NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data
Reynisson, Birkir, Alvarez, Bruno, Paul, Sinu, Peters, Bjoern, Nielsen, Morten
Published in Nucleic acids research (02.07.2020)
Published in Nucleic acids research (02.07.2020)
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BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes
Jespersen, Martin Closter, Peters, Bjoern, Nielsen, Morten, Marcatili, Paolo
Published in Nucleic acids research (03.07.2017)
Published in Nucleic acids research (03.07.2017)
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A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2
Grifoni, Alba, Sidney, John, Zhang, Yun, Scheuermann, Richard H., Peters, Bjoern, Sette, Alessandro
Published in Cell Host & Microbe (08.04.2020)
Published in Cell Host & Microbe (08.04.2020)
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NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data
Jurtz, Vanessa, Paul, Sinu, Andreatta, Massimo, Marcatili, Paolo, Peters, Bjoern, Nielsen, Morten
Published in The Journal of immunology (1950) (01.11.2017)
Published in The Journal of immunology (1950) (01.11.2017)
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Improved Prediction of MHC II Antigen Presentation through Integration and Motif Deconvolution of Mass Spectrometry MHC Eluted Ligand Data
Reynisson, Birkir, Barra, Carolina, Kaabinejadian, Saghar, Hildebrand, William H, Peters, Bjoern, Nielsen, Morten
Published in Journal of proteome research (05.06.2020)
Published in Journal of proteome research (05.06.2020)
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Immunological memory to SARS-CoV-2 assessed for up to 8 months after infection
Dan, Jennifer M, Mateus, Jose, Kato, Yu, Hastie, Kathryn M, Yu, Esther Dawen, Faliti, Caterina E, Grifoni, Alba, Ramirez, Sydney I, Haupt, Sonya, Frazier, April, Nakao, Catherine, Rayaprolu, Vamseedhar, Rawlings, Stephen A, Peters, Bjoern, Krammer, Florian, Simon, Viviana, Saphire, Erica Ollmann, Smith, Davey M, Weiskopf, Daniela, Sette, Alessandro, Crotty, Shane
Published in Science (05.02.2021)
Published in Science (05.02.2021)
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Peptide binding predictions for HLA DR, DP and DQ molecules
Wang, Peng, Sidney, John, Kim, Yohan, Sette, Alessandro, Lund, Ole, Nielsen, Morten, Peters, Bjoern
Published in BMC bioinformatics (22.11.2010)
Published in BMC bioinformatics (22.11.2010)
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ElliPro: a new structure-based tool for the prediction of antibody epitopes
Ponomarenko, Julia, Bui, Huynh-Hoa, Li, Wei, Fusseder, Nicholas, Bourne, Philip E, Sette, Alessandro, Peters, Bjoern
Published in BMC bioinformatics (02.12.2008)
Published in BMC bioinformatics (02.12.2008)
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Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression
Schmiedel, Benjamin J., Singh, Divya, Madrigal, Ariel, Valdovino-Gonzalez, Alan G., White, Brandie M., Zapardiel-Gonzalo, Jose, Ha, Brendan, Altay, Gokmen, Greenbaum, Jason A., McVicker, Graham, Seumois, Grégory, Rao, Anjana, Kronenberg, Mitchell, Peters, Bjoern, Vijayanand, Pandurangan
Published in Cell (29.11.2018)
Published in Cell (29.11.2018)
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Properties of MHC class I presented peptides that enhance immunogenicity
Calis, Jorg J A, Maybeno, Matt, Greenbaum, Jason A, Weiskopf, Daniela, De Silva, Aruna D, Sette, Alessandro, Keşmir, Can, Peters, Bjoern
