Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data
Alaux, Michael, Rogers, Jane, Letellier, Thomas, Flores, Raphaël, Alfama, Françoise, Pommier, Cyril, Mohellibi, Nacer, Durand, Sophie, Kimmel, Erik, Michotey, Célia, Guerche, Claire, Loaec, Mikaël, Lainé, Mathilde, Steinbach, Delphine, Choulet, Frédéric, Rimbert, Hélène, Leroy, Philippe, Guilhot, Nicolas, Salse, Jérôme, Feuillet, Catherine, Paux, Etienne, Eversole, Kellye, Adam-Blondon, Anne-Françoise, Quesneville, Hadi
Published in Genome Biology (17.08.2018)
Published in Genome Biology (17.08.2018)
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Dealing with multi-source and multi-scale information in plant phenomics: the ontology-driven Phenotyping Hybrid Information System
Neveu, Pascal, Tireau, Anne, Hilgert, Nadine, Nègre, Vincent, Mineau‐Cesari, Jonathan, Brichet, Nicolas, Chapuis, Romain, Sanchez, Isabelle, Pommier, Cyril, Charnomordic, Brigitte, Tardieu, François, Cabrera‐Bosquet, Llorenç
Published in The New phytologist (01.01.2019)
Published in The New phytologist (01.01.2019)
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Towards recommendations for metadata and data handling in plant phenotyping
Krajewski, Paweł, Chen, Dijun, Ćwiek, Hanna, van Dijk, Aalt D.J., Fiorani, Fabio, Kersey, Paul, Klukas, Christian, Lange, Matthias, Markiewicz, Augustyn, Nap, Jan Peter, van Oeveren, Jan, Pommier, Cyril, Scholz, Uwe, van Schriek, Marco, Usadel, Björn, Weise, Stephan
Published in Journal of experimental botany (01.09.2015)
Published in Journal of experimental botany (01.09.2015)
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The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems
Arnaud, Elizabeth, Laporte, Marie-Angélique, Kim, Soonho, Aubert, Céline, Leonelli, Sabina, Miro, Berta, Cooper, Laurel, Jaiswal, Pankaj, Kruseman, Gideon, Shrestha, Rosemary, Buttigieg, Pier Luigi, Mungall, Christopher J., Pietragalla, Julian, Agbona, Afolabi, Muliro, Jacqueline, Detras, Jeffrey, Hualla, Vilma, Rathore, Abhishek, Das, Roma Rani, Dieng, Ibnou, Bauchet, Guillaume, Menda, Naama, Pommier, Cyril, Shaw, Felix, Lyon, David, Mwanzia, Leroy, Juarez, Henry, Bonaiuti, Enrico, Chiputwa, Brian, Obileye, Olatunbosun, Auzoux, Sandrine, Yeumo, Esther Dzalé, Mueller, Lukas A., Silverstein, Kevin, Lafargue, Alexandra, Antezana, Erick, Devare, Medha, King, Brian
Published in Gene Expression Patterns (09.10.2020)
Published in Gene Expression Patterns (09.10.2020)
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Measures for interoperability of phenotypic data: minimum information requirements and formatting
Ćwiek-Kupczyńska, Hanna, Altmann, Thomas, Arend, Daniel, Arnaud, Elizabeth, Chen, Dijun, Cornut, Guillaume, Fiorani, Fabio, Frohmberg, Wojciech, Junker, Astrid, Klukas, Christian, Lange, Matthias, Mazurek, Cezary, Nafissi, Anahita, Neveu, Pascal, van Oeveren, Jan, Pommier, Cyril, Poorter, Hendrik, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Scholz, Uwe, van Schriek, Marco, Seren, Ümit, Usadel, Björn, Weise, Stephan, Kersey, Paul, Krajewski, Paweł
Published in Plant methods (09.11.2016)
Published in Plant methods (09.11.2016)
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Editorial: Phenotyping; From Plant, to Data, to Impact and Highlights of the International Plant Phenotyping Symposium - IPPS 2018
Pommier, Cyril, Garnett, Trevor, Lawrence-Dill, Carolyn J, Pridmore, Tony, Watt, Michelle, Pieruschka, Roland, Ghamkhar, Kioumars
Published in Frontiers in plant science (04.12.2020)
Published in Frontiers in plant science (04.12.2020)
