Urinary cell-free DNA is a versatile analyte for monitoring infections of the urinary tract
Burnham, Philip, Dadhania, Darshana, Heyang, Michael, Chen, Fanny, Westblade, Lars F, Suthanthiran, Manikkam, Lee, John Richard, De Vlaminck, Iwijn
Published in Nature communications (20.06.2018)
Published in Nature communications (20.06.2018)
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Journal Article
Gut uropathogen abundance is a risk factor for development of bacteriuria and urinary tract infection
Magruder, Matthew, Sholi, Adam N, Gong, Catherine, Zhang, Lisa, Edusei, Emmanuel, Huang, Jennifer, Albakry, Shady, Satlin, Michael J, Westblade, Lars F, Crawford, Carl, Dadhania, Darshana M, Lubetzky, Michelle, Taur, Ying, Littman, Eric, Ling, Lilan, Burnham, Philip, De Vlaminck, Iwijn, Pamer, Eric, Suthanthiran, Manikkam, Lee, John Richard
Published in Nature communications (04.12.2019)
Published in Nature communications (04.12.2019)
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Journal Article
Myriad Applications of Circulating Cell-Free DNA in Precision Organ Transplant Monitoring
Burnham, Philip, Khush, Kiran, De Vlaminck, Iwijn
Published in Annals of the American Thoracic Society (01.09.2017)
Published in Annals of the American Thoracic Society (01.09.2017)
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Journal Article
Biopsy‐free screening for glioma
Cheng, Alexandre Pellan, Burnham, Philip, De Vlaminck, Iwijn
Published in EMBO molecular medicine (01.12.2018)
Published in EMBO molecular medicine (01.12.2018)
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Journal Article
Metagenomic DNA sequencing to quantify Mycobacterium tuberculosis DNA and diagnose tuberculosis
Chang, Adrienne, Mzava, Omary, Djomnang, Liz-Audrey Kounatse, Lenz, Joan Sesing, Burnham, Philip, Kaplinsky, Peter, Andama, Alfred, Connelly, John, Bachman, Christine M, Cattamanchi, Adithya, Steadman, Amy, De Vlaminck, Iwijn
Published in Scientific reports (10.10.2022)
Published in Scientific reports (10.10.2022)
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Journal Article
Causal role of the gut microbiome in certain human diseases: a narrative review
Prosty, Connor, Katergi, Khaled, Papenburg, Jesse, Lawandi, Alexander, Lee, Todd C, Shi, Hao, Burnham, Philip, Swem, Lee, Routy, Bertrand, Yansouni, Cedric P, Cheng, Matthew P
Published in eGastroenterology (01.09.2024)
Published in eGastroenterology (01.09.2024)
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Journal Article
Cell-free DNA (cfDNA) and Exosome Profiling from a Year-Long Human Spaceflight Reveals Circulating Biomarkers
Bezdan, Daniela, Grigorev, Kirill, Meydan, Cem, Pelissier Vatter, Fanny A., Cioffi, Michele, Rao, Varsha, MacKay, Matthew, Nakahira, Kiichi, Burnham, Philip, Afshinnekoo, Ebrahim, Westover, Craig, Butler, Daniel, Mozsary, Chris, Donahoe, Timothy, Foox, Jonathan, Mishra, Tejaswini, Lucotti, Serena, Rana, Brinda K., Melnick, Ari M., Zhang, Haiying, Matei, Irina, Kelsen, David, Yu, Kenneth, Lyden, David C., Taylor, Lynn, Bailey, Susan M., Snyder, Michael P., Garrett-Bakelman, Francine E., Ossowski, Stephan, De Vlaminck, Iwijn, Mason, Christopher E.
Published in iScience (18.12.2020)
Published in iScience (18.12.2020)
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Journal Article
Development of a comprehensive noninvasive prenatal test
Malcher, Carolina, Yamamoto, Guilherme L, Burnham, Philip, Ezquina, Suzana A M, Lourenço, Naila C V, Balkassmi, Sahilla, Antonio, David S Marco, Hsia, Gabriella S P, Gollop, Thomaz, Pavanello, Rita C, Lopes, Marco Antonio, Bakker, Egbert, Zatz, Mayana, Bertola, Débora, Vlaminck, Iwijn De, Passos-Bueno, Maria Rita
Published in Genetics and molecular biology (01.07.2018)
Published in Genetics and molecular biology (01.07.2018)
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Journal Article
A cell-free DNA metagenomic sequencing assay that integrates the host injury response to infection
Cheng, Alexandre Pellan, Burnham, Philip, Lee, John Richard, Cheng, Matthew Pellan, Suthanthiran, Manikkam, Dadhania, Darshana, De Vlaminck, Iwijn
Published in Proceedings of the National Academy of Sciences - PNAS (10.09.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (10.09.2019)
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Journal Article
Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells
Saikia, Mridusmita, Burnham, Philip, Keshavjee, Sara H, Wang, Michael F Z, Heyang, Michael, Moral-Lopez, Pablo, Hinchman, Meleana M, Danko, Charles G, Parker, John S L, De Vlaminck, Iwijn
Published in Nature methods (01.01.2019)
Published in Nature methods (01.01.2019)
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Journal Article
Cell-free DNA profiling informs all major complications of hematopoietic cell transplantation
Cheng, Alexandre Pellan, Cheng, Matthew Pellan, Loy, Conor James, Lenz, Joan Sesing, Chen, Kaiwen, Smalling, Sami, Burnham, Philip, Timblin, Kaitlyn Marie, Orejas, José Luis, Silverman, Emily, Polak, Paz, Marty, Francisco M, Ritz, Jerome, De Vlaminck, Iwijn
Published in Proceedings of the National Academy of Sciences - PNAS (25.01.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (25.01.2022)
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Journal Article
Correlating Size and Composition-Dependent Effects with Magnetic, Mössbauer, and Pair Distribution Function Measurements in a Family of Catalytically Active Ferrite Nanoparticles
Tiano, Amanda L., Papaefthymiou, Georgia C., Lewis, Crystal S., Han, Jinkyu, Zhang, Cheng, Li, Qiang, Shi, Chenyang, Abeykoon, A. M. Milinda, Billinge, Simon J. L., Stach, Eric, Thomas, Justin, Guerrero, Kevin, Munayco, Pablo, Munayco, Jimmy, Scorzelli, Rosa B., Burnham, Philip, Viescas, Arthur J., Wong, Stanislaus S.
