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Published in Nature communications (09.08.2017)
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Combinatorial Transcriptional Control In Blood Stem/Progenitor Cells: Genome-wide Analysis of Ten Major Transcriptional Regulators
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Published in Cell stem cell (08.10.2010)
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Adult Cardiac-Resident MSC-like Stem Cells with a Proepicardial Origin
Chong, James J.H., Chandrakanthan, Vashe, Xaymardan, Munira, Asli, Naisana S., Li, Joan, Ahmed, Ishtiaq, Heffernan, Corey, Menon, Mary K., Scarlett, Christopher J., Rashidianfar, Amirsalar, Biben, Christine, Zoellner, Hans, Colvin, Emily K., Pimanda, John E., Biankin, Andrew V., Zhou, Bin, Pu, William T., Prall, Owen W.J., Harvey, Richard P.
Published in Cell stem cell (02.12.2011)
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BloodChIP Xtra: an expanded database of comparative genome-wide transcription factor binding and gene-expression profiles in healthy human stem/progenitor subsets and leukemic cells
Thoms, Julie A I, Koch, Forrest C, Raei, Alireza, Subramanian, Shruthi, Wong, Jason W H, Vafaee, Fatemeh, Pimanda, John E
Published in Nucleic acids research (05.01.2024)
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Opposing regulation of BIM and BCL2 controls glucocorticoid-induced apoptosis of pediatric acute lymphoblastic leukemia cells
Jing, Duohui, Bhadri, Vivek A., Beck, Dominik, Thoms, JulieA.I., Yakob, Nurul A., Wong, JasonW.H., Knezevic, Kathy, Pimanda, John E., Lock, Richard B.
Published in Blood (08.01.2015)
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Disruption of a GATA2-TAL1-ERG regulatory circuit promotes erythroid transition in healthy and leukemic stem cells
Thoms, Julie A.I., Truong, Peter, Subramanian, Shruthi, Knezevic, Kathy, Harvey, Gregory, Huang, Yizhou, Seneviratne, Janith A., Carter, Daniel R., Joshi, Swapna, Skhinas, Joanna, Chacon, Diego, Shah, Anushi, de Jong, Ineke, Beck, Dominik, Göttgens, Berthold, Larsson, Jonas, Wong, Jason W.H., Zanini, Fabio, Pimanda, John E.
Published in Blood (21.10.2021)
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Jak2V617F and Dnmt3a loss cooperate to induce myelofibrosis through activated enhancer-driven inflammation
Jacquelin, Sebastien, Straube, Jasmin, Cooper, Leanne, Vu, Therese, Song, Axia, Bywater, Megan, Baxter, Eva, Heidecker, Matthew, Wackrow, Brad, Porter, Amy, Ling, Victoria, Green, Joanne, Austin, Rebecca, Kazakoff, Stephen, Waddell, Nicola, Hesson, Luke B., Pimanda, John E., Stegelmann, Frank, Bullinger, Lars, Döhner, Konstanze, Rampal, Raajit K., Heckl, Dirk, Hill, Geoffrey R., Lane, Steven W.
Published in Blood (27.12.2018)
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Lymphocyte-Specific Chromatin Accessibility Pre-determines Glucocorticoid Resistance in Acute Lymphoblastic Leukemia
Jing, Duohui, Huang, Yizhou, Liu, Xiaoyun, Sia, Keith C.S., Zhang, Julia C., Tai, Xiaolu, Wang, Meng, Toscan, Cara E., McCalmont, Hannah, Evans, Kathryn, Mayoh, Chelsea, Poulos, Rebecca C., Span, Miriam, Mi, Jianqing, Zhang, Chao, Wong, Jason W.H., Beck, Dominik, Pimanda, John E., Lock, Richard B.
Published in Cancer cell (10.12.2018)
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Genome-wide analysis of transcriptional regulators in human HSPCs reveals a densely interconnected network of coding and noncoding genes
Beck, Dominik, Thoms, Julie A.I., Perera, Dilmi, Schütte, Judith, Unnikrishnan, Ashwin, Knezevic, Kathy, Kinston, Sarah J., Wilson, Nicola K., O'Brien, Tracey A., Göttgens, Berthold, Wong, Jason W.H., Pimanda, John E.