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RepetDB: a unified resource for transposable element references
Amselem, Joëlle, Cornut, Guillaume, Choisne, Nathalie, Alaux, Michael, Alfama-Depauw, Françoise, Jamilloux, Véronique, Maumus, Florian, Letellier, Thomas, Luyten, Isabelle, Pommier, Cyril, Adam-Blondon, Anne-Françoise, Quesneville, Hadi
Published in Mobile DNA (29.01.2019)
Published in Mobile DNA (29.01.2019)
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The walnut genetic resources of INRA: chronological phenotypic data and ontology
Bernard, Anthony, Barreneche, Teresa, Delmas, Marine, Durand, Sophie, Pommier, Cyril, Lheureux, Fabrice, Tranchand, Eloïse, Naudin, Marianne, Dirlewanger, Elisabeth
Published in BMC research notes (17.10.2019)
Published in BMC research notes (17.10.2019)
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Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR [version 2; peer review: 2 approved]
Beier, Sebastian, Fiebig, Anne, Pommier, Cyril, Liyanage, Isuru, Lange, Matthias, Kersey, Paul J., Weise, Stephan, Finkers, Richard, Koylass, Baron, Cezard, Timothee, Courtot, Mélanie, Contreras-Moreira, Bruno, Naamati, Guy, Dyer, Sarah, Scholz, Uwe
Published in F1000 research (2022)
Published in F1000 research (2022)
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Journal Article
Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR [version 1; peer review: 2 approved with reservations]
Beier, Sebastian, Fiebig, Anne, Pommier, Cyril, Liyanage, Isuru, Lange, Matthias, Kersey, Paul J, Weise, Stephan, Finkers, Richard, Koylass, Baron, Cezard, Timothee, Courtot, Mélanie, Contreras-Moreira, Bruno, Naamati, Guy, Dyer, Sarah, Scholz, Uwe
Published in F1000 research (2022)
Published in F1000 research (2022)
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Developing data interoperability using standards: A wheat community use case
Dzale Yeumo, Esther, Alaux, Michael, Arnaud, Elizabeth, Aubin, Sophie, Baumann, Ute, Buche, Patrice, Cooper, Laurel, Ćwiek-Kupczyńska, Hanna, Davey, Robert P., Fulss, Richard Allan, Jonquet, Clement, Laporte, Marie-Angélique, Larmande, Pierre, Pommier, Cyril, Protonotarios, Vassilis, Reverte, Carmen, Shrestha, Rosemary, Subirats, Imma, Venkatesan, Aravind, Whan, Alex, Quesneville, Hadi
Published in F1000 research (2017)
Published in F1000 research (2017)
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Journal Article
GnpIS: an information system to integrate genetic and genomic data from plants and fungi
Steinbach, Delphine, Alaux, Michael, Amselem, Joelle, Choisne, Nathalie, Durand, Sophie, Flores, Raphaël, Keliet, Aminah-Olivia, Kimmel, Erik, Lapalu, Nicolas, Luyten, Isabelle, Michotey, Célia, Mohellibi, Nacer, Pommier, Cyril, Reboux, Sébastien, Valdenaire, Dorothée, Verdelet, Daphné, Quesneville, Hadi
Published in Database : the journal of biological databases and curation (2013)
Published in Database : the journal of biological databases and curation (2013)
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transPLANT Resources for Triticeae Genomic Data
Spannagl, Manuel, Alaux, Michael, Lange, Matthias, Bolser, Daniel M., Bader, Kai C., Letellier, Thomas, Kimmel, Erik, Flores, Raphael, Pommier, Cyril, Kerhornou, Arnaud, Walts, Brandon, Nussbaumer, Thomas, Grabmuller, Christoph, Chen, Jinbo, Colmsee, Christian, Beier, Sebastian, Mascher, Martin, Schmutzer, Thomas, Arend, Daniel, Thanki, Anil, Ramirez‐Gonzalez, Ricardo, Ayling, Martin, Ayling, Sarah, Caccamo, Mario, Mayer, Klaus F.X., Scholz, Uwe, Steinbach, Delphine, Quesneville, Hadi, Kersey, Paul J.
