Feedback Loops of the Mammalian Circadian Clock Constitute Repressilator
Pett, J Patrick, Korenčič, Anja, Wesener, Felix, Kramer, Achim, Herzel, Hanspeter
Published in PLoS computational biology (01.12.2016)
Published in PLoS computational biology (01.12.2016)
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Weak coupling between intracellular feedback loops explains dissociation of clock gene dynamics
Schmal, Christoph, Ono, Daisuke, Myung, Jihwan, Pett, J Patrick, Honma, Sato, Honma, Ken-Ichi, Herzel, Hanspeter, Tokuda, Isao T
Published in PLoS computational biology (12.09.2019)
Published in PLoS computational biology (12.09.2019)
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Co-existing feedback loops generate tissue-specific circadian rhythms
Pett, J Patrick, Kondoff, Matthew, Bordyugov, Grigory, Kramer, Achim, Herzel, Hanspeter
Published in Life science alliance (01.06.2018)
Published in Life science alliance (01.06.2018)
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Journal Article
Organoid modeling of human fetal lung alveolar development reveals mechanisms of cell fate patterning and neonatal respiratory disease
Lim, Kyungtae, Donovan, Alex P.A., Tang, Walfred, Sun, Dawei, He, Peng, Pett, J. Patrick, Teichmann, Sarah A., Marioni, John C., Meyer, Kerstin B., Brand, Andrea H., Rawlins, Emma L.
Published in Cell stem cell (05.01.2023)
Published in Cell stem cell (05.01.2023)
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A spatially resolved atlas of the human lung characterizes a gland-associated immune niche
Madissoon, Elo, Oliver, Amanda J., Kleshchevnikov, Vitalii, Wilbrey-Clark, Anna, Polanski, Krzysztof, Richoz, Nathan, Ribeiro Orsi, Ana, Mamanova, Lira, Bolt, Liam, Elmentaite, Rasa, Pett, J. Patrick, Huang, Ni, Xu, Chuan, He, Peng, Dabrowska, Monika, Pritchard, Sophie, Tuck, Liz, Prigmore, Elena, Perera, Shani, Knights, Andrew, Oszlanczi, Agnes, Hunter, Adam, Vieira, Sara F., Patel, Minal, Lindeboom, Rik G. H., Campos, Lia S., Matsuo, Kazuhiko, Nakayama, Takashi, Yoshida, Masahiro, Worlock, Kaylee B., Nikolić, Marko Z., Georgakopoulos, Nikitas, Mahbubani, Krishnaa T., Saeb-Parsy, Kourosh, Bayraktar, Omer Ali, Clatworthy, Menna R., Stegle, Oliver, Kumasaka, Natsuhiko, Teichmann, Sarah A., Meyer, Kerstin B.
Published in Nature genetics (01.01.2023)
Published in Nature genetics (01.01.2023)
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Simple Kinetic Models in Molecular Chronobiology
Pett, J Patrick, Westermark, Pål O, Herzel, Hanspeter
Published in Methods in molecular biology (Clifton, N.J.) (2021)
Published in Methods in molecular biology (Clifton, N.J.) (2021)
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Early human lung immune cell development and its role in epithelial cell fate
Barnes, Josephine L, Yoshida, Masahiro, He, Peng, Worlock, Kaylee B, Lindeboom, Rik G H, Suo, Chenqu, Pett, J Patrick, Wilbrey-Clark, Anna, Dann, Emma, Mamanova, Lira, Richardson, Laura, Polanski, Krzysztof, Pennycuick, Adam, Allen-Hyttinen, Jessica, Herczeg, Iván T, Arzili, Romina, Hynds, Robert E, Teixeira, Vitor H, Haniffa, Muzlifah, Lim, Kyungtae, Sun, Dawei, Rawlins, Emma L, Oliver, Amanda J, Lyons, Paul A, Marioni, John C, Ruhrberg, Christiana, Tuong, Zewen Kelvin, Clatworthy, Menna R, Reading, James L, Janes, Sam M, Teichmann, Sarah A, Meyer, Kerstin B, Nikolić, Marko Z
