MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data
Plaza Oñate, Florian, Le Chatelier, Emmanuelle, Almeida, Mathieu, Cervino, Alessandra C L, Gauthier, Franck, Magoulès, Frédéric, Ehrlich, S Dusko, Pichaud, Matthieu
Published in Bioinformatics (Oxford, England) (01.05.2019)
Published in Bioinformatics (Oxford, England) (01.05.2019)
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A Natural Polyphenol Exerts Antitumor Activity and Circumvents Anti-PD-1 Resistance through Effects on the Gut Microbiota
Messaoudene, Meriem, Pidgeon, Reilly, Richard, Corentin, Ponce, Mayra, Diop, Khoudia, Benlaifaoui, Myriam, Nolin-Lapalme, Alexis, Cauchois, Florent, Malo, Julie, Belkaid, Wiam, Isnard, Stephane, Fradet, Yves, Dridi, Lharbi, Velin, Dominique, Oster, Paul, Raoult, Didier, Ghiringhelli, François, Boidot, Romain, Chevrier, Sandy, Kysela, David T, Brun, Yves V, Falcone, Emilia Liana, Pilon, Geneviève, Oñate, Florian Plaza, Gitton-Quent, Oscar, Le Chatelier, Emmanuelle, Durand, Sylvere, Kroemer, Guido, Elkrief, Arielle, Marette, André, Castagner, Bastien, Routy, Bertrand
Published in Cancer discovery (01.04.2022)
Published in Cancer discovery (01.04.2022)
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Both Disease Activity and HLA–B27 Status Are Associated With Gut Microbiome Dysbiosis in Spondyloarthritis Patients
Berland, Magali, Meslier, Victoria, Berreira Ibraim, Samar, Le Chatelier, Emmanuelle, Pons, Nicolas, Maziers, Nicolas, Thirion, Florence, Gauthier, Franck, Plaza Oñate, Florian, Furet, Jean‐Pierre, Leboime, Ariane, Said‐Nahal, Roula, Levenez, Florence, Galleron, Nathalie, Quinquis, Benoît, Langella, Philippe, Ehrlich, Stanislav Dusko, Breban, Maxime
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.01.2023)
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.01.2023)
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High engraftment capacity of frozen ready-to-use human fecal microbiota transplants assessed in germ-free mice
Berland, Magali, Cadiou, Julie, Levenez, Florence, Galleron, Nathalie, Quinquis, Benoît, Thirion, Florence, Gauthier, Franck, Le Chatelier, Emmanuelle, Plaza Oñate, Florian, Schwintner, Carole, Rabot, Sylvie, Lepage, Patricia, Ehrlich, Dusko, Doré, Joël, Juste, Catherine
Published in Scientific reports (23.02.2021)
Published in Scientific reports (23.02.2021)
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Adlercreutzia equolifaciens Is an Anti-Inflammatory Commensal Bacterium with Decreased Abundance in Gut Microbiota of Patients with Metabolic Liver Disease
Oñate, Florian Plaza, Chamignon, Célia, Burz, Sebastian D, Lapaque, Nicolas, Monnoye, Magali, Philippe, Catherine, Bredel, Maxime, Chêne, Laurent, Farin, William, Paillarse, Jean-Michel, Boursier, Jérome, Ratziu, Vlad, Mousset, Pierre-Yves, Doré, Joël, Gérard, Philippe, Blottière, Hervé M
Published in International journal of molecular sciences (01.08.2023)
Published in International journal of molecular sciences (01.08.2023)
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Driving gut microbiota enterotypes through host genetics
Larzul, Catherine, Estellé, Jordi, Borey, Marion, Blanc, Fany, Lemonnier, Gaëtan, Billon, Yvon, Thiam, Mamadou Gabou, Quinquis, Benoît, Galleron, Nathalie, Jardet, Deborah, Lecardonnel, Jérôme, Plaza Oñate, Florian, Rogel-Gaillard, Claire
Published in Microbiome (28.06.2024)
Published in Microbiome (28.06.2024)
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Diet Supplementation with NUTRIOSE, a Resistant Dextrin, Increases the Abundance of Parabacteroides distasonis in the Human Gut
Thirion, Florence, Da Silva, Kévin, Plaza Oñate, Florian, Alvarez, Anne‐Sophie, Thabuis, Clémentine, Pons, Nicolas, Berland, Magali, Le Chatelier, Emmanuelle, Galleron, Nathalie, Levenez, Florence, Vergara, Coralie, Chevallier, Hélène, Guérin‐Deremaux, Laetitia, Doré, Joël, Ehrlich, Stanislav D.
