Assembly of long, error-prone reads using repeat graphs
Kolmogorov, Mikhail, Yuan, Jeffrey, Lin, Yu, Pevzner, Pavel A
Published in Nature biotechnology (01.05.2019)
Published in Nature biotechnology (01.05.2019)
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metaSPAdes: a new versatile metagenomic assembler
Nurk, Sergey, Meleshko, Dmitry, Korobeynikov, Anton, Pevzner, Pavel A
Published in Genome research (01.05.2017)
Published in Genome research (01.05.2017)
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Journal Article
hybridSPAdes: an algorithm for hybrid assembly of short and long reads
Antipov, Dmitry, Korobeynikov, Anton, McLean, Jeffrey S, Pevzner, Pavel A
Published in Bioinformatics (01.04.2016)
Published in Bioinformatics (01.04.2016)
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Journal Article
plasmidSPAdes: assembling plasmids from whole genome sequencing data
Antipov, Dmitry, Hartwick, Nolan, Shen, Max, Raiko, Mikhail, Lapidus, Alla, Pevzner, Pavel A
Published in Bioinformatics (Oxford, England) (15.11.2016)
Published in Bioinformatics (Oxford, England) (15.11.2016)
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Journal Article
Plasmid detection and assembly in genomic and metagenomic data sets
Antipov, Dmitry, Raiko, Mikhail, Lapidus, Alla, Pevzner, Pavel A
Published in Genome research (01.06.2019)
Published in Genome research (01.06.2019)
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Journal Article
How to apply de Bruijn graphs to genome assembly
Compeau, Phillip E C, Pevzner, Pavel A, Tesler, Glenn
Published in Nature biotechnology (01.11.2011)
Published in Nature biotechnology (01.11.2011)
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Journal Article
Assembly of long error-prone reads using de Bruijn graphs
Lin, Yu, Yuan, Jeffrey, Kolmogorov, Mikhail, Shen, Max W., Chaisson, Mark, Pevzner, Pavel A.
Published in Proceedings of the National Academy of Sciences - PNAS (27.12.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (27.12.2016)
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Journal Article
Dereplication of microbial metabolites through database search of mass spectra
Mohimani, Hosein, Gurevich, Alexey, Shlemov, Alexander, Mikheenko, Alla, Korobeynikov, Anton, Cao, Liu, Shcherbin, Egor, Nothias, Louis-Felix, Dorrestein, Pieter C, Pevzner, Pavel A
Published in Nature communications (02.10.2018)
Published in Nature communications (02.10.2018)
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Journal Article
Dereplication of peptidic natural products through database search of mass spectra
Mohimani, Hosein, Gurevich, Alexey, Mikheenko, Alla, Garg, Neha, Nothias, Louis-Felix, Ninomiya, Akihiro, Takada, Kentaro, Dorrestein, Pieter C, Pevzner, Pavel A
Published in Nature chemical biology (01.01.2017)
Published in Nature chemical biology (01.01.2017)
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Journal Article
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
Bankevich, Anton, Nurk, Sergey, Antipov, Dmitry, Gurevich, Alexey A, Dvorkin, Mikhail, Kulikov, Alexander S, Lesin, Valery M, Nikolenko, Sergey I, Pham, Son, Prjibelski, Andrey D, Pyshkin, Alexey V, Sirotkin, Alexander V, Vyahhi, Nikolay, Tesler, Glenn, Alekseyev, Max A, Pevzner, Pavel A
Published in Journal of computational biology (01.05.2012)
Published in Journal of computational biology (01.05.2012)
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Journal Article
Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features
Yutin, Natalya, Benler, Sean, Shmakov, Sergei A, Wolf, Yuri I, Tolstoy, Igor, Rayko, Mike, Antipov, Dmitry, Pevzner, Pavel A, Koonin, Eugene V
Published in Nature communications (16.02.2021)
Published in Nature communications (16.02.2021)
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Journal Article
The string decomposition problem and its applications to centromere analysis and assembly
Dvorkina, Tatiana, Bzikadze, Andrey V, Pevzner, Pavel A
Published in Bioinformatics (Oxford, England) (01.07.2020)
Published in Bioinformatics (Oxford, England) (01.07.2020)
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Journal Article
viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data
Antipov, Dmitry, Rayko, Mikhail, Kolmogorov, Mikhail, Pevzner, Pavel A
Published in Genome Biology (21.02.2022)
Published in Genome Biology (21.02.2022)
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