Published in Science immunology (15.12.2023)
Published in Science immunology (15.12.2023)
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Local and systemic responses to SARS-CoV-2 infection in children and adults
Yoshida, Masahiro, Worlock, Kaylee B., Huang, Ni, Lindeboom, Rik G. H., Butler, Colin R., Kumasaka, Natsuhiko, Dominguez Conde, Cecilia, Mamanova, Lira, Bolt, Liam, Richardson, Laura, Polanski, Krzysztof, Madissoon, Elo, Barnes, Josephine L., Allen-Hyttinen, Jessica, Kilich, Eliz, Jones, Brendan C., de Wilton, Angus, Wilbrey-Clark, Anna, Sungnak, Waradon, Pett, J. Patrick, Weller, Juliane, Prigmore, Elena, Yung, Henry, Mehta, Puja, Saleh, Aarash, Saigal, Anita, Chu, Vivian, Cohen, Jonathan M., Cane, Clare, Iordanidou, Aikaterini, Shibuya, Soichi, Reuschl, Ann-Kathrin, Herczeg, Iván T., Argento, A. Christine, Wunderink, Richard G., Smith, Sean B., Poor, Taylor A., Gao, Catherine A., Dematte, Jane E., Reynolds, Gary, Haniffa, Muzlifah, Bowyer, Georgina S., Coates, Matthew, Clatworthy, Menna R., Calero-Nieto, Fernando J., Göttgens, Berthold, O’Callaghan, Christopher, Sebire, Neil J., Jolly, Clare, De Coppi, Paolo, Smith, Claire M., Misharin, Alexander V., Janes, Sam M., Teichmann, Sarah A., Nikolić, Marko Z., Meyer, Kerstin B.
Published in Nature (London) (10.02.2022)
Published in Nature (London) (10.02.2022)
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Journal Article
A spatial multi-omics atlas of the human lung reveals a novel immune cell survival niche
Elo Madissoon, Oliver, Amanda Jane, Kleshchevnikov, Vitalii, Wilbrey-Clark, Anna, Polanski, Krzysztof, Ribeiro Orsi, Ana Elisa, Lira Mamanova, Bolt, Liam, Pett, Jan Patrick, Huang, Ni, Elmentaite, Rasa, Richoz, Nathan, He, Peng, Dabrowska, Monika, Tuck, Elizabeth, Prigmore, Elena, Knights, Andrew, Oszlanczi, Agnes, Hunter, Adam, Pritchard, Sophie, Vieira, Sara Filipa, Patel, Minal, Mahbubani, Krishnaa, Georgakopoulos, Nikitas, Clatworthy, Menna, Stegle, Oliver, Omer Ali Bayraktar, Saeb-Parsy, Kourosh, Kumasaka, Natsuhiko, Teichmann, Sarah Amalia, Meyer, Kerstin B
Published in bioRxiv (27.11.2021)
Published in bioRxiv (27.11.2021)
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Early human lung immune cell development and its role in epithelial cell fate
Barnes, Josephine L, He, Peng, Yoshida, Masahiro, Worlock, Kaylee B, Lindeboom, Rik G H, Suo, Chenqu, Pett, J Patrick, Wilbrey-Clark, Anna, Dann, Emma, Lira Mamanova, Richardson, Laura, Oliver, Amanda J, Pennycuick, Adam L, Allen-Hyttinen, Jessica, Herczeg, Ivan T, Hynds, Robert E, Teixeira, Vitor H, Haniffa, Muzlifah, Lim, Kyungtae, Sun, Dawei, Rawlins, Emma L, Polanski, Krzysztof, Lyons, Paul A, Marioni, John C, Zewen, Kelvin Tuong, Clatworthy, Menna R, Reading, James L, Janes, Sam M, Teichmann, Sarah, Meyer, Kerstin B, Nikolic, Marko Z
Published in bioRxiv (15.12.2022)
Published in bioRxiv (15.12.2022)
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