Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: Performance evaluation of the new REGA version 3 and seven other tools
Pineda-Peña, Andrea-Clemencia, Faria, Nuno Rodrigues, Imbrechts, Stijn, Libin, Pieter, Abecasis, Ana Barroso, Deforche, Koen, Gómez-López, Arley, Camacho, Ricardo J., de Oliveira, Tulio, Vandamme, Anne-Mieke
Published in Infection, genetics and evolution (01.10.2013)
Published in Infection, genetics and evolution (01.10.2013)
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Journal Article
Inhibitory effect of concomitantly administered rabies immunoglobulins on the immunogenicity of commercial and candidate human rabies vaccines in hamsters
Bernard, Marie-Clotilde, Boudet, Florence, Pineda-Peña, Andrea-Clemencia, Guinet-Morlot, Françoise
Published in Scientific reports (21.04.2022)
Published in Scientific reports (21.04.2022)
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Journal Article
Drivers of HIV-1 transmission: The Portuguese case
Pineda-Peña, Andrea-Clemencia, Pingarilho, Marta, Li, Guangdi, Vrancken, Bram, Libin, Pieter, Gomes, Perpétua, Camacho, Ricardo Jorge, Theys, Kristof, Barroso Abecasis, Ana
Published in PloS one (30.09.2019)
Published in PloS one (30.09.2019)
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Journal Article
Epidemic dispersion of HIV and HCV in a population of co-infected Romanian injecting drug users
Paraschiv, Simona, Banica, Leontina, Nicolae, Ionelia, Niculescu, Iulia, Abagiu, Adrian, Jipa, Raluca, Pineda-Peña, Andrea-Clemencia, Pingarilho, Marta, Neaga, Emil, Theys, Kristof, Libin, Pieter, Otelea, Dan, Abecasis, Ana
Published in PloS one (09.10.2017)
Published in PloS one (09.10.2017)
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Journal Article
Safety and immunogenicity of three dose levels of an investigational, highly purified Vero cell rabies vaccine: A randomized, controlled, observer-blinded, Phase II study with a simulated post-exposure regimen in healthy adults
Pichon, Sylvie, Guinet-Morlot, Francoise, Saleh, Jamshid, Essink, Brandon, Pineda-Peña, Andrea-Clemencia, Moureau, Annick, Petit, Celine, Minutello, Ada-Maria
Published in Human vaccines & immunotherapeutics (15.12.2023)
Published in Human vaccines & immunotherapeutics (15.12.2023)
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Journal Article
Zika genomics urgently need standardized and curated reference sequences
Theys, Kristof, Libin, Pieter, Dallmeier, Kai, Pineda-Peña, Andrea-Clemencia, Vandamme, Anne-Mieke, Cuypers, Lize, Abecasis, Ana B
Published in PLoS pathogens (01.09.2017)
Published in PLoS pathogens (01.09.2017)
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Journal Article
Molecular Epidemiology of HIV-1 Infected Migrants Followed up in Portugal: Trends between 2001-2017
Pimentel, Victor, Pingarilho, Marta, Alves, Daniela, Diogo, Isabel, Fernandes, Sandra, Miranda, Mafalda, Pineda-Pena, Andrea-Clemencia, Libin, Pieter, Martins, M Rosário O, Vandamme, Anne-Mieke, Camacho, Ricardo, Gomes, Perpétua, Abecasis, Ana
Published in Viruses (28.02.2020)
Published in Viruses (28.02.2020)
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Journal Article
HIV-1 Infection in Cyprus, the Eastern Mediterranean European Frontier: A Densely Sampled Transmission Dynamics Analysis from 1986 to 2012
Pineda-Peña, Andrea-Clemencia, Theys, Kristof, Stylianou, Dora C., Demetriades, Ioannis, Abecasis, Ana B., Kostrikis, Leondios G.
Published in Scientific reports (26.01.2018)
Published in Scientific reports (26.01.2018)
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Journal Article
CRF19_cpx is an Evolutionary fit HIV-1 Variant Strongly Associated With Rapid Progression to AIDS in Cuba
Kouri, Vivian, Khouri, Ricardo, Alemán, Yoan, Abrahantes, Yeissel, Vercauteren, Jurgen, Pineda-Peña, Andrea-Clemencia, Theys, Kristof, Megens, Sarah, Moutschen, Michel, Pfeifer, Nico, Van Weyenbergh, Johan, Pérez, Ana B., Pérez, Jorge, Pérez, Lissette, Van Laethem, Kristel, Vandamme, Anne-Mieke
Published in EBioMedicine (01.03.2015)
Published in EBioMedicine (01.03.2015)
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Journal Article
Web Resource
An integrated map of HIV genome-wide variation from a population perspective
Li, Guangdi, Piampongsant, Supinya, Faria, Nuno Rodrigues, Voet, Arnout, Pineda-Peña, Andrea-Clemencia, Khouri, Ricardo, Lemey, Philippe, Vandamme, Anne-Mieke, Theys, Kristof
Published in Retrovirology (15.02.2015)
Published in Retrovirology (15.02.2015)
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Journal Article
Sub-Epidemics Explain Localized High Prevalence of Reduced Susceptibility to Rilpivirine in Treatment-Naive HIV-1-Infected Patients: Subtype and Geographic Compartmentalization of Baseline Resistance Mutations
Theys, Kristof, Van Laethem, Kristel, Gomes, Perpetua, Baele, Guy, Pineda-Peña, Andrea-Clemencia, Vandamme, Anne-Mieke, Camacho, Ricardo J, Abecasis, Ana B
Published in AIDS research and human retroviruses (01.05.2016)
Published in AIDS research and human retroviruses (01.05.2016)
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Journal Article
On the contribution of Angola to the initial spread of HIV-1
Pineda-Peña, Andrea-Clemencia, Varanda, Jorge, Sousa, João Dinis, Theys, Kristof, Bártolo, Inês, Leitner, Thomas, Taveira, Nuno, Vandamme, Anne-Mieke, Abecasis, Ana B.
