Polarizable Atomic Multipole-Based AMOEBA Force Field for Proteins
Shi, Yue, Xia, Zhen, Zhang, Jiajing, Best, Robert, Wu, Chuanjie, Ponder, Jay W, Ren, Pengyu
Published in Journal of chemical theory and computation (10.09.2013)
Published in Journal of chemical theory and computation (10.09.2013)
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Journal Article
AMOEBA Polarizable Atomic Multipole Force Field for Nucleic Acids
Zhang, Changsheng, Lu, Chao, Jing, Zhifeng, Wu, Chuanjie, Piquemal, Jean-Philip, Ponder, Jay W, Ren, Pengyu
Published in Journal of chemical theory and computation (10.04.2018)
Published in Journal of chemical theory and computation (10.04.2018)
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Journal Article
Revised Parameters for the AMOEBA Polarizable Atomic Multipole Water Model
Laury, Marie L, Wang, Lee-Ping, Pande, Vijay S, Head-Gordon, Teresa, Ponder, Jay W
Published in The journal of physical chemistry. B (23.07.2015)
Published in The journal of physical chemistry. B (23.07.2015)
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Journal Article
Polarizable Water Potential Derived from a Model Electron Density
Rackers, Joshua A, Silva, Roseane R, Wang, Zhi, Ponder, Jay W
Published in Journal of chemical theory and computation (09.11.2021)
Published in Journal of chemical theory and computation (09.11.2021)
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Journal Article
Current Status of the AMOEBA Polarizable Force Field
Ponder, Jay W, Wu, Chuanjie, Ren, Pengyu, Pande, Vijay S, Chodera, John D, Schnieders, Michael J, Haque, Imran, Mobley, David L, Lambrecht, Daniel S, DiStasio, Robert A, Head-Gordon, Martin, Clark, Gary N. I, Johnson, Margaret E, Head-Gordon, Teresa
Published in The journal of physical chemistry. B (04.03.2010)
Published in The journal of physical chemistry. B (04.03.2010)
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Journal Article
A structural basis for lithium and substrate binding of an inositide phosphatase
Dollins, D. Eric, Xiong, Jian-Ping, Endo-Streeter, Stuart, Anderson, David E., Bansal, Vinay S., Ponder, Jay W., Ren, Yi, York, John D.
Published in The Journal of biological chemistry (01.01.2021)
Published in The Journal of biological chemistry (01.01.2021)
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Journal Article
Evaluation of Museum Collection Data for Use in Biodiversity Assessment
Ponder, W. F., Carter, G. A., Flemons, P., Chapman, R. R.
Published in Conservation biology (01.06.2001)
Published in Conservation biology (01.06.2001)
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Journal Article
Four desert waters: Setting arid zone wetland conservation priorities through understanding patterns of endemism
Fensham, R.J., Silcock, J.L., Kerezsy, A., Ponder, W.
Published in Biological conservation (01.10.2011)
Published in Biological conservation (01.10.2011)
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Journal Article
Ion Solvation Thermodynamics from Simulation with a Polarizable Force Field
Grossfield, Alan, Ren, Pengyu, Ponder, Jay W
Published in Journal of the American Chemical Society (17.12.2003)
Published in Journal of the American Chemical Society (17.12.2003)
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Journal Article
Molecular phylogenetics of Caenogastropoda (Gastropoda: Mollusca)
Colgan, D.J., Ponder, W.F., Beacham, E., Macaranas, J.
Published in Molecular phylogenetics and evolution (01.03.2007)
Published in Molecular phylogenetics and evolution (01.03.2007)
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Journal Article
Polarizable Atomic Multipole-Based Molecular Mechanics for Organic Molecules
Ren, Pengyu, Wu, Chuanjie, Ponder, Jay W
Published in Journal of chemical theory and computation (11.10.2011)
Published in Journal of chemical theory and computation (11.10.2011)
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Journal Article
MSCALE: A General Utility for Multiscale Modeling
Woodcock, H. Lee, Miller, Benjamin T, Hodoscek, Milan, Okur, Asim, Larkin, Joseph D, Ponder, Jay W, Brooks, Bernard R
Published in Journal of chemical theory and computation (12.04.2011)
Published in Journal of chemical theory and computation (12.04.2011)
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Journal Article
Analysis and Application of Potential Energy Smoothing and Search Methods for Global Optimization
Pappu, Rohit V, Hart, Reece K, Ponder, Jay W
Published in The journal of physical chemistry. B (26.11.1998)
Published in The journal of physical chemistry. B (26.11.1998)
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Journal Article
Tinker 8: Software Tools for Molecular Design
Rackers, Joshua A, Wang, Zhi, Lu, Chao, Laury, Marie L, Lagardère, Louis, Schnieders, Michael J, Piquemal, Jean-Philip, Ren, Pengyu, Ponder, Jay W
Published in Journal of chemical theory and computation (09.10.2018)
Published in Journal of chemical theory and computation (09.10.2018)
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Journal Article