, James, U’Ren, Jana M.
Published in Virus research (15.01.2018)
Published in Virus research (15.01.2018)
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Journal Article
Human milk oligosaccharide composition is affected by season and parity and associates with infant gut microbiota in a birth mode dependent manner in a Finnish birth cohort
Matharu, Dollwin, Ponsero, Alise J., Lengyel, Marton, Meszaros-Matwiejuk, Agnes, Kolho, Kaija-Leena, de Vos, Willem M., Molnar-Gabor, Dora, Salonen, Anne
Published in EBioMedicine (01.06.2024)
Published in EBioMedicine (01.06.2024)
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Journal Article
Sources of gut microbiota variation in a large longitudinal Finnish infant cohort
Jokela, Roosa, Ponsero, Alise J., Dikareva, Evgenia, Wei, Xiaodong, Kolho, Kaija-Leena, Korpela, Katri, de Vos, Willem M., Salonen, Anne
Published in EBioMedicine (01.08.2023)
Published in EBioMedicine (01.08.2023)
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Journal Article
Libra: scalable k-mer–based tool for massive all-vs-all metagenome comparisons
Choi, Illyoung, Ponsero, Alise J, Bomhoff, Matthew, Youens-Clark, Ken, Hartman, John H, Hurwitz, Bonnie L
Published in Gigascience (01.02.2019)
Published in Gigascience (01.02.2019)
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Journal Article
Fecal microbiota transplantation influences microbiota without connection to symptom relief in irritable bowel syndrome patients
Hartikainen, Anna K, Jalanka, Jonna, Lahtinen, Perttu, Ponsero, Alise J, Mertsalmi, Tuomas, Finnegan, Laura, Crispie, Fiona, Cotter, Paul D, Arkkila, Perttu, Satokari, Reetta
Published in NPJ biofilms and microbiomes (28.08.2024)
Published in NPJ biofilms and microbiomes (28.08.2024)
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Journal Article
Ten simple rules for organizing a data science workshop
Ponsero, Alise, Bartelme, Ryan, de Oliveira Almeida, Gustavo, Bigelow, Alex, Tuteja, Reetu, Ellingson, Holly, Swetnam, Tyson, Merchant, Nirav, Oxnam, Maliaca, Lyons, Eric
Published in PLoS computational biology (22.10.2020)
Published in PLoS computational biology (22.10.2020)
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Journal Article
iMicrobe: Tools and data-driven discovery platform for the microbiome sciences
Youens-Clark, Ken, Bomhoff, Matt, Ponsero, Alise J, Wood-Charlson, Elisha M, Lynch, Joshua, Choi, Illyoung, Hartman, John H, Hurwitz, Bonnie L
Published in Gigascience (01.07.2019)
Published in Gigascience (01.07.2019)
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Journal Article
Cyanolichen microbiome contains novel viruses that encode genes to promote microbial metabolism
Ponsero, Alise J, Hurwitz, Bonnie L, Magain, Nicolas, Miadlikowska, Jolanta, Lutzoni, François, U’Ren, Jana M
Published in ISME Communications (01.12.2021)
Published in ISME Communications (01.12.2021)
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Journal Article
Web Resource
An extended catalog of integrated prophages in the infant and adult fecal microbiome shows high prevalence of lysogeny
Dikareva, Evgenia, Matharu, Dollwin, Lahtinen, Emilia, Kolho, Kaija-Leena, De Vos, Willem M., Salonen, Anne, Ponsero, Alise J.
Published in Frontiers in microbiology (05.09.2023)
Published in Frontiers in microbiology (05.09.2023)
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Journal Article