Published in Infection, genetics and evolution (01.12.2016)
Published in Infection, genetics and evolution (01.12.2016)
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Journal Article
Association of HIV status with infection by multiple HPV types
Camargo, Milena, Del Río‐Ospina, Luisa, Soto‐De León, Sara Cecilia, Sánchez, Ricardo, Pineda‐Peña, Andrea Clemencia, Sussmann, Otto, Patarroyo, Manuel Elkin, Patarroyo, Manuel Alfonso
Published in Tropical medicine & international health (01.11.2018)
Published in Tropical medicine & international health (01.11.2018)
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Journal Article
A new ensemble coevolution system for detecting HIV-1 protein coevolution
Li, Guangdi, Theys, Kristof, Verheyen, Jens, Pineda-Peña, Andrea-Clemencia, Khouri, Ricardo, Piampongsant, Supinya, Eusébio, Mónica, Ramon, Jan, Vandamme, Anne-Mieke
Published in Biology direct (07.01.2015)
Published in Biology direct (07.01.2015)
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Journal Article
Immunogenicity and Safety of a Purified Vero Rabies Vaccine—Serum Free, Compared With 2 Licensed Vaccines, in a Simulated Rabies Post-Exposure Regimen in Healthy Adults in France: A Randomized, Controlled, Phase 3 Trial
Pineda-Peña, Andrea-Clemencia, Jiang, Qian, Petit, Celine, Korejwo-Peyramond, Joanna, Donazzolo, Yves, Latreille, Mathilde, Homery, Marie-Claude, Babin, Valerie, Benamor, Sonia, Pichon, Sylvie, Guinet-Morlot, Françoise, Minutello, Ada-Maria
Published in Clinical infectious diseases (14.06.2024)
Published in Clinical infectious diseases (14.06.2024)
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Journal Article
HIV-1 transmitted drug resistance in Latin America and the Caribbean: what do we know?
Pineda-Peña, Andrea-Clemencia, Bello, Diana-Carolina, Sussmann, Otto, Vandamme, Anne-Mieke, Vercauteren, Jurgen, van Laethem, Kristel, Gómez-López, Arley
Published in AIDS reviews (01.10.2012)
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Published in AIDS reviews (01.10.2012)
Journal Article
The impact of HIV-1 within-host evolution on transmission dynamics
Theys, Kristof, Libin, Pieter, Pineda-Peña, Andrea-Clemencia, Nowé, Ann, Vandamme, Anne-Mieke, Abecasis, Ana B
Published in Current opinion in virology (01.02.2018)
Published in Current opinion in virology (01.02.2018)
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Journal Article
The impact of immigration on tuberculosis and HIV burden between Colombia and Venezuela and across frontier regions
Arenas-Suarez, Nelson Enrique, Cuervo, Laura I., Avila, Edier F., Duitama-Leal, Alejandro, Pineda-Peña, Andrea Clemencia
Published in Cadernos de saúde pública (01.01.2021)
Published in Cadernos de saúde pública (01.01.2021)
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Journal Article
Epidemiological history and genomic characterization of non-D1 HBV strains identified in Iran
Pineda-Peña, Andrea-Clemencia, Faria, Nuno Rodrigues, Mina, Thomas, Amini-Bavil-Olyaee, Samad, Alavian, Seyed Moayed, Lemey, Philippe, Maes, Piet, Ranst, Marc Van, Pourkarim, Mahmoud Reza
Published in Journal of clinical virology (01.02.2015)
Published in Journal of clinical virology (01.02.2015)
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Journal Article
Human papillomavirus detection in women with and without human immunodeficiency virus infection in Colombia
Camargo, Milena, Soto-De Leon, Sara C, Munoz, Marina, Sanchez, Ricardo, Peña-Herrera, Diego, Pineda-Peña, Andrea Clemencia, Sussmann, Otto, Paez, Carol, Perez-Prados, Antonio, Patarroyo, Manuel Elkin, Patarroyo, Manuel Alfonso
Published in BMC cancer (18.06.2014)
Published in BMC cancer (18.06.2014)
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Journal Article