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AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
Feldgarden, Michael, Brover, Vyacheslav, Gonzalez-Escalona, Narjol, Frye, Jonathan G., Haendiges, Julie, Haft, Daniel H., Hoffmann, Maria, Pettengill, James B., Prasad, Arjun B., Tillman, Glenn E., Tyson, Gregory H., Klimke, William
Published in Scientific reports (16.06.2021)
Published in Scientific reports (16.06.2021)
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Interpreting Whole-Genome Sequence Analyses of Foodborne Bacteria for Regulatory Applications and Outbreak Investigations
Pightling, Arthur W., Pettengill, James B., Luo, Yan, Baugher, Joseph D., Rand, Hugh, Strain, Errol
Published in Frontiers in microbiology (10.07.2018)
Published in Frontiers in microbiology (10.07.2018)
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Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence
Daeschel, Devin, Pettengill, James B., Wang, Yu, Chen, Yi, Allard, Marc, Snyder, Abigail B.
Published in BMC genomics (04.07.2022)
Published in BMC genomics (04.07.2022)
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Phylogenetic Analyses of Shigella and Enteroinvasive Escherichia coli for the Identification of Molecular Epidemiological Markers: Whole-Genome Comparative Analysis Does Not Support Distinct Genera Designation
Pettengill, Emily A., Pettengill, James B., Binet, Rachel
Published in Frontiers in microbiology (19.01.2016)
Published in Frontiers in microbiology (19.01.2016)
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Transient and resident pathogens: Intra-facility genetic diversity of Listeria monocytogenes and Salmonella from food production environments
Pettengill, James B., Rand, Hugh, Wang, Shizhen S., Kautter, Donald, Pightling, Arthur, Wang, Yu
Published in PloS one (01.09.2022)
Published in PloS one (01.09.2022)
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Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato)
Ottesen, Andrea R, González Peña, Antonio, White, James R, Pettengill, James B, Li, Cong, Allard, Sarah, Rideout, Steven, Allard, Marc, Hill, Thomas, Evans, Peter, Strain, Errol, Musser, Steven, Knight, Rob, Brown, Eric
Published in BMC microbiology (24.05.2013)
Published in BMC microbiology (24.05.2013)
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Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation
Commichaux, Seth, Rand, Hugh, Javkar, Kiran, Molloy, Erin K., Pettengill, James B., Pightling, Arthur, Hoffmann, Maria, Pop, Mihai, Jayeola, Victor, Foley, Steven, Luo, Yan
Published in BMC genomics (04.04.2023)
Published in BMC genomics (04.04.2023)
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Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination
Pightling, Arthur W., Pettengill, James B., Wang, Yu, Rand, Hugh, Strain, Errol
Published in Genome Biology (18.12.2019)
Published in Genome Biology (18.12.2019)
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Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain
Haendiges, Julie, Davidson, Gordon R., Pettengill, James B., Reed, Elizabeth, Ramachandran, Padmini, Blessington, Tyann, Miller, Jesse D., Anderson, Nathan, Myoda, Sam, Brown, Eric W., Zheng, Jie, Tikekar, Rohan, Hoffmann, Maria
Published in PloS one (04.11.2021)
Published in PloS one (04.11.2021)
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Multinational Outbreak of Listeria monocytogenes Infections Linked to Enoki Mushrooms Imported from the Republic of Korea 2016–2020
Pereira, Evelyn, Conrad, Amanda, Tesfai, Adiam, Palacios, Alexandra, Kandar, Rima, Kearney, Ashley, Locas, Annie, Jamieson, Fred, Elliot, Elisa, Otto, Mark, Kurdilla, Kerry, Tijerina, Mary, Son, Insook, Pettengill, James B., Chen, Yi, Fox, Teresa, Lane, Chris, Aguillon, Ryan, Huffman, Jasmine, Sheau Fong Low, Mabel, Wise, Matthew, Edwards, Lauren, Bidol, Sally, Blankenship, Heather M., Rosen, Hilary E., Leclercq, Alexandre, Lecuit, Marc, Tourdjman, Mathieu, Herber, Hubert, Singleton, Lauren S., Viazis, Stelios, Bazaco, Michael C.
Published in Journal of food protection (01.07.2023)
Published in Journal of food protection (01.07.2023)
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Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples
Kayikcioglu, Tunc, Amirzadegan, Jasmine, Rand, Hugh, Tesfaldet, Bereket, Timme, Ruth E., Pettengill, James B.
Published in PeerJ (San Francisco, CA) (26.01.2023)
Published in PeerJ (San Francisco, CA) (26.01.2023)
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Evaluation of Virulence Determinants Using Whole-Genome Sequencing and Phenotypic Biofilm Analysis of Outbreak-Linked Staphylococcus aureus Isolates
Hait, Jennifer M., Cao, Guojie, Kastanis, George, Yin, Lanlan, Pettengill, James B., Tallent, Sandra M.
Published in Frontiers in microbiology (29.06.2021)
Published in Frontiers in microbiology (29.06.2021)
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Evaluation of Avocados as a Possible Source of Listeria monocytogenes Infections, United States, 2016 to 2019
Pomeroy, Mary, Conrad, Amanda, Pettengill, James B., McClure, Monica, Wellman, Allison A., Marus, Jessie, Huffman, Jasmine, Wise, Matthew
Published in Journal of food protection (01.07.2021)
Published in Journal of food protection (01.07.2021)
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Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples
Pettengill, James B., Pightling, Arthur W., Baugher, Joseph D., Rand, Hugh, Strain, Errol
Published in PloS one (10.11.2016)
Published in PloS one (10.11.2016)
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