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Kalvari, Ioanna, Argasinska, Joanna, Quinones-Olvera, Natalia, Nawrocki, Eric P, Rivas, Elena, Eddy, Sean R, Bateman, Alex, Finn, Robert D, Petrov, Anton I
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Rfam 14: expanded coverage of metagenomic, viral and microRNA families
Kalvari, Ioanna, Nawrocki, Eric P, Ontiveros-Palacios, Nancy, Argasinska, Joanna, Lamkiewicz, Kevin, Marz, Manja, Griffiths-Jones, Sam, Toffano-Nioche, Claire, Gautheret, Daniel, Weinberg, Zasha, Rivas, Elena, Eddy, Sean R, Finn, Robert D, Bateman, Alex, Petrov, Anton I
Published in Nucleic Acids Research (08.01.2021)
Published in Nucleic Acids Research (08.01.2021)
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RNAcentral 2021: secondary structure integration, improved sequence search and new member databases
Sweeney, Blake A, Petrov, Anton I, Ribas, Carlos E, Finn, Robert D, Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M, Seemann, Stefan E, Gorodkin, Jan, Cannone, Jamie J, Gutell, Robin R, Kay, Simon, Marygold, Steven, dos Santos, Gil, Frankish, Adam, Mudge, Jonathan M, Barshir, Ruth, Fishilevich, Simon, Chan, Patricia P, Lowe, Todd M, Seal, Ruth, Bruford, Elspeth, Panni, Simona, Porras, Pablo, Karagkouni, Dimitra, Hatzigeorgiou, Artemis G, Ma, Lina, Zhang, Zhang, Volders, Pieter-Jan, Mestdagh, Pieter, Griffiths-Jones, Sam, Fromm, Bastian, Peterson, Kevin J, Kalvari, Ioanna, Nawrocki, Eric P, Petrov, Anton S, Weng, Shuai, Bouchard-Bourelle, Philia, Scott, Michelle, Lui, Lauren M, Hoksza, David, Lovering, Ruth C, Kramarz, Barbara, Mani, Prita, Ramachandran, Sridhar, Weinberg, Zasha
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
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Non-Coding RNA Analysis Using the Rfam Database
Kalvari, Ioanna, Nawrocki, Eric P, Argasinska, Joanna, Quinones-Olvera, Natalia, Finn, Robert D, Bateman, Alex, Petrov, Anton I
Published in Current protocols in bioinformatics (01.06.2018)
Published in Current protocols in bioinformatics (01.06.2018)
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R2DT is a framework for predicting and visualising RNA secondary structure using templates
Sweeney, Blake A., Hoksza, David, Nawrocki, Eric P., Ribas, Carlos Eduardo, Madeira, Fábio, Cannone, Jamie J., Gutell, Robin, Maddala, Aparna, Meade, Caeden D., Williams, Loren Dean, Petrov, Anton S., Chan, Patricia P., Lowe, Todd M., Finn, Robert D., Petrov, Anton I.
Published in Nature communications (09.06.2021)
Published in Nature communications (09.06.2021)
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The Nucleic Acid Database: new features and capabilities
Coimbatore Narayanan, Buvaneswari, Westbrook, John, Ghosh, Saheli, Petrov, Anton I, Sweeney, Blake, Zirbel, Craig L, Leontis, Neocles B, Berman, Helen M
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Comprehensive survey of conserved RNA secondary structures in full-genome alignment of Hepatitis C virus
Triebel, Sandra, Lamkiewicz, Kevin, Ontiveros, Nancy, Sweeney, Blake, Stadler, Peter F., Petrov, Anton I., Niepmann, Michael, Marz, Manja
Published in Scientific reports (02.07.2024)
Published in Scientific reports (02.07.2024)
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RNAcentral: an international database of ncRNA sequences
Petrov, Anton I, Kay, Simon J E, Gibson, Richard, Kulesha, Eugene, Staines, Dan, Bruford, Elspeth A, Wright, Mathew W, Burge, Sarah, Finn, Robert D, Kersey, Paul J, Cochrane, Guy, Bateman, Alex, Griffiths-Jones, Sam, Harrow, Jennifer, Chan, Patricia P, Lowe, Todd M, Zwieb, Christian W, Wower, Jacek, Williams, Kelly P, Hudson, Corey M, Gutell, Robin, Clark, Michael B, Dinger, Marcel, Quek, Xiu Cheng, Bujnicki, Janusz M, Chua, Nam-Hai, Liu, Jun, Wang, Huan, Skogerbø, Geir, Zhao, Yi, Chen, Runsheng, Zhu, Weimin, Cole, James R, Chai, Benli, Huang, Hsien-Da, Huang, His-Yuan, Cherry, J Michael, Hatzigeorgiou, Artemis, Pruitt, Kim D
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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The European Bioinformatics Institute (EMBL-EBI) in 2021
Cantelli, Gaia, Bateman, Alex, Brooksbank, Cath, Petrov, Anton I, Malik-Sheriff, Rahuman S, Ide-Smith, Michele, Hermjakob, Henning, Flicek, Paul, Apweiler, Rolf, Birney, Ewan, McEntyre, Johanna
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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RNAcentral: a hub of information for non-coding RNA sequences
