Heat-induced degradation of fibrils: Exponential vs logistic kinetics
Co, Nguyen Truong, Lan, Pham Dang, Quoc Huy, Pham Dinh, Li, Mai Suan
Published in The Journal of chemical physics (21.03.2020)
Published in The Journal of chemical physics (21.03.2020)
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Journal Article
Bexarotene cannot reduce amyloid beta plaques through inhibition of production of amyloid beta peptides: in silico and in vitro study
Pham, Huy Dinh Quoc, Thai, Nguyen Quoc, Bednarikova, Zuzana, Linh, Huynh Quang, Gazova, Zuzana, Li, Mai Suan
Published in Physical chemistry chemical physics : PCCP (2018)
Published in Physical chemistry chemical physics : PCCP (2018)
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Journal Article
Zinc binding promotes greater hydrophobicity in Alzheimer's Aβ42 peptide than copper binding: Molecular dynamics and solvation thermodynamics studies
Boopathi, Subramanian, Dinh Quoc Huy, Pham, Gonzalez, Wendy, Theodorakis, Panagiotis E., Li, Mai Suan
Published in Proteins, structure, function, and bioinformatics (01.10.2020)
Published in Proteins, structure, function, and bioinformatics (01.10.2020)
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Journal Article
Plant isoquinoline alkaloids as potential neurodrugs: A comparative study of the effects of benzo[c]phenanthridine and berberine-based compounds on β-amyloid aggregation
Marasco, Daniela, Vicidomini, Caterina, Krupa, Pawel, Cioffi, Federica, Huy, Pham Dinh Quoc, Li, Mai Suan, Florio, Daniele, Broersen, Kerensa, De Pandis, Maria Francesca, Roviello, Giovanni N.
Published in Chemico-biological interactions (25.01.2021)
Published in Chemico-biological interactions (25.01.2021)
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Journal Article
Fullerenol C60(OH)16 prevents amyloid fibrillization of Aβ40-in vitro and in silico approach
Bednarikova, Zuzana, Huy, Pham Dinh Quoc, Mocanu, Maria-Magdalena, Fedunova, Diana, Li, Mai Suan, Gazova, Zuzana
Published in Physical chemistry chemical physics : PCCP (28.07.2016)
Published in Physical chemistry chemical physics : PCCP (28.07.2016)
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Journal Article
Treatment of flexibility of protein backbone in simulations of protein-ligand interactions using steered molecular dynamics
Truong, Duc Toan, Ho, Kiet, Pham, Dinh Quoc Huy, Chwastyk, Mateusz, Nguyen-Minh, Thai, Nguyen, Minh Tho
Published in Scientific reports (07.05.2024)
Published in Scientific reports (07.05.2024)
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Journal Article
Binding of fullerenes to amyloid beta fibrils: size matters
Huy, Pham Dinh Quoc, Li, Mai Suan
Published in Physical chemistry chemical physics : PCCP (07.10.2014)
Published in Physical chemistry chemical physics : PCCP (07.10.2014)
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Journal Article
The coexistence region in the Van der Waals fluid and the liquid-liquid phase transitions
Pham, Dinh Quoc Huy, Chwastyk, Mateusz, Cieplak, Marek
Published in Frontiers in chemistry (25.01.2023)
Published in Frontiers in chemistry (25.01.2023)
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Journal Article
Anti-arrhythmic Medication Propafenone a Potential Drug for Alzheimer’s Disease Inhibiting Aggregation of Aβ: In Silico and in Vitro Studies
Ngo, Son Tung, Fang, Shang-Ting, Huang, Shu-Hsiang, Chou, Chao-Liang, Huy, Pham Dinh Quoc, Li, Mai Suan, Chen, Yi-Cheng
Published in Journal of chemical information and modeling (25.07.2016)
Published in Journal of chemical information and modeling (25.07.2016)
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Journal Article
Dual binding in cohesin-dockerin complexes: the energy landscape and the role of short, terminal segments of the dockerin module
Wojciechowski, Michał, Różycki, Bartosz, Huy, Pham Dinh Quoc, Li, Mai Suan, Bayer, Edward A, Cieplak, Marek
Published in Scientific reports (22.03.2018)
Published in Scientific reports (22.03.2018)
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Journal Article
In silico and in vitro characterization of anti-amyloidogenic activity of vitamin K3 analogues for Alzheimer's disease
Huy, Pham Dinh Quoc, Yu, Yao-Chung, Ngo, Son Tung, Thao, Tran Van, Chen, Chin-piao, Li, Mai Suan, Chen, Yi-Cheng
Published in Biochimica et biophysica acta (01.04.2013)
Published in Biochimica et biophysica acta (01.04.2013)
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Journal Article
Inhibition of insulin amyloid fibrillization by glyco-acridines: an in vitro and in silico study
Van Vuong, Quan, Bednarikova, Zuzana, Antosova, Andrea, Huy, Pham Dinh Quoc, Siposova, Katarina, Tuan, Nguyen Anh, Li, Mai Suan, Gazova, Zuzana
Published in MedChemComm (13.05.2015)
Published in MedChemComm (13.05.2015)
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Journal Article
Copper Binding Induces Polymorphism in Amyloid‑β Peptide: Results of Computational Models
Pham, Dinh Quoc Huy, Li, Mai Suan, La Penna, Giovanni
Published in The journal of physical chemistry. B (26.07.2018)
Published in The journal of physical chemistry. B (26.07.2018)
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Journal Article
Binding of fullerenes to amyloid beta fibrils: size mattersElectronic supplementary information (ESI) available: Details of molecular dynamics simulations, the list of the most important residues, population of the salt bridge Asp23-Lys28, mean values of fibril contacts, time dependence of RMSD, the interaction energies, the number of fibril contacts and water molecules in the interior of fibrils, the correlation between van der Waals energy and binding free energy, the coordinates of the struct
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Journal Article
Bexarotene cannot reduce amyloid beta plaques through inhibition of production of amyloid beta peptides: in silico and in vitro studyElectronic supplementary information (ESI) available: Optimized structure and parameters used for simulation of bexarotene; the binding free energies of bexarotene to PPAR-γ, RXR-α, and β-secretase in four MD runs; and the time dependence of the RMSD and interaction energy of the complexes of bexarotene with RXR-α, and β-secretase. See DOI: 10.1039/c8cp00049b
Pham, Huy Dinh Quoc, Thai, Nguyen Quoc, Bednarikova, Zuzana, Linh, Huynh Quang, Gazova, Zuzana, Li, Mai Suan
Year of Publication 26.09.2018
Year of Publication 26.09.2018
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Journal Article
Fullerenol C60(OH)16 prevents amyloid fibrillization of Aβ40 - in vitro and in silico approachElectronic supplementary information (ESI) available. See DOI: 10.1039/c6cp00901h
Bednarikova, Zuzana, Huy, Pham Dinh Quoc, Mocanu, Maria-Magdalena, Fedunova, Diana, Li, Mai Suan, Gazova, Zuzana
Year of Publication 13.07.2016
Year of Publication 13.07.2016
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Journal Article
Fullerenol C60(OH)16 prevents amyloid fibrillization of A beta 40 - in vitro and in silico approach
Bednarikova, Zuzana, Huy, Pham Dinh Quoc, Mocanu, Maria-Magdalena, Fedunova, Diana, Li, Mai Suan, Gazova, Zuzana
Published in Physical chemistry chemical physics : PCCP (01.07.2016)
Published in Physical chemistry chemical physics : PCCP (01.07.2016)
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