The determination of stem cell fate by 3D scaffold structures through the control of cell shape
Kumar, Girish, Tison, Christopher K, Chatterjee, Kaushik, Pine, P. Scott, McDaniel, Jennifer H, Salit, Marc L, Young, Marian F, Simon, Carl G
Published in Biomaterials (01.12.2011)
Published in Biomaterials (01.12.2011)
Get full text
Journal Article
Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures
Munro, Sarah A., Lund, Steven P., Pine, P. Scott, Binder, Hans, Clevert, Djork-Arné, Conesa, Ana, Dopazo, Joaquin, Fasold, Mario, Hochreiter, Sepp, Hong, Huixiao, Jafari, Nadereh, Kreil, David P., Łabaj, Paweł P., Li, Sheng, Liao, Yang, Lin, Simon M., Meehan, Joseph, Mason, Christopher E., Santoyo-Lopez, Javier, Setterquist, Robert A., Shi, Leming, Shi, Wei, Smyth, Gordon K., Stralis-Pavese, Nancy, Su, Zhenqiang, Tong, Weida, Wang, Charles, Wang, Jian, Xu, Joshua, Ye, Zhan, Yang, Yong, Yu, Ying, Salit, Marc
Published in Nature communications (25.09.2014)
Published in Nature communications (25.09.2014)
Get full text
Journal Article
Using mixtures of biological samples as process controls for RNA-sequencing experiments
Parsons, Jerod, Munro, Sarah, Pine, P Scott, McDaniel, Jennifer, Mehaffey, Michele, Salit, Marc
Published in BMC genomics (17.09.2015)
Published in BMC genomics (17.09.2015)
Get full text
Journal Article
Evaluation of the External RNA Controls Consortium (ERCC) reference material using a modified Latin square design
Pine, P Scott, Munro, Sarah A, Parsons, Jerod R, McDaniel, Jennifer, Lucas, Anne Bergstrom, Lozach, Jean, Myers, Timothy G, Su, Qin, Jacobs-Helber, Sarah M, Salit, Marc
Published in BMC biotechnology (24.06.2016)
Published in BMC biotechnology (24.06.2016)
Get full text
Journal Article
Developmental Neurotoxicity of Ketamine: Morphometric Confirmation, Exposure Parameters, and Multiple Fluorescent Labeling of Apoptotic Neurons
Scallet, A. C., Schmued, L. C., Slikker, W., Grunberg, N., Faustino, P. J., Davis, H., Lester, D., Pine, P. S., Sistare, F., Hanig, J. P.
Published in Toxicological sciences (01.10.2004)
Published in Toxicological sciences (01.10.2004)
Get full text
Journal Article
Two approaches for estimating the lower limit of quantitation (LLOQ) of microRNA levels assayed as exploratory biomarkers by RT-qPCR
Wolfinger, Russell D, Beedanagari, Sudheer, Boitier, Eric, Chen, Tao, Couttet, Philippe, Ellinger-Ziegelbauer, Heidrun, Guillemain, Gregory, Mariet, Claire, Mouritzen, Peter, O'Lone, Raegan, Pine, P Scott, Sharapova, Tatiana, Yan, Jian, Yuen, Peter S, Thompson, Karol L
Published in BMC biotechnology (02.02.2018)
Published in BMC biotechnology (02.02.2018)
Get full text
Journal Article
Ontology analysis of global gene expression differences of human bone marrow stromal cells cultured on 3D scaffolds or 2D films
Baker, Bryan A, Pine, P. Scott, Chatterjee, Kaushik, Kumar, Girish, Lin, Nancy J, McDaniel, Jennifer H, Salit, Marc L, Simon, Carl G
Published in Biomaterials (01.08.2014)
Published in Biomaterials (01.08.2014)
Get full text
Journal Article
Using RNA sample titrations to assess microarray platform performance and normalization techniques
Shippy, Richard, Fulmer-Smentek, Stephanie, Jensen, Roderick V, Jones, Wendell D, Wolber, Paul K, Johnson, Charles D, Pine, P Scott, Boysen, Cecilie, Guo, Xu, Chudin, Eugene, Sun, Yongming Andrew, Willey, James C, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Setterquist, Robert A, Wilson, Mike, Lucas, Anne Bergstrom, Novoradovskaya, Natalia, Papallo, Adam, Turpaz, Yaron, Baker, Shawn C, Warrington, Janet A, Shi, Leming, Herman, Damir
Published in Nature biotechnology (01.09.2006)
Published in Nature biotechnology (01.09.2006)
Get full text
Journal Article
Summarizing performance for genome scale measurement of miRNA: reference samples and metrics