Sweeney, Blake A, Petrov, Anton I, Burkov, Boris, Finn, Robert D, Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M, Gorodkin, Jan, Seemann, Stefan E, Cannone, Jamie J, Gutell, Robin R, Fey, Petra, Basu, Siddhartha, Kay, Simon, Cochrane, Guy, Billis, Kostantinos, Emmert, David, Marygold, Steven J, Huntley, Rachael P, Lovering, Ruth C, Frankish, Adam, Chan, Patricia P, Lowe, Todd M, Bruford, Elspeth, Seal, Ruth, Vandesompele, Jo, Volders, Pieter-Jan, Paraskevopoulou, Maria, Ma, Lina, Zhang, Zhang, Griffiths-Jones, Sam, Bujnicki, Janusz M, Boccaletto, Pietro, Blake, Judith A, Bult, Carol J, Chen, Runsheng, Zhao, Yi, Wood, Valerie, Rutherford, Kim, Rivas, Elena, Cole, James, Laulederkind, Stanley J F, Shimoyama, Mary, Gillespie, Marc E, Orlic-Milacic, Marija, Kalvari, Ioanna, Nawrocki, Eric, Engel, Stacia R, Cherry, J Michael, Team, SILVA, Berardini, Tanya Z, Hatzigeorgiou, Artemis, Karagkouni, Dimitra, Howe, Kevin, Davis, Paul, Dinger, Marcel, He, Shunmin, Yoshihama, Maki, Kenmochi, Naoya, Stadler, Peter F, Williams, Kelly P
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
Hufsky, Franziska, Lamkiewicz, Kevin, Almeida, Alexandre, Aouacheria, Abdel, Arighi, Cecilia, Bateman, Alex, Baumbach, Jan, Beerenwinkel, Niko, Brandt, Christian, Cacciabue, Marco, Chuguransky, Sara, Drechsel, Oliver, Finn, Robert D, Fritz, Adrian, Fuchs, Stephan, Hattab, Georges, Hauschild, Anne-Christin, Heider, Dominik, Hoffmann, Marie, Hölzer, Martin, Hoops, Stefan, Kaderali, Lars, Kalvari, Ioanna, von Kleist, Max, Kmiecinski, Renó, Kühnert, Denise, Lasso, Gorka, Libin, Pieter, List, Markus, Löchel, Hannah F, Martin, Maria J, Martin, Roman, Matschinske, Julian, McHardy, Alice C, Mendes, Pedro, Mistry, Jaina, Navratil, Vincent, Nawrocki, Eric P, O’Toole, Áine Niamh, Ontiveros-Palacios, Nancy, Petrov, Anton I, Rangel-Pineros, Guillermo, Redaschi, Nicole, Reimering, Susanne, Reinert, Knut, Reyes, Alejandro, Richardson, Lorna, Robertson, David L, Sadegh, Sepideh, Singer, Joshua B, Theys, Kristof, Upton, Chris, Welzel, Marius, Williams, Lowri, Marz, Manja
Published in Briefings in Bioinformatics (04.11.2020)
Published in Briefings in Bioinformatics (04.11.2020)
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Book Review
RNAcentral: a comprehensive database of non-coding RNA sequences
Petrov, Anton I, Kay, Simon J E, Kalvari, Ioanna, Howe, Kevin L, Gray, Kristian A, Bruford, Elspeth A, Kersey, Paul J, Cochrane, Guy, Finn, Robert D, Bateman, Alex, Kozomara, Ana, Griffiths-Jones, Sam, Frankish, Adam, Zwieb, Christian W, Lau, Britney Y, Williams, Kelly P, Chan, Patricia P, Lowe, Todd M, Cannone, Jamie J, Gutell, Robin, Machnicka, Magdalena A, Bujnicki, Janusz M, Yoshihama, Maki, Kenmochi, Naoya, Chai, Benli, Cole, James R, Szymanski, Maciej, Karlowski, Wojciech M, Wood, Valerie, Huala, Eva, Berardini, Tanya Z, Zhao, Yi, Chen, Runsheng, Zhu, Weimin, Paraskevopoulou, Maria D, Vlachos, Ioannis S, Hatzigeorgiou, Artemis G, Ma, Lina, Zhang, Zhang, Puetz, Joern, Stadler, Peter F, McDonald, Daniel, Basu, Siddhartha, Fey, Petra, Engel, Stacia R, Cherry, J Michael, Volders, Pieter-Jan, Mestdagh, Pieter, Wower, Jacek, Clark, Michael B, Quek, Xiu Cheng, Dinger, Marcel E
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Identifying novel sequence variants of RNA 3D motifs
Zirbel, Craig L, Roll, James, Sweeney, Blake A, Petrov, Anton I, Pirrung, Meg, Leontis, Neocles B
Published in Nucleic acids research (03.09.2015)
Published in Nucleic acids research (03.09.2015)
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Comprehensive survey and geometric classification of base triples in RNA structures
Abu Almakarem, Amal S, Petrov, Anton I, Stombaugh, Jesse, Zirbel, Craig L, Leontis, Neocles B
Published in Nucleic acids research (01.02.2012)
Published in Nucleic acids research (01.02.2012)
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JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs
Roll, James, Zirbel, Craig L, Sweeney, Blake, Petrov, Anton I, Leontis, Neocles
Published in Nucleic acids research (08.07.2016)
Published in Nucleic acids research (08.07.2016)
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WebFR3D-a server for finding, aligning and analyzing recurrent RNA 3D motifs
Petrov, Anton I., Zirbel, Craig L., Leontis, Neocles B.
Published in Nucleic acids research (01.07.2011)
Published in Nucleic acids research (01.07.2011)
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Exploring Non‐Coding RNAs in RNAcentral
Sweeney, Blake A., Tagmazian, Arina A., Ribas, Carlos E., Finn, Robert D., Bateman, Alex, Petrov, Anton I.
Published in Current Protocols in Bioinformatics (01.09.2020)
Published in Current Protocols in Bioinformatics (01.09.2020)
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