Published in PLoS computational biology (01.10.2013)
Published in PLoS computational biology (01.10.2013)
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α-Synuclein-specific T cell reactivity is associated with preclinical and early Parkinson's disease
Lindestam Arlehamn, Cecilia S, Dhanwani, Rekha, Pham, John, Kuan, Rebecca, Frazier, April, Rezende Dutra, Juliana, Phillips, Elizabeth, Mallal, Simon, Roederer, Mario, Marder, Karen S, Amara, Amy W, Standaert, David G, Goldman, Jennifer G, Litvan, Irene, Peters, Bjoern, Sulzer, David, Sette, Alessandro
Published in Nature communications (20.04.2020)
Published in Nature communications (20.04.2020)
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Dengue virus infection elicits highly polarized CX3CR1⁺ cytotoxic CD4⁺ T cells associated with protective immunity
Weiskopf, Daniela, Bangs, Derek J., Sidney, John, Kolla, Ravi V., De Silva, Aruna D., de Silva, Aravinda M., Crotty, Shane, Peters, Bjoern, Sette, Alessandro
Published in Proceedings of the National Academy of Sciences - PNAS (04.08.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (04.08.2015)
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Defining variant-resistant epitopes targeted by SARS-CoV-2 antibodies: A global consortium study
Hastie, Kathryn M, Li, Haoyang, Bedinger, Daniel, Schendel, Sharon L, Dennison, S Moses, Li, Kan, Rayaprolu, Vamseedhar, Yu, Xiaoying, Mann, Colin, Zandonatti, Michelle, Diaz Avalos, Ruben, Zyla, Dawid, Buck, Tierra, Hui, Sean, Shaffer, Kelly, Hariharan, Chitra, Yin, Jieyun, Olmedillas, Eduardo, Enriquez, Adrian, Parekh, Diptiben, Abraha, Milite, Feeney, Elizabeth, Horn, Gillian Q, Aldon, Yoann, Ali, Hanif, Aracic, Sanja, Cobb, Ronald R, Federman, Ross S, Fernandez, Joseph M, Glanville, Jacob, Green, Robin, Grigoryan, Gevorg, Lujan Hernandez, Ana G, Ho, David D, Huang, Kuan-Ying A, Ingraham, John, Jiang, Weidong, Kellam, Paul, Kim, Cheolmin, Kim, Minsoo, Kim, Hyeong Mi, Kong, Chao, Krebs, Shelly J, Lan, Fei, Lang, Guojun, Lee, Sooyoung, Leung, Cheuk Lun, Liu, Junli, Lu, Yanan, MacCamy, Anna, McGuire, Andrew T, Palser, Anne L, Rabbitts, Terence H, Rikhtegaran Tehrani, Zahra, Sajadi, Mohammad M, Sanders, Rogier W, Sato, Aaron K, Schweizer, Liang, Seo, Jimin, Shen, Bingqing, Snitselaar, Jonne L, Stamatatos, Leonidas, Tan, Yongcong, Tomic, Milan T, van Gils, Marit J, Youssef, Sawsan, Yu, Jian, Yuan, Tom Z, Zhang, Qian, Peters, Bjoern, Tomaras, Georgia D, Germann, Timothy, Saphire, Erica Ollmann
Published in Science (American Association for the Advancement of Science) (22.10.2021)
Published in Science (American Association for the Advancement of Science) (22.10.2021)
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An automated benchmarking platform for MHC class II binding prediction methods
Andreatta, Massimo, Trolle, Thomas, Yan, Zhen, Greenbaum, Jason A, Peters, Bjoern, Nielsen, Morten
Published in Bioinformatics (01.05.2018)
Published in Bioinformatics (01.05.2018)
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Promoter-interacting expression quantitative trait loci are enriched for functional genetic variants
Chandra, Vivek, Bhattacharyya, Sourya, Schmiedel, Benjamin J, Madrigal, Ariel, Gonzalez-Colin, Cristian, Fotsing, Stephanie, Crinklaw, Austin, Seumois, Gregory, Mohammadi, Pejman, Kronenberg, Mitchell, Peters, Bjoern, Ay, Ferhat, Vijayanand, Pandurangan
Published in Nature genetics (01.01.2021)
Published in Nature genetics (01.01.2021)
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