A practical guide to cancer subclonal reconstruction from DNA sequencing
Tarabichi, Maxime, Salcedo, Adriana, Deshwar, Amit G, Ni Leathlobhair, Máire, Wintersinger, Jeff, Wedge, David C, Van Loo, Peter, Morris, Quaid D, Boutros, Paul C
Published in Nature methods (01.02.2021)
Published in Nature methods (01.02.2021)
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An integrative analysis of the age-associated multi-omic landscape across cancers
Chatsirisupachai, Kasit, Lesluyes, Tom, Paraoan