Proteome Mapping of the Human Pancreatic Islet Microenvironment Reveals Endocrine–Exocrine Signaling Sphere of Influence
Gosline, Sara J.C., Velickovic, Marija, Pino, James, Day, Le Z., Attah, Isaac K., Swensen, Adam C., Danna, Vincent, Posso, Camilo, Rodland, Karin D., Chen, Jing, Matthews, Clayton E., Campbell-Thompson, Martha, Laskin, Julia, Burnum-Johnson, Kristin, Zhu, Ying, Piehowski, Paul D.
Published in Molecular & cellular proteomics (01.08.2023)
Published in Molecular & cellular proteomics (01.08.2023)
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Journal Article
Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective
Chifman, Julia, Arat, Seda, Deng, Zhiyong, Lemler, Erica, Pino, James C, Harris, Leonard A, Kochen, Michael A, Lopez, Carlos F, Akman, Steven A, Torti, Frank M, Torti, Suzy V, Laubenbacher, Reinhard
Published in PLoS computational biology (01.02.2017)
Published in PLoS computational biology (01.02.2017)
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Journal Article
Coupling Microdroplet-Based Sample Preparation, Multiplexed Isobaric Labeling, and Nanoflow Peptide Fractionation for Deep Proteome Profiling of the Tissue Microenvironment
Veličković, Marija, Fillmore, Thomas L., Attah, Isaac Kwame, Posso, Camilo, Pino, James C., Zhao, Rui, Williams, Sarah M., Veličković, Dušan, Jacobs, Jon M., Burnum-Johnson, Kristin E., Zhu, Ying, Piehowski, Paul D.
Published in Analytical chemistry (Washington) (13.08.2024)
Published in Analytical chemistry (Washington) (13.08.2024)
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Journal Article
CASP11--An Evaluation of a Modular BCL::Fold-Based Protein Structure Prediction Pipeline
Fischer, Axel W, Heinze, Sten, Putnam, Daniel K, Li, Bian, Pino, James C, Xia, Yan, Lopez, Carlos F, Meiler, Jens
Published in PloS one (05.04.2016)
Published in PloS one (05.04.2016)
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Journal Article
GPU-powered model analysis with PySB/cupSODA
Harris, Leonard A, Nobile, Marco S, Pino, James C, Lubbock, Alexander L R, Besozzi, Daniela, Mauri, Giancarlo, Cazzaniga, Paolo, Lopez, Carlos F
Published in Bioinformatics (Oxford, England) (01.11.2017)
Published in Bioinformatics (Oxford, England) (01.11.2017)
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Journal Article
Ex vivo to in vivo model of malignant peripheral nerve sheath tumors for precision oncology
Larsson, Alex T, Bhatia, Himanshi, Calizo, Ana, Pollard, Kai, Zhang, Xiaochun, Conniff, Eric, Tibbitts, Justin F, Rono, Elizabeth, Cummins, Katherine, Osum, Sara H, Williams, Kyle B, Crampton, Alexandra L, Jubenville, Tyler, Schefer, Daniel, Yang, Kuangying, Lyu, Yang, Pino, James C, Bade, Jessica, Gross, John M, Lisok, Alla, Dehner, Carina A, Chrisinger, John S A, He, Kevin, Gosline, Sara J C, Pratilas, Christine A, Largaespada, David A, Wood, David K, Hirbe, Angela C
Published in Neuro-oncology (Charlottesville, Va.) (02.11.2023)
Published in Neuro-oncology (Charlottesville, Va.) (02.11.2023)
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Journal Article
Signal execution modes emerge in biochemical reaction networks calibrated to experimental data
Ortega, Oscar O., Ozen, Mustafa, Wilson, Blake A., Pino, James C., Irvin, Michael W., Ildefonso, Geena V., Garbett, Shawn P., Lopez, Carlos F.
Published in iScience (21.06.2024)
Published in iScience (21.06.2024)
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Journal Article
Integrated, High-Throughput, Multiomics Platform Enables Data-Driven Construction of Cellular Responses and Reveals Global Drug Mechanisms of Action
Norris, Jeremy L, Farrow, Melissa A, Gutierrez, Danielle B, Palmer, Lauren D, Muszynski, Nicole, Sherrod, Stacy D, Pino, James C, Allen, Jamie L, Spraggins, Jeffrey M, Lubbock, Alex L. R, Jordan, Ashley, Burns, William, Poland, James C, Romer, Carrie, Manier, M. Lisa, Nei, Yuan-wei, Prentice, Boone M, Rose, Kristie L, Hill, Salisha, Van de Plas, Raf, Tsui, Tina, Braman, Nathaniel M, Keller, M. Ray, Rutherford, Stacey A, Lobdell, Nichole, Lopez, Carlos F, Lacy, D. Borden, McLean, John A, Wikswo, John P, Skaar, Eric P, Caprioli, Richard M
Published in Journal of proteome research (03.03.2017)
Published in Journal of proteome research (03.03.2017)
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Journal Article
Proteomic and phosphoproteomic measurements enhance ability to predict ex vivo drug response in AML
Gosline, Sara J C, Tognon, Cristina, Nestor, Michael, Joshi, Sunil, Modak, Rucha, Damnernsawad, Alisa, Posso, Camilo, Moon, Jamie, Hansen, Joshua R, Hutchinson-Bunch, Chelsea, Pino, James C, Gritsenko, Marina A, Weitz, Karl K, Traer, Elie, Tyner, Jeffrey, Druker, Brian, Agarwal, Anupriya, Piehowski, Paul, McDermott, Jason E, Rodland, Karin
Published in Clinical proteomics (27.07.2022)
Published in Clinical proteomics (27.07.2022)
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Journal Article
Processes in DNA damage response from a whole-cell multi-omics perspective
Pino, James C., Lubbock, Alexander L.R., Harris, Leonard A., Gutierrez, Danielle B., Farrow, Melissa A., Muszynski, Nicole, Tsui, Tina, Sherrod, Stacy D., Norris, Jeremy L., McLean, John A., Caprioli, Richard M., Wikswo, John P., Lopez, Carlos F.
