On a Numerical Model of a Circadian Oscillator
Akinshin, A. A, Ayupova, N. B, Golubyatnikov, V. P, Kirillova, N. E, Podkolodnaya, O. A, Podkolodnyy, N. L
Published in Numerical analysis and applications (01.09.2022)
Published in Numerical analysis and applications (01.09.2022)
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Human_SNP_TATAdb: a database of SNPs that statistically significantly change the affinity of the TATA-binding protein to human gene promoters: genome-wide analysis and use cases
Filonov, S V, Podkolodnyy, N L, Podkolodnaya, O A, Tverdokhleb, N N, Ponomarenko, P M, Rasskazov, D A, Bogomolov, A G, Ponomarenko, M P
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.12.2023)
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.12.2023)
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Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL
Heinemeyer, T., Wingender, E., Reuter, I., Hermjakob, H., Kel, A. E., Kel, O. V., Ignatieva, E. V., Ananko, E. A., Podkolodnaya, O. A., Kolpakov, F. A., Podkolodny, N. L., Kolchanov, N. A.
Published in Nucleic acids research (01.01.1998)
Published in Nucleic acids research (01.01.1998)
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Transcription Regulatory Regions Database (TRRD): its status in 2002
Kolchanov, N A, Ignatieva, E V, Ananko, E A, Podkolodnaya, O A, Stepanenko, I L, Merkulova, T I, Pozdnyakov, M A, Podkolodny, N L, Naumochkin, A N, Romashchenko, A G
Published in Nucleic acids research (01.01.2002)
Published in Nucleic acids research (01.01.2002)
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GeneNet in 2005
Ananko, E. A., Podkolodny, N. L., Stepanenko, I. L., Podkolodnaya, O. A., Rasskazov, D. A., Miginsky, D. S., Likhoshvai, V. A., Ratushny, A. V., Podkolodnaya, N. N., Kolchanov, N. A.
Published in Nucleic acids research (01.01.2005)
Published in Nucleic acids research (01.01.2005)
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Journal Article
Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis
Levitsky, Victor G., Podkolodnaya, Olga A., Kolchanov, Nikolay A., Podkolodny, Nikolay L.
Published in Bioinformatics (01.11.2001)
Published in Bioinformatics (01.11.2001)
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On Conditions for the Existence of Cycles in Two Models of a Circadian Oscillator of Mammals
Golubyatnikov, V. P., Podkolodnaya, O. A., Podkolodnyy, N. L., Ayupova, N. B., Kirillova, N. E., Yunosheva, E. V.
Published in Journal of applied and industrial mathematics (2021)
Published in Journal of applied and industrial mathematics (2021)
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Russian Science Foundation grant No. 20-14-00140 supported this study. The authors are thankful to the multi-access Center “Bioinformatics” for the use of computational resources as supported by Russian government project FWNR-2022-0020 and the Russian Federal Science and Technology Program for the Development of Genetic Technologies
Vishnevsky, O. V., Chadaeva, I. V., Sharypova, E. B., Khandaev, B. M., Zolotareva, K. A., Kazachek, A. V., Ponomarenko, P. M., Podkolodny, N. L., Rasskazov, D. A., Zemlyanskaya, E. V., Bogomolov, A. G., Podkolodnaya, O. A., Savinkova, L. K., Ponomarenko, M. P.
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (04.01.2023)
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (04.01.2023)
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Promoters of genes encoding β-amylase, albumin and globulin in food plants have weaker affinity for TATA-binding protein as compared to non-food plants: in silico analysis
Vishnevsky, O V, Chadaeva, I V, Sharypova, E B, Khandaev, B M, Zolotareva, K A, Kazachek, A V, Ponomarenko, P M, Podkolodny, N L, Rasskazov, D A, Bogomolov, A G, Podkolodnaya, O A, Savinkova, L K, Zemlyanskaya, E V, Ponomarenko, M P
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.12.2022)
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.12.2022)
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Ontologies in bioinformatics and systems biology
Podkolodnyy, N. L., Podkolodnaya, O. A.
Published in Russian journal of genetics. Applied research (01.11.2016)
Published in Russian journal of genetics. Applied research (01.11.2016)
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Analysis of the circadian rhythm of biological processes in mouse liver and kidney
Podkolodnyy, I. N., Tverdokhleb, N. N., Podkolodnaya, O. A.
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.01.2018)
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.01.2018)
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Computational model of circadian oscillator in mammals: Interaction with NAD+/SIRT1 system and age-related changes in the expression of circadian oscillator genes
Podkolodnyy, N. L., Tverdokhleb, N. N., Podkolodnaya, O. A.
Published in Russian journal of genetics. Applied research (01.07.2017)
Published in Russian journal of genetics. Applied research (01.07.2017)
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Journal Article
GeneNet: a database on structure and functional organisation of gene networks
Ananko, E A, Podkolodny, N L, Stepanenko, I L, Ignatieva, E V, Podkolodnaya, O A, Kolchanov, N A
Published in Nucleic acids research (01.01.2002)
Published in Nucleic acids research (01.01.2002)
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Computational model for mammalian circadian oscillator: interacting with NAD+/SIRT1 pathway and age-related changes in gene expression of circadian oscillator
Podkolodnyy, N. L., Tverdokhleb, N. N., Podkolodnaya, O. A.
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.02.2017)
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (01.02.2017)
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Transcription regulatory regions database (TRRD): its status in 2000
Kolchanov, N A, Podkolodnaya, O A, Ananko, E A, Ignatieva, E V, Stepanenko, I L, Kel-Margoulis, O V, Kel, A E, Merkulova, T I, Goryachkovskaya, T N, Busygina, T V, Kolpakov, F A, Podkolodny, N L, Naumochkin, A N, Korostishevskaya, I M, Romashchenko, A G, Overton, G C
Published in Nucleic acids research (01.01.2000)
Published in Nucleic acids research (01.01.2000)
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Ontologies in bioinformatics and systems biology
N. L. Podkolodnyy, O. A. Podkolodnaya
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (02.01.2016)
Published in Vavilovskiĭ zhurnal genetiki i selekt͡s︡ii (02.01.2016)
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Journal Article
Nucleosome formation potential of exons, introns, and Alu repeats
Levitsky, Victor G., Podkolodnaya, Olga A., Kolchanov, Nikolay A., Podkolodny, Nikolay L.
Published in Bioinformatics (01.11.2001)
Published in Bioinformatics (01.11.2001)
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Journal Article
Regulatory genomics: Combined experimental and computational approaches
Ignatieva, E. V., Podkolodnaya, O. A., Orlov, Yu. L., Vasiliev, G. V., Kolchanov, N. A.
Published in Russian journal of genetics (01.04.2015)
Published in Russian journal of genetics (01.04.2015)
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