Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis
Blevins, Todd, Podicheti, Ram, Mishra, Vibhor, Marasco, Michelle, Wang, Jing, Rusch, Doug, Tang, Haixu, Pikaard, Craig S
Published in eLife (02.10.2015)
Published in eLife (02.10.2015)
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Journal Article
The coral pathogen Vibrio coralliilyticus uses a T6SS to secrete a group of novel anti-eukaryotic effectors that contribute to virulence
Mass, Shir, Cohen, Hadar, Podicheti, Ram, Rusch, Douglas B, Gerlic, Motti, Ushijima, Blake, van Kessel, Julia C, Bosis, Eran, Salomon, Dor
Published in PLoS biology (01.09.2024)
Published in PLoS biology (01.09.2024)
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Journal Article
Exploring breast tissue microbial composition and the association with breast cancer risk factors
German, Rana, Marino, Natascia, Hemmerich, Chris, Podicheti, Ram, Rusch, Douglas B, Stiemsma, Leah T, Gao, Hongyu, Xuei, Xiaoling, Rockey, Pam, Storniolo, Anna Maria
Published in Breast cancer research : BCR (10.07.2023)
Published in Breast cancer research : BCR (10.07.2023)
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Journal Article
A Two-Step Process for Epigenetic Inheritance in Arabidopsis
Blevins, Todd, Pontvianne, Frédéric, Cocklin, Ross, Podicheti, Ram, Chandrasekhara, Chinmayi, Yerneni, Satwica, Braun, Chris, Lee, Brandon, Rusch, Doug, Mockaitis, Keithanne, Tang, Haixu, Pikaard, Craig S.
Published in Molecular cell (10.04.2014)
Published in Molecular cell (10.04.2014)
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Journal Article
Mutation of Arabidopsis SMC4 identifies condensin as a corepressor of pericentromeric transposons and conditionally expressed genes
Wang, Jing, Blevins, Todd, Podicheti, Ram, Haag, Jeremy R, Tan, Ek Han, Wang, Feng, Pikaard, Craig S
Published in Genes & development (01.08.2017)
Published in Genes & development (01.08.2017)
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Journal Article
An Ergatis-based prokaryotic genome annotation web server
Hemmerich, Chris, Buechlein, Aaron, Podicheti, Ram, Revanna, Kashi V., Dong, Qunfeng
Published in Bioinformatics (15.04.2010)
Published in Bioinformatics (15.04.2010)
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Journal Article
Nitric oxide stimulates type IV MSHA pilus retraction in Vibrio cholerae via activation of the phosphodiesterase CdpA
Hughes, Hannah Q, Floyd, Kyle A, Hossain, Sajjad, Anantharaman, Sweta, Kysela, David T, Zöldi, Miklόs, Barna, Lászlό, Yu, Yuanchen, Kappler, Michael P, Dalia, Triana N, Podicheti, Ram C, Rusch, Douglas B, Zhuang, Meng, Fraser, Cassandra L, Brun, Yves V, Jacobson, Stephen C, McKinlay, James B, Yildiz, Fitnat H, Boon, Elizabeth M, Dalia, Ankur B
Published in Proceedings of the National Academy of Sciences - PNAS (15.02.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (15.02.2022)
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Journal Article
Transcriptome-wide analysis of pseudouridylation in Drosophila melanogaster
Song, Wan, Podicheti, Ram, Rusch, Douglas B, Tracey, William Daniel
Published in G3 : genes - genomes - genetics (09.03.2023)
Published in G3 : genes - genomes - genetics (09.03.2023)
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Journal Article
Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp
Kilaru, Aruna, Cao, Xia, Dabbs, Parker B, Sung, Ha-Jung, Rahman, Md Mahbubur, Thrower, Nicholas, Zynda, Greg, Podicheti, Ram, Ibarra-Laclette, Enrique, Herrera-Estrella, Luis, Mockaitis, Keithanne, Ohlrogge, John B
Published in BMC plant biology (16.08.2015)
Published in BMC plant biology (16.08.2015)
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Journal Article
Mismatch Repair Proteins Initiate Epigenetic Alterations during Inflammation-Driven Tumorigenesis
Maiuri, Ashley R, Peng, Michael, Sriramkumar, Shruthi, Kamplain, Caitlin M, DeStefano Shields, Christina E, Sears, Cynthia L, O'Hagan, Heather M
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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Journal Article
Evolutionary relationship of disease resistance genes in soybean and Arabidopsis specific for the Pseudomonas syringae effectors AvrB and AvrRpm1
Ashfield, Tom, Redditt, Thomas, Russell, Andrew, Kessens, Ryan, Rodibaugh, Natalie, Galloway, Lauren, Kang, Qing, Podicheti, Ram, Innes, Roger W
Published in Plant physiology (Bethesda) (01.09.2014)
Published in Plant physiology (Bethesda) (01.09.2014)
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Journal Article
Composition and Functional Potential of the Human Mammary Microbiota Prior to and Following Breast Tumor Diagnosis
Hoskinson, Courtney, Zheng, Kelly, Gabel, Jaelyn, Kump, Annie, German, Rana, Podicheti, Ram, Marino, Natascia, Stiemsma, Leah T
Published in mSystems (28.06.2022)
Published in mSystems (28.06.2022)
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Journal Article
DNA methyltransferase inhibition reduces inflammation-induced colon tumorigenesis
Maiuri, Ashley R., Savant, Sudha S., Podicheti, Ram, Rusch, Douglas B., O'Hagan, Heather M.