Published in The plant genome (01.03.2016)
Published in The plant genome (01.03.2016)
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Developing data interoperability using standards: A wheat community use case [version 1; peer review: 1 approved]
Dzale Yeumo, Esther, Alaux, Michael, Arnaud, Elizabeth, Aubin, Sophie, Baumann, Ute, Buche, Patrice, Cooper, Laurel, Ćwiek-Kupczyńska, Hanna, Davey, Robert P, Fulss, Richard Allan, Jonquet, Clement, Laporte, Marie-Angélique, Larmande, Pierre, Pommier, Cyril, Protonotarios, Vassilis, Reverte, Carmen, Shrestha, Rosemary, Subirats, Imma, Venkatesan, Aravind, Whan, Alex, Quesneville, Hadi
Published in F1000 research (2017)
Published in F1000 research (2017)
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ELIXIR biovalidator for semantic validation of life science metadata
Liyanage, Isuru, Burdett, Tony, Droesbeke, Bert, Erdos, Karoly, Fernandez, Rolando, Gray, Alasdair, Haseeb, Muhammad, Jupp, Simon, Penim, Flavia, Pommier, Cyril, Rocca-Serra, Philippe, Courtot, Mélanie, Coppens, Frederik
Published in Bioinformatics (26.05.2022)
Published in Bioinformatics (26.05.2022)
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Journal Article
ELIXIR‐EXCELERATE: establishing Europe's data infrastructure for the life science research of the future
Harrow, Jennifer, Hancock, John, Blomberg, Niklas, Blomberg, Niklas, Brunak, Søren, Capella‐Gutierrez, Salvador, Durinx, Christine, Evelo, Chris T., Goble, Carole, Gut, Ivo, Ison, Jon, Keane, Thomas, Leskošek, Brane, Matyska, Luděk, McEntyre, Johanna, Miguel, Célia, Navarro, Arcadi, Newhouse, Steven, Nyrönen, Tommi, Palagi, Patricia, Persson, Bengt, Pommier, Cyril, Rambla, Jordi, Roos, Marco, Rustici, Gabriella, Smith, Andrew, Valencia, Alfonso, van Gelder, Celia, Vondrasek, Jiri, Willassen, Nils Peder, Arenas, Juan, Parkinson, Helen, Finn, Robert D, Beltran, Sergi, Matalonga, Leslie, Hurst, Hannah, Kersey, Paul, Lappalainen, Ilkka, Kahlem, Pascal, Saunders, Gary, Sarntivijai, Sirarat, Drysdale, Rachel, Tedds, Johnathan, Lanfear, Jeremy, Harrow, Jennifer
Published in The EMBO journal (15.03.2021)
Published in The EMBO journal (15.03.2021)
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Journal Article
Mapping bread wheat trait ontologies for semantic interoperability [version 1; peer review: awaiting peer review]
Nédellec, Claire, Aubin, Sophie, Sauvion, Clara, Ibanescu, Liliana, Bravo, Sonia, Le Gouis, Jacques, Marcel, Thierry C., Pommier, Cyril, Bossy, Robert, Alaux, Michaël
Published in F1000 research (2024)
Published in F1000 research (2024)
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SyntenyViewer: a comparative genomics-driven translational research tool
Flores, Raphael, Huneau, Cécile, Burlot, Laura, Lainé, Mathilde, Kimmel, Erik, Pommier, Cyril, Alaux, Michael, Adam-Blondon, Anne-Françoise, Pont, Caroline, Quesneville, Hadi, Salse, Jerome
Published in Database : the journal of biological databases and curation (09.05.2023)
Published in Database : the journal of biological databases and curation (09.05.2023)
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Journal Article
Corrigendum: Towards recommendations for metadata and data handling in plant phenotyping
Krajewski, Paweł, Chen, Dijun, Ćwiek, Hanna, van Dijk, Aalt D J, Fiorani, Fabio, Kersey, Paul, Klukas, Christian, Lange, Matthias, Markiewicz, Augustyn, Nap, Jan Peter, van Oeveren, Jan, Pommier, Cyril, Scholz, Uwe, van Schriek, Marco, Usadel, Björn, Weise, Stephan
Published in Journal of experimental botany (24.03.2018)
Published in Journal of experimental botany (24.03.2018)
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Journal Article
Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS
Pommier, C, Michotey, C, Cornut, G, Roumet, P, Duchêne, E, Flores, R, Lebreton, A, Alaux, M, Durand, S, Kimmel, E, Letellier, T, Merceron, G, Laine, M, Guerche, C, Loaec, M, Steinbach, D, Laporte, M A, Arnaud, E, Quesneville, H, Adam-Blondon, A F
Published in Plant phenomics (01.01.2019)
Published in Plant phenomics (01.01.2019)
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