Batch effects removal for microbiome data via conditional quantile regression
Ling, Wodan, Lu, Jiuyao, Zhao, Ni, Lulla, Anju, Plantinga, Anna M., Fu, Weijia, Zhang, Angela, Liu, Hongjiao, Song, Hoseung, Li, Zhigang, Chen, Jun, Randolph, Timothy W., Koay, Wei Li A., White, James R., Launer, Lenore J., Fodor, Anthony A., Meyer, Katie A., Wu, Michael C.
Published in Nature communications (15.09.2022)
Published in Nature communications (15.09.2022)
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Journal Article
Accommodating multiple potential normalizations in microbiome associations studies
Song, Hoseung, Ling, Wodan, Zhao, Ni, Plantinga, Anna M, Broedlow, Courtney A, Klatt, Nichole R, Hensley-McBain, Tiffany, Wu, Michael C
Published in BMC bioinformatics (19.01.2023)
Published in BMC bioinformatics (19.01.2023)
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Journal Article
Kernel-based genetic association analysis for microbiome phenotypes identifies host genetic drivers of beta-diversity
Liu, Hongjiao, Ling, Wodan, Hua, Xing, Moon, Jee-Young, Williams-Nguyen, Jessica S, Zhan, Xiang, Plantinga, Anna M, Zhao, Ni, Zhang, Angela, Knight, Rob, Qi, Qibin, Burk, Robert D, Kaplan, Robert C, Wu, Michael C
Published in Microbiome (20.04.2023)
Published in Microbiome (20.04.2023)
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Journal Article
Biomarker profiling of steroid-resistant acute GVHD in patients after infusion of mesenchymal stromal cells
te Boome, L C J, Mansilla, C, van der Wagen, L E, Lindemans, C A, Petersen, E J, Spierings, E, Thus, K A, Westinga, K, Plantinga, M, Bierings, M, Broers, A E C, Cuijpers, M L H, van Imhoff, G W, Janssen, J J, Huisman, C, Zeerleder, S, Huls, G, Boelens, J J, Wulffraat, N M, Slaper-Cortenbach, I C M, Kuball, J
Published in Leukemia (01.09.2015)
Published in Leukemia (01.09.2015)
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Journal Article
Staphylococcus aureus enterotoxin B facilitates allergic sensitization in experimental asthma
Huvenne, W., Callebaut, I., Plantinga, M., Vanoirbeek, J. A. J., Krysko, O., Bullens, D. M. A., Gevaert, P., Van Cauwenberge, P., Lambrecht, B. N., Ceuppens, J. L., Bachert, C., Hellings, P. W.
Published in Clinical and experimental allergy (01.07.2010)
Published in Clinical and experimental allergy (01.07.2010)
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Journal Article
Directed antigen targeting in vivo identifies a role for CD103+ dendritic cells in both tolerogenic and immunogenic T-cell responses
Semmrich, M, Plantinga, M, Svensson-Frej, M, Uronen-Hansson, H, Gustafsson, T, Mowat, A M, Yrlid, U, Lambrecht, B N, Agace, W W
Published in Mucosal immunology (01.03.2012)
Published in Mucosal immunology (01.03.2012)
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Journal Article
Cognate CD4 T-cell licensing of dendritic cells heralds anti-cytomegalovirus CD8 T-cell immunity after human allogeneic umbilical cord blood transplantation
Flinsenberg, T W H, Spel, L, Jansen, M, Koning, D, de Haar, C, Plantinga, M, Scholman, R, van Loenen, M M, Nierkens, S, Boon, L, van Baarle, D, Heemskerk, M H M, Boelens, J J, Boes, M
Published in Journal of virology (15.01.2015)
Published in Journal of virology (15.01.2015)
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Journal Article
Customized cord blood-derived dendritic cells to get better disease control in refractory AML
Plantinga, M, de Haar, C, Dunnebach, E, Boelens, J, Nierkens, S
Published in Cytotherapy (Oxford, England) (01.05.2017)
Published in Cytotherapy (Oxford, England) (01.05.2017)
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Journal Article
The adjuvant‐like activity of staphylococcal enterotoxin B in a murine asthma model is independent of IL‐1R signaling
Krysko, O., Maes, T., Plantinga, M., Holtappels, G., Imiru, R., Vandenabeele, P., Joos, G., Krysko, D. V., Bachert, C.