Published in Epigenetics (02.12.2019)
Published in Epigenetics (02.12.2019)
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Journal Article
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color
Motamayor, Juan C, Mockaitis, Keithanne, Schmutz, Jeremy, Haiminen, Niina, Livingstone, 3rd, Donald, Cornejo, Omar, Findley, Seth D, Zheng, Ping, Utro, Filippo, Royaert, Stefan, Saski, Christopher, Jenkins, Jerry, Podicheti, Ram, Zhao, Meixia, Scheffler, Brian E, Stack, Joseph C, Feltus, Frank A, Mustiga, Guiliana M, Amores, Freddy, Phillips, Wilbert, Marelli, Jean Philippe, May, Gregory D, Shapiro, Howard, Ma, Jianxin, Bustamante, Carlos D, Schnell, Raymond J, Main, Dorrie, Gilbert, Don, Parida, Laxmi, Kuhn, David N
Published in Genome biology (07.10.2013)
Published in Genome biology (07.10.2013)
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Journal Article
Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors
Orsini, Luisa, Gilbert, Donald, Podicheti, Ram, Jansen, Mieke, Brown, James B., Solari, Omid Shams, Spanier, Katina I., Colbourne, John K., Rusch, Douglas B., Decaestecker, Ellen, Asselman, Jana, De Schamphelaere, Karel A.C., Ebert, Dieter, Haag, Christoph R., Kvist, Jouni, Laforsch, Christian, Petrusek, Adam, Beckerman, Andrew P., Little, Tom J., Chaturvedi, Anurag, Pfrender, Michael E., De Meester, Luc, Frilander, Mikko J.
Published in Scientific data (10.05.2016)
Published in Scientific data (10.05.2016)
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Journal Article
The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis
Hématy, Kian, Bellec, Yannick, Podicheti, Ram, Bouteiller, Nathalie, Anne, Pauline, Morineau, Céline, Haslam, Richard P, Beaudoin, Frederic, Napier, Johnathan A, Mockaitis, Keithanne, Gagliardi, Dominique, Vaucheret, Hervé, Lange, Heike, Faure, Jean-Denis
Published in PLoS genetics (01.02.2016)
Published in PLoS genetics (01.02.2016)
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Journal Article
The ChiS-Family DNA-Binding Domain Contains a Cryptic Helix-Turn-Helix Variant
Klancher, Catherine A, Minasov, George, Podicheti, Ram, Rusch, Douglas B, Dalia, Triana N, Satchell, Karla J F, Neiditch, Matthew B, Dalia, Ankur B
Published in mBio (16.03.2021)
Published in mBio (16.03.2021)
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Journal Article
FAM83A is a potential biomarker for breast cancer initiation
Marino, Natascia, German, Rana, Podicheti, Ram, Rockey, Pam, Sandusky, George E, Temm, Constance J, Nakshatri, Harikrishna, Addison, Rebekah J, Selman, Bryce, Althouse, Sandra K, Storniolo, Anna Maria V
Published in Biomarker research (19.02.2022)
Published in Biomarker research (19.02.2022)
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Journal Article
De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): genomic tools for an ecological model system
Peterson, Mark P, Whittaker, Danielle J, Ambreth, Shruthi, Sureshchandra, Suhas, Buechlein, Aaron, Podicheti, Ram, Choi, Jeong-Hyeon, Lai, Zhao, Mockatis, Keithanne, Colbourne, John, Tang, Haixu, Ketterson, Ellen D
Published in BMC genomics (09.07.2012)
Published in BMC genomics (09.07.2012)
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Journal Article