Published in iScience (18.11.2022)
Published in iScience (18.11.2022)
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Journal Article
CDK4/6 inhibition enhances SHP2 inhibitor efficacy and is dependent upon RB function in malignant peripheral nerve sheath tumors
Wang, Jiawan, Calizo, Ana, Zhang, Lindy, Pino, James C, Lyu, Yang, Pollard, Kai, Zhang, Xiaochun, Larsson, Alex T, Conniff, Eric, Llosa, Nicolas J, Wood, David K, Largaespada, David A, Moody, Susan E, Gosline, Sara J, Hirbe, Angela C, Pratilas, Christine A
Published in Science advances (24.11.2023)
Published in Science advances (24.11.2023)
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Journal Article
Selective Inhibition of JAK1 Primes STAT5-Driven Human Leukemia Cells for ATRA-Induced Differentiation
Ramsey, Haley E., Stengel, Kristy, Pino, James C., Johnston, Gretchen, Childress, Merrida, Gorska, Agnieszka E., Arrate, Pia M., Fuller, Londa, Villaume, Matthew, Fischer, Melissa A., Ferrell, P. Brent, Roe, Caroline E., Zou, Jing, Lubbock, Alexander L. R., Stubbs, Matthew, Zinkel, Sandra, Irish, Jonathan M., Lopez, Carlos F., Hiebert, Scott, Savona, Michael R.
Published in Targeted oncology (01.09.2021)
Published in Targeted oncology (01.09.2021)
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Journal Article
Folding propensity of intrinsically disordered proteins by osmotic stress
Mansouri, Amanda L, Grese, Laura N, Rowe, Erica L, Pino, James C, Chennubhotla, S Chakra, Ramanathan, Arvind, O'Neill, Hugh M, Berthelier, Valerie, Stanley, Christopher B
Published in Molecular bioSystems (15.11.2016)
Published in Molecular bioSystems (15.11.2016)
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Journal Article
Mapping the proteogenomic landscape enables prediction of drug response in acute myeloid leukemia
Pino, James C, Posso, Camilo, Joshi, Sunil K, Nestor, Michael, Moon, Jamie, Hansen, Joshua R, Hutchinson-Bunch, Chelsea, Gritsenko, Marina A, Weitz, Karl K, Watanabe-Smith, Kevin, Long, Nicola, McDermott, Jason E, Druker, Brian J, Liu, Tao, Tyner, Jeffrey W, Agarwal, Anupriya, Traer, Elie, Piehowski, Paul D, Tognon, Cristina E, Rodland, Karin D, Gosline, Sara J C
Published in Cell reports. Medicine (16.01.2024)
Published in Cell reports. Medicine (16.01.2024)
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Journal Article
Interaction analyses of hTAAR1 and mTAAR1 with antagonist EPPTB
Liao, Siyan, Pino, Michael James, Deleon, Catherine, Lindner-Jackson, Maurice, Wu, Chun
Published in Life sciences (1973) (01.07.2022)
Published in Life sciences (1973) (01.07.2022)
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Journal Article
Coupling microdroplet-based sample preparation, multiplexed isobaric labeling, and nanoflow peptide fractionation for deep proteome profiling of tissue microenvironment
Veličković, Marija, Fillmore, Thomas L, Attah, Kwame, Posso, Camilo, Pino, James C, Zhao, Rui, Williams, Sarah M, Veličković, Dušan, Jacobs, Jon M, Burnum-Johnson, Kristin E, Zhu, Ying, Piehowski, Paul D
Published in bioRxiv (13.03.2023)
Published in bioRxiv (13.03.2023)
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Journal Article
CDK4/6 inhibition enhances SHP2 inhibitor efficacy and is dependent upon restoration of RB function in malignant peripheral nerve sheath tumors
Wang, Jiawan, Calizo, Ana, Zhang, Lindy, Pino, James C, Lyu, Yang, Pollard, Kai, Zhang, Xiaochun, Larsson, Alex T, Conniff, Eric, Llosa, Nicolas, Wood, David K, Largaespada, David A, Moody, Susan E, Gosline, Sara J, Hirbe, Angela C, Pratilas, Christine A
Published in bioRxiv (03.02.2023)
Published in bioRxiv (03.02.2023)
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