Published in Molecular nutrition & food research (01.06.2022)
Published in Molecular nutrition & food research (01.06.2022)
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Major depletion of insulin sensitivity-associated taxa in the gut microbiome of persons living with HIV controlled by antiretroviral drugs
Belda, Eugeni, Capeau, Jacqueline, Zucker, Jean-Daniel, Chatelier, Emmanuelle Le, Pons, Nicolas, Oñate, Florian Plaza, Quinquis, Benoit, Alili, Rohia, Fellahi, Soraya, Katlama, Christine, Clément, Karine, Fève, Bruno, Jaureguiberry, Stéphane, Goujard, Cécile, Lambotte, Olivier, Doré, Joël, Prifti, Edi, Bastard, Jean-Philippe
Published in BMC medical genomics (13.08.2024)
Published in BMC medical genomics (13.08.2024)
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Changes in Gut Microbiota of Patients with Atopic Dermatitis During Balneotherapy
Thirion, Florence, Guilly, Susie, Fromentin, Sébastien, Plaza Oñate, Florian, Alvarez, Anne-Sophie, Le Chatelier, Emmanuelle, Pons, Nicolas, Levenez, Florence, Quinquis, Benoît, Ehrlich, Stanislav, Doré, Joel, Martin, Richard, Seité, Sophie
Published in Clinical, cosmetic and investigational dermatology (01.01.2022)
Published in Clinical, cosmetic and investigational dermatology (01.01.2022)
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Draft Genome Sequence of Isolate POC01, a Novel Anaerobic Member of the Oscillospiraceae Family, Isolated from Human Feces
Meslier, Victoria, Plaza Oñate, Florian, Ania, Maryne, Nehlich, Mélanie, Belotserkovsky, Ilia, Bellais, Samuel, Thomas, Vincent
Published in Microbiology resource announcements (20.01.2022)
Published in Microbiology resource announcements (20.01.2022)
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In Vitro Modelling of Oral Microbial Invasion in the Human Colon
Etienne-Mesmin, Lucie, Meslier, Victoria, Uriot, Ophélie, Fournier, Elora, Deschamps, Charlotte, Denis, Sylvain, David, Aymeric, Jegou, Sarah, Morabito, Christian, Quinquis, Benoit, Thirion, Florence, Plaza Oñate, Florian, Le Chatelier, Emmanuelle, Ehrlich, S Dusko, Blanquet-Diot, Stéphanie, Almeida, Mathieu
Published in Microbiology spectrum (27.03.2023)
Published in Microbiology spectrum (27.03.2023)
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Alteration of Gut Microbiome in Patients With Schizophrenia Indicates Links Between Bacterial Tyrosine Biosynthesis and Cognitive Dysfunction
Thirion, Florence, Speyer, Helene, Hansen, Tue Haldor, Nielsen, Trine, Fan, Yong, Le Chatelier, Emmanuelle, Fromentin, Sébastien, Berland, Magali, Plaza Oñate, Florian, Pons, Nicolas, Galleron, Nathalie, Levenez, Florence, Markó, Lajos, Birkner, Till, Jørgensen, Torben, Forslund, Sofia K., Vestergaard, Henrik, Hansen, Torben, Nordentoft, Merete, Mors, Ole, Benros, Michael E., Pedersen, Oluf, Ehrlich, Stanislav D.
Published in Biological psychiatry global open science (01.04.2023)
Published in Biological psychiatry global open science (01.04.2023)
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Transient colonizing microbes promote gut dysbiosis and functional impairment
Lee, Sunjae, Meslier, Victoria, Bidkhori, Gholamreza, Garcia-Guevara, Fernando, Etienne-Mesmin, Lucie, Clasen, Frederick, Park, Junseok, Plaza Oñate, Florian, Cai, Haizhuang, Le Chatelier, Emmanuelle, Pons, Nicolas, Pereira, Marcela, Seifert, Maike, Boulund, Fredrik, Engstrand, Lars, Lee, Doheon, Proctor, Gordon, Mardinoglu, Adil, Blanquet-Diot, Stéphanie, Moyes, David, Almeida, Mathieu, Ehrlich, S. Dusko, Uhlen, Mathias, Shoaie, Saeed
Published in NPJ biofilms and microbiomes (08.09.2024)
Published in NPJ biofilms and microbiomes (08.09.2024)
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The effects of Aronia berry (poly)phenol supplementation on arterial function and the gut microbiome in middle aged men and women: Results from a randomized controlled trial
Le Sayec, Melanie, Xu, Yifan, Laiola, Manolo, Gallego, Fabiola Alvarez, Katsikioti, Daphne, Durbidge, Chandler, Kivisild, Uku, Armes, Sarah, Lecomte, Manon, Fança-Berthon, Pascale, Fromentin, Emilie, Plaza Oñate, Florian, Cruickshank, J Kennedy, Rodriguez-Mateos, Ana
Published in Clinical nutrition (Edinburgh, Scotland) (01.11.2022)
Published in Clinical nutrition (Edinburgh, Scotland) (01.11.2022)
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Impact of laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy on gut microbiota: a metagenomic comparative analysis
Farin, William, Oñate, Florian Plaza, Plassais, Jonathan, Bonny, Christophe, Beglinger, Christoph, Woelnerhanssen, Bettina, Nocca, David, Magoules, Frederic, Le Chatelier, Emmanuelle, Pons, Nicolas, Cervino, Alessandra C.L., Ehrlich, S. Dusko
Published in Surgery for obesity and related diseases (01.07.2020)
Published in Surgery for obesity and related diseases (01.07.2020)
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Journal Article
High engraftment capacity of frozen ready-to-use human fecal microbiota transplants assessed in germ-free mice
Berland, Magali, Cadiou, Julie, Levenez, Florence, Galleron, Nathalie, Quinquis, Benoît, Thirion, Florence, Gauthier, Franck, Le Chatelier, Emmanuelle, Plaza Oñate, Florian, Schwintner, Carole, Rabot, Sylvie, Lepage, Patricia, Ehrlich, Dusko, Doré, Joël, Juste, Catherine
Published in Scientific reports (01.12.2021)
Published in Scientific reports (01.12.2021)
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