Pine, P Scott, Lund, Steven P, Parsons, Jerod R, Vang, Lindsay K, Mahabal, Ashish A, Cinquini, Luca, Kelly, Sean C, Kincaid, Heather, Crichton, Daniel J, Spira, Avrum, Liu, Gang, Gower, Adam C, Pass, Harvey I, Goparaju, Chandra, Dubinett, Steven M, Krysan, Kostyantyn, Stass, Sanford A, Kukuruga, Debra, Van Keuren-Jensen, Kendall, Courtright-Lim, Amanda, Thompson, Karol L, Rosenzweig, Barry A, Sorbara, Lynn, Srivastava, Sudhir, Salit, Marc L
Published in BMC genomics (06.03.2018)
Published in BMC genomics (06.03.2018)
Get full text
Journal Article
Cell-based reference samples designed with specific differences in microRNA biomarkers
Pine, P Scott, Lund, Steven P, Stass, Sanford A, Kukuruga, Debra, Jiang, Feng, Sorbara, Lynn, Srivastava, Sudhir, Salit, Marc
Published in BMC biotechnology (20.03.2018)
Published in BMC biotechnology (20.03.2018)
Get full text
Journal Article
Absolute Measurement of Cardiac Injury-Induced microRNAs in Biofluids across Multiple Test Sites
Thompson, Karol L, Boitier, Eric, Chen, Tao, Couttet, Philippe, Ellinger-Ziegelbauer, Heidrun, Goetschy, Manuela, Guillemain, Gregory, Kanki, Masayuki, Kelsall, Janet, Mariet, Claire, de La Moureyre-Spire, Catherine, Mouritzen, Peter, Nassirpour, Rounak, O'Lone, Raegan, Pine, P Scott, Rosenzweig, Barry A, Sharapova, Tatiana, Smith, Aaron, Uchiyama, Hidefumi, Yan, Jian, Yuen, Peter S, Wolfinger, Russ
Published in Toxicological sciences (01.11.2016)
Published in Toxicological sciences (01.11.2016)
Get full text
Journal Article
External RNA Controls Consortium Beta Version Update
Lee, Hangnoh, Pine, P Scott, McDaniel, Jennifer, Salit, Marc, Oliver, Brian
Published in Journal of genomics (2016)
Published in Journal of genomics (2016)
Get full text
Journal Article
A Bioinformatics 3D Cellular Morphotyping Strategy for Assessing Biomaterial Scaffold Niches
Florczyk, Stephen J, Simon, Mylene, Juba, Derek, Pine, P. Scott, Sarkar, Sumona, Chen, Desu, Baker, Paula J, Bodhak, Subhadip, Cardone, Antonio, Brady, Mary C, Bajcsy, Peter, Simon, Carl G
Published in ACS biomaterials science & engineering (09.10.2017)
Published in ACS biomaterials science & engineering (09.10.2017)
Get full text
Journal Article
Improvement in the reproducibility and accuracy of DNA microarray quantification by optimizing hybridization conditions
Han, Tao, Melvin, Cathy D, Shi, Leming, Branham, William S, Moland, Carrie L, Pine, P Scott, Thompson, Karol L, Fuscoe, James C
Published in BMC bioinformatics (26.09.2006)
Published in BMC bioinformatics (26.09.2006)
Get full text
Journal Article
Identification of Platform-Independent Gene Expression Markers of Cisplatin Nephrotoxicity
Thompson, Karol L., Afshari, Cynthia A., Amin, Rupesh P., Bertram, Timothy A., Car, Bruce, Cunningham, Michael, Kind, Clive, Kramer, Jeffrey A., Lawton, Michael, Mirsky, Michael, Naciff, Jorge M., Oreffo, Victor, Pine, P. Scott, Sistare, Frank D.
Published in Environmental health perspectives (01.03.2004)
Published in Environmental health perspectives (01.03.2004)
Get full text
Journal Article
An international comparability study on quantification of mRNA gene expression ratios: CCQM-P103.1
Devonshire, Alison S., Sanders, Rebecca, Whale, Alexandra S., Nixon, Gavin J., Cowen, Simon, Ellison, Stephen L.R., Parkes, Helen, Pine, P. Scott, Salit, Marc, McDaniel, Jennifer, Munro, Sarah, Lund, Steve, Matsukura, Satoko, Sekiguchi, Yuji, Kawaharasaki, Mamoru, Granjeiro, José Mauro, Falagan-Lotsch, Priscila, Saraiva, Antonio Marcos, Couto, Paulo, Yang, Inchul, Kwon, Hyerim, Park, Sang-Ryoul, Demšar, Tina, Žel, Jana, Blejec, Andrej, Milavec, Mojca, Dong, Lianhua, Zhang, Ling, Sui, Zhiwei, Wang, Jing, Viroonudomphol, Duangkamol, Prawettongsopon, Chaiwat, Partis, Lina, Baoutina, Anna, Emslie, Kerry, Takatsu, Akiko, Akyurek, Sema, Akgoz, Muslum, Vonsky, Maxim, Konopelko, L.A., Cundapi, Edna Matus, Urquiza, Melina Pérez, Huggett, Jim F., Foy, Carole A.
Published in Biomolecular detection and quantification (01.06.2016)
Published in Biomolecular detection and quantification (01.06.2016)
Get full text
Journal Article