The Landscape of long noncoding RNA classification
St. Laurent, Georges, Wahlestedt, Claes, Kapranov, Philipp
Published in Trends in genetics (01.05.2015)
Published in Trends in genetics (01.05.2015)
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Journal Article
Hovlinc is a recently evolved class of ribozyme found in human lncRNA
Chen, Yue, Qi, Fei, Gao, Fan, Cao, Huifen, Xu, Dongyang, Salehi-Ashtiani, Kourosh, Kapranov, Philipp
Published in Nature chemical biology (01.05.2021)
Published in Nature chemical biology (01.05.2021)
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Journal Article
A CRISPR/Cas13-based approach demonstrates biological relevance of vlinc class of long non-coding RNAs in anticancer drug response
Xu, Dongyang, Cai, Ye, Tang, Lu, Han, Xueer, Gao, Fan, Cao, Huifen, Qi, Fei, Kapranov, Philipp
Published in Scientific reports (04.02.2020)
Published in Scientific reports (04.02.2020)
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Journal Article
Complex genomic patterns of abasic sites in mammalian DNA revealed by a high-resolution SSiNGLe-AP method
Cai, Ye, Cao, Huifen, Wang, Fang, Zhang, Yufei, Kapranov, Philipp
Published in Nature communications (05.10.2022)
Published in Nature communications (05.10.2022)
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Journal Article
Genome-wide transcription and the implications for genomic organization
Gingeras, Thomas R, Kapranov, Philipp, Willingham, Aarron T
Published in Nature reviews. Genetics (01.06.2007)
Published in Nature reviews. Genetics (01.06.2007)
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Journal Article
Bromodomain protein BRD4 controls HOTAIR, a long noncoding RNA essential for glioblastoma proliferation
Pastori, Chiara, Philipp Kapranov, Clara Penas, Veronica Peschansky, Claude-Henry Volmar, Jann N. Sarkaria, Amade Bregy, Ricardo Komotar, Georges St. Laurent, Nagi G. Ayad, Claes Wahlestedt
Published in Proceedings of the National Academy of Sciences - PNAS (07.07.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (07.07.2015)
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Journal Article
Common occurrence of hotspots of single strand DNA breaks at transcriptional start sites
Cao, Huifen, Zhang, Yufei, Song, Tianrong, Xia, Lu, Cai, Ye, Kapranov, Philipp
Published in BMC genomics (15.04.2024)
Published in BMC genomics (15.04.2024)
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Journal Article
Evidence for widespread existence of functional novel and non-canonical human transcripts
Xu, Dongyang, Tang, Lu, Zhou, Junjun, Wang, Fang, Cao, Huifen, Huang, Yu, Kapranov, Philipp
Published in BMC biology (24.11.2023)
Published in BMC biology (24.11.2023)
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Journal Article
Dynamic Patterns of Mammalian Mitochondrial DNA Replication Uncovered Using SSiNGLe-5′ES
Xu, Dongyang, Luo, Lingcong, Huang, Yu, Lu, Meng, Tang, Lu, Diao, Yong, Kapranov, Philipp
Published in International journal of molecular sciences (01.06.2023)
Published in International journal of molecular sciences (01.06.2023)
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Journal Article
Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells
St Laurent, Georges, Shtokalo, Dmitry, Tackett, Michael R, Yang, Zhaoqing, Eremina, Tatyana, Wahlestedt, Claes, Urcuqui-Inchima, Silvio, Seilheimer, Bernd, McCaffrey, Timothy A, Kapranov, Philipp
Published in BMC genomics (24.09.2012)
Published in BMC genomics (24.09.2012)
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Journal Article
RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
Kapranov, Philipp, Cheng, Jill, Dike, Sujit, Nix, David A., Duttagupta, Radharani, Willingham, Aarron T., Stadler, Peter F., Hertel, Jana, Hackermüller, Jörg, Hofacker, Ivo L., Bell, Ian, Cheung, Evelyn, Drenkow, Jorg, Dumais, Erica, Patel, Sandeep, Helt, Gregg, Ganesh, Madhavan, Ghosh, Srinka, Piccolboni, Antonio, Sementchenko, Victor, Tammana, Hari, Gingeras, Thomas R.
Published in Science (American Association for the Advancement of Science) (08.06.2007)
Published in Science (American Association for the Advancement of Science) (08.06.2007)
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Journal Article
A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster
Zhang, Xueqing, Lian, Zheng, Padden, Carolyn, Gerstein, Mark B., Rozowsky, Joel, Snyder, Michael, Gingeras, Thomas R., Kapranov, Philipp, Weissman, Sherman M., Newburger, Peter E.
Published in Blood (12.03.2009)
Published in Blood (12.03.2009)
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Journal Article
5-hmC in the brain is abundant in synaptic genes and shows differences at the exon-intron boundary
Khare, Tarang, Pai, Shraddha, Koncevicius, Karolis, Pal, Mrinal, Kriukiene, Edita, Liutkeviciute, Zita, Irimia, Manuel, Jia, Peixin, Ptak, Carolyn, Xia, Menghang, Tice, Raymond, Tochigi, Mamoru, Moréra, Solange, Nazarians, Anaies, Belsham, Denise, Wong, Albert H C, Blencowe, Benjamin J, Wang, Sun Chong, Kapranov, Philipp, Kustra, Rafal, Labrie, Viviane, Klimasauskas, Saulius, Petronis, Arturas
Published in Nature structural & molecular biology (01.10.2012)
Published in Nature structural & molecular biology (01.10.2012)
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Journal Article
Lessons from discovery of true ADAR RNA editing sites in a human cell line
Wang, Fang, Cao, Huifen, Xia, Qiu, Liu, Ziheng, Wang, Ming, Gao, Fan, Xu, Dongyang, Deng, Bolin, Diao, Yong, Kapranov, Philipp
Published in BMC biology (19.07.2023)
Published in BMC biology (19.07.2023)
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Journal Article
Genome-Wide Profiling of Endogenous Single-Stranded DNA Using the SSiNGLe-P1 Method
Xu, Dongyang, Huang, Yu, Luo, Lingcong, Tang, Lu, Lu, Meng, Cao, Huifen, Wang, Fang, Diao, Yong, Lyubchenko, Liudmila, Kapranov, Philipp
Published in International journal of molecular sciences (27.07.2023)
Published in International journal of molecular sciences (27.07.2023)
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