Published in Chemistry of materials (26.05.2015)
Published in Chemistry of materials (26.05.2015)
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Journal Article
Measurement Biases Distort Cell-Free DNA Fragmentation Profiles and Define the Sensitivity of Metagenomic Cell-Free DNA Sequencing Assays
Chang, Adrienne, Mzava, Omary, Lenz, Joan S, Cheng, Alexandre P, Burnham, Philip, Motley, S Timothy, Bennett, Crissa, Connelly, John T, Dadhania, Darshana M, Suthanthiran, Manikkam, Lee, John R, Steadman, Amy, De Vlaminck, Iwijn
Published in Clinical chemistry (Baltimore, Md.) (30.12.2021)
Published in Clinical chemistry (Baltimore, Md.) (30.12.2021)
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Journal Article
Measurement Biases Distort Cell-Free DNA Fragmentation Profiles and Define the Sensitivity of Metagenomic Cell-Free DNA Sequencing Assays
Chang, Adrienne, Mzava, Omary, Lenz, Joan S, Cheng, Alexandre P, Burnham, Philip, Motley, S. Timothy, Bennett, Crissa, Connelly, John T, Dadhania, Darshana M, Suthanthiran, Manikkam, Lee, John R, Steadman, Amy, De Vlaminck, Iwijn
Published in Clinical chemistry (Baltimore, Md.) (01.01.2022)
Published in Clinical chemistry (Baltimore, Md.) (01.01.2022)
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Journal Article
Image-based profiling: a powerful and challenging new data type
Way, Gregory P, Spitzer, Hannah, Burnham, Philip, Raj, Arjun, Theis, Fabian, Singh, Shantanu, Carpenter, Anne E
Published in Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2022)
Published in Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2022)
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Journal Article
Peritoneal Effluent Cell-Free DNA Sequencing in Peritoneal Dialysis Patients With and Without Peritonitis
Burnham, Philip, Chen, Fanny, Cheng, Alexandre P., Srivatana, Vesh, Zhang, Lisa T., Edusei, Emmanuel, Albakry, Shady, Botticelli, Brittany, Guo, Xunxi, Renaghan, Amanda, Silberzweig, Jeffrey, Dadhania, Darshana M., Lenz, Joan S., Heyang, Michael, Iliev, Iliyan D., Hayden, Joshua A., Westblade, Lars F., De Vlaminck, Iwijn, Lee, John R.
Published in Kidney medicine (01.01.2022)
Published in Kidney medicine (01.01.2022)
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Journal Article
Peritoneal Effluent Cell-Free DNA Sequencing in Peritoneal Dialysis Patients With and Without PeritonitisPlain Language Summary
Philip Burnham, Fanny Chen, Alexandre P. Cheng, Vesh Srivatana, Lisa T. Zhang, Emmanuel Edusei, Shady Albakry, Brittany Botticelli, Xunxi Guo, Amanda Renaghan, Jeffrey Silberzweig, Darshana M. Dadhania, Joan S. Lenz, Michael Heyang, Iliyan D. Iliev, Joshua A. Hayden, Lars F. Westblade, Iwijn De Vlaminck, John R. Lee
Published in Kidney medicine (01.01.2022)
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Published in Kidney medicine (01.01.2022)
Journal Article
Correlating Size and Composition-Dependent Effects with Magnetic, Mössbauer, and Pair Distribution Function Measurements in a Family of Catalytically Active Ferrite Nanoparticles
Tiano, Amanda L., Papaefthymiou, Georgia C., Lewis, Crystal S., Han, Jinkyu, Zhang, Cheng, Li, Qiang, Shi, Chenyang, Abeykoon, A. M. Milinda, Billinge, Simon J. L., Stach, Eric, Thomas, Justin, Guerrero, Kevin, Munayco, Pablo, Munayco, Jimmy, Scorzelli, Rosa B., Burnham, Philip, Viescas, Arthur J., Wong, Stanislaus S.
Published in Chemistry of materials (26.05.2015)
Published in Chemistry of materials (26.05.2015)
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Journal Article
Methods of detecting cell-free DNA in biological samples
De Vlaminck, Iwijn, Burnham, Philip Smith, Lee, John Richard, Suthanthrian, Manikkam, Cheng, Alexandre Pellan, Dadhania, Darshana
Year of Publication 10.10.2023
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Year of Publication 10.10.2023
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