Published in Blood (03.10.2013)
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Whole-transcriptome analysis of endothelial to hematopoietic stem cell transition reveals a requirement for Gpr56 in HSC generation
Solaimani Kartalaei, Parham, Yamada-Inagawa, Tomoko, Vink, Chris S, de Pater, Emma, van der Linden, Reinier, Marks-Bluth, Jonathon, van der Sloot, Anthon, van den Hout, Mirjam, Yokomizo, Tomomasa, van Schaick-Solernó, M Lucila, Delwel, Ruud, Pimanda, John E, van IJcken, Wilfred F J, Dzierzak, Elaine
Published in The Journal of experimental medicine (12.01.2015)
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DKC1 is a transcriptional target of GATA1 and drives upregulation of telomerase activity in normal human erythroblasts
Richards, Laura A, Kumari, Ashu, Knezevic, Kathy, Thoms, Julie Ai, von Jonquieres, Georg, Napier, Christine E, Ali, Zara, O'Brien, Rosemary, Marks-Bluth, Jonathon, Maritz, Michelle F, Pickett, Hilda A, Morris, Jonathan, Pimanda, John E, MacKenzie, Karen L
Published in Haematologica (Roma) (01.06.2020)
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Murine and related chapparvoviruses are nephro-tropic and produce novel accessory proteins in infected kidneys
Lee, Quintin, Padula, Matthew P, Pinello, Natalia, Williams, Simon H, O'Rourke, Matthew B, Fumagalli, Marcilio Jorge, Orkin, Joseph D, Song, Renhua, Shaban, Babak, Brenner, Ori, Pimanda, John E, Weninger, Wolfgang, Souza, William Marciel de, Melin, Amanda D, Wong, Justin J-L, Crim, Marcus J, Monette, Sébastien, Roediger, Ben, Jolly, Christopher J
Published in PLoS pathogens (01.01.2020)
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Analysing high-throughput sequencing data in Python with HTSeq 2.0
Putri, Givanna H, Anders, Simon, Pyl, Paul Theodor, Pimanda, John E, Zanini, Fabio
Published in Bioinformatics (Oxford, England) (13.05.2022)
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ERG dependence distinguishes developmental control of hematopoietic stem cell maintenance from hematopoietic specification
Taoudi, Samir, Bee, Thomas, Hilton, Adrienne, Knezevic, Kathy, Scott, Julie, Willson, Tracy A, Collin, Caitlin, Thomas, Tim, Voss, Anne K, Kile, Benjamin T, Alexander, Warren S, Pimanda, John E, Hilton, Douglas J
Published in Genes & development (01.02.2011)
Published in Genes & development (01.02.2011)
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Gata2, Fli1, and Scl form a recursively wired gene-regulatory circuit during early hematopoietic development
Pimanda, John E, Ottersbach, Katrin, Knezevic, Kathy, Kinston, Sarah, Chan, Wan Y.I, Wilson, Nicola K, Landry, Josette-Renée, Wood, Andrew D, Kolb-Kokocinski, Anja, Green, Anthony R, Tannahill, David, Lacaud, Georges, Kouskoff, Valerie, Göttgens, Berthold
Published in Proceedings of the National Academy of Sciences - PNAS (06.11.2007)
Published in Proceedings of the National Academy of Sciences - PNAS (06.11.2007)
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Acute myeloid leukemia requires Hhex to enable PRC2-mediated epigenetic repression of Cdkn2a
Shields, Benjamin J, Jackson, Jacob T, Metcalf, Donald, Shi, Wei, Huang, Qiutong, Garnham, Alexandra L, Glaser, Stefan P, Beck, Dominik, Pimanda, John E, Bogue, Clifford W, Smyth, Gordon K, Alexander, Warren S, McCormack, Matthew P
Published in Genes & development (01.01.2016)
Published in Genes & development (01.01.2016)
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Epigenetic silencing of BIM in glucocorticoid poor-responsive pediatric acute lymphoblastic leukemia, and its reversal by histone deacetylase inhibition
Bachmann, Petra S., Piazza, Rocco G., Janes, Mary E., Wong, Nicholas C., Davies, Carwyn, Mogavero, Angela, Bhadri, Vivek A., Szymanska, Barbara, Geninson, Greta, Magistroni, Vera, Cazzaniga, Giovanni, Biondi, Andrea, Miranda-Saavedra, Diego, Göttgens, Berthold, Saffery, Richard, Craig, Jeffrey M., Marshall, Glenn M., Gambacorti-Passerini, Carlo, Pimanda, John E., Lock, Richard B.
Published in Blood (21.10.2010)
Published in Blood (21.10.2010)
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