Published in Allergy (Copenhagen) (01.04.2013)
Published in Allergy (Copenhagen) (01.04.2013)
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Journal Article
pldist: ecological dissimilarities for paired and longitudinal microbiome association analysis
Plantinga, Anna M, Chen, Jun, Jenq, Robert R, Wu, Michael C
Published in Bioinformatics (01.10.2019)
Published in Bioinformatics (01.10.2019)
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Journal Article
Comparing Insulin Against Glucagon-Like Peptide-1 Receptor Agonists, Dipeptidyl Peptidase-4 Inhibitors, and Sodium-Glucose Cotransporter 2 Inhibitors on 5-Year Incident Heart Failure Risk for Patients With Type 2 Diabetes Mellitus: Real-World Evidence Study Using Insurance Claims
Wang, Xuan, Plantinga, Anna M, Xiong, Xin, Cromer, Sara J, Bonzel, Clara-Lea, Panickan, Vidul, Duan, Rui, Hou, Jue, Cai, Tianxi
Published in JMIR diabetes (22.10.2024)
Published in JMIR diabetes (22.10.2024)
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Journal Article
Testing microbiome association using integrated quantile regression models
Wang, Tianying, Ling, Wodan, Plantinga, Anna M, Wu, Michael C, Zhan, Xiang
Published in Bioinformatics (03.01.2022)
Published in Bioinformatics (03.01.2022)
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Journal Article
MiRKAT: kernel machine regression-based global association tests for the microbiome
Wilson, Nehemiah, Zhao, Ni, Zhan, Xiang, Koh, Hyunwook, Fu, Weijia, Chen, Jun, Li, Hongzhe, Wu, Michael C, Plantinga, Anna M
Published in Bioinformatics (Oxford, England) (12.07.2021)
Published in Bioinformatics (Oxford, England) (12.07.2021)
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Journal Article
S624 The Gut Microbiome and Symptoms in Irritable Bowel Syndrome
Kamp, Kendra, Plantinga, Anna M., Cain, Kevin C., Burr, Robert, Wu, Qinglong, So, Sik Yu, Badu, Shyam, Savidge, Tor, Shulman, Robert, Heitkemper, Margaret E.
Published in The American journal of gastroenterology (01.10.2023)
Published in The American journal of gastroenterology (01.10.2023)
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Journal Article
Exploration of associations among dietary tryptophan, microbiome composition and function, and symptom severity in irritable bowel syndrome
Plantinga, Anna M., Kamp, Kendra J., Wu, Qinglong, Chen, Li, Yoo, Linda, Burr, Robert L., Cain, Kevin C., Raftery, Daniel, Carnevale Neto, Fausto, Badu, Shyam, So, Sik Yu, Savidge, Tor, Shulman, Robert J., Heitkemper, Margaret M.
Published in Neurogastroenterology and motility (01.05.2023)
Published in Neurogastroenterology and motility (01.05.2023)
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Journal Article
RNA recognition and base flipping by the toxin sarcin
Correll, C. C., Yang, X., Gerczei, T., Beneken, J., Plantinga, M. J.
Published in Journal of synchrotron radiation (01.01.2004)
Published in Journal of synchrotron radiation (01.01.2004)
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Journal Article
Conference Proceeding
A Comprehensive Self-Management Program With Diet Education Does Not Alter Microbiome Characteristics in Women With Irritable Bowel Syndrome
Kamp, Kendra J, Plantinga, Anna M, Cain, Kevin C, Burr, Robert L, Barney, Pamela, Jarrett, Monica, Luna, Ruth Ann, Savidge, Tor, Shulman, Robert, Heitkemper, Margaret M
Published in Biological research for nursing (01.07.2021)
Published in Biological research for nursing (01.07.2021)
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Journal Article
P10-08 Microplastics and the immune system: an in vitro analysis of the effect of virgin and weathered micro- and nanoplastics on dendritic cell activation
van den Berg, A.E.T., Smit, J.J., Plantinga, M., Vethaak, A.D., Adriaans, K., Legler, J., Pieters, R.H.H.
Published in Toxicology letters (01.09.2022)
Published in Toxicology letters (01.09.2022)
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