A network-based approach to integrate nutrient microenvironment in the prediction of synthetic lethality in cancer metabolism
Apaolaza, Iñigo, San José-Enériz, Edurne, Valcarcel, Luis V, Agirre, Xabier, Prosper, Felipe, Planes, Francisco J
Published in PLoS computational biology (01.03.2022)
Published in PLoS computational biology (01.03.2022)
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BOSO: A novel feature selection algorithm for linear regression with high-dimensional data
Valcárcel, Luis V, San José-Enériz, Edurne, Cendoya, Xabier, Rubio, Ángel, Agirre, Xabier, Prósper, Felipe, Planes, Francisco J
Published in PLoS computational biology (31.05.2022)
Published in PLoS computational biology (31.05.2022)
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An in-silico approach to predict and exploit synthetic lethality in cancer metabolism
Apaolaza, Iñigo, San José-Eneriz, Edurne, Tobalina, Luis, Miranda, Estíbaliz, Garate, Leire, Agirre, Xabier, Prósper, Felipe, Planes, Francisco J
Published in Nature communications (06.09.2017)
Published in Nature communications (06.09.2017)
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gMCS: fast computation of genetic minimal cut sets in large networks
Apaolaza, Iñigo, Valcarcel, Luis Vitores, Planes, Francisco J
Published in Bioinformatics (01.02.2019)
Published in Bioinformatics (01.02.2019)
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An extended reconstruction of human gut microbiota metabolism of dietary compounds
Blasco, Telmo, Pérez-Burillo, Sergio, Balzerani, Francesco, Hinojosa-Nogueira, Daniel, Lerma-Aguilera, Alberto, Pastoriza, Silvia, Cendoya, Xabier, Rubio, Ángel, Gosalbes, María José, Jiménez-Hernández, Nuria, Pilar Francino, M, Apaolaza, Iñigo, Rufián-Henares, José Ángel, Planes, Francisco J
Published in Nature communications (05.08.2021)
Published in Nature communications (05.08.2021)
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Computing the shortest elementary flux modes in genome-scale metabolic networks
de Figueiredo, Luis F., Podhorski, Adam, Rubio, Angel, Kaleta, Christoph, Beasley, John E., Schuster, Stefan, Planes, Francisco J.
Published in Bioinformatics (01.12.2009)
Published in Bioinformatics (01.12.2009)
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Journal Article
Joint analysis of miRNA and mRNA expression data
Muniategui, Ander, Pey, Jon, Planes, Francisco J, Rubio, Angel
Published in Briefings in bioinformatics (01.05.2013)
Published in Briefings in bioinformatics (01.05.2013)
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Journal Article
New Inference Rules for Max-SAT
Li, C. M., Manya, F., Planes, J.
Published in The Journal of artificial intelligence research (01.01.2007)
Published in The Journal of artificial intelligence research (01.01.2007)
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Extending PROXIMAL to predict degradation pathways of phenolic compounds in the human gut microbiota
Balzerani, Francesco, Blasco, Telmo, Pérez-Burillo, Sergio, Valcarcel, Luis V, Hassoun, Soha, Planes, Francisco J
Published in NPJ systems biology and applications (27.05.2024)
Published in NPJ systems biology and applications (27.05.2024)
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Adaptation of the Human Gut Microbiota Metabolic Network During the First Year After Birth
Fuertes, Alvaro, Pérez-Burillo, Sergio, Apaolaza, Iñigo, Vallès, Yvonne, Francino, M Pilar, Rufián-Henares, José Ángel, Planes, Francisco J
Published in Frontiers in microbiology (24.04.2019)
Published in Frontiers in microbiology (24.04.2019)
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Path finding methods accounting for stoichiometry in metabolic networks
Pey, Jon, Prada, Joaquín, Beasley, John E, Planes, Francisco J
Published in Genome biology (27.05.2011)
Published in Genome biology (27.05.2011)
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Effect of Freezing on Gut Microbiota Composition and Functionality for In Vitro Fermentation Experiments
Pérez-Burillo, Sergio, Hinojosa-Nogueira, Daniel, Navajas-Porras, Beatriz, Blasco, Telmo, Balzerani, Francesco, Lerma-Aguilera, Alberto, León, Daniel, Pastoriza, Silvia, Apaolaza, Iñigo, Planes, Francisco J., Francino, Maria Pilar, Rufián-Henares, José Ángel
Published in Nutrients (27.06.2021)
Published in Nutrients (27.06.2021)
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Prediction of degradation pathways of phenolic compounds in the human gut microbiota through enzyme promiscuity methods
Balzerani, Francesco, Hinojosa-Nogueira, Daniel, Cendoya, Xabier, Blasco, Telmo, Pérez-Burillo, Sergio, Apaolaza, Iñigo, Francino, M. Pilar, Rufián-Henares, José Ángel, Planes, Francisco J.
Published in NPJ systems biology and applications (12.07.2022)
Published in NPJ systems biology and applications (12.07.2022)
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DrugSniper, a Tool to Exploit Loss-Of-Function Screens, Identifies CREBBP as a Predictive Biomarker of VOLASERTIB in Small Cell Lung Carcinoma (SCLC)
Carazo, Fernando, Bértolo, Cristina, Castilla, Carlos, Cendoya, Xabier, Campuzano, Lucía, Serrano, Diego, Gimeno, Marian, Planes, Francisco J., Pio, Ruben, Montuenga, Luis M., Rubio, Angel
Published in Cancers (07.07.2020)
Published in Cancers (07.07.2020)
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Exploring metabolic pathways in genome-scale networks via generating flux modes
REZOLA, A, DE FIGUEIREDO, L. F, BROCK, M, PEY, J, PODHORSKI, A, WITTMANN, C, SCHUSTER, S, BOCKMAYR, A, PLANES, F. J
Published in Bioinformatics (Oxford, England) (15.02.2011)
Published in Bioinformatics (Oxford, England) (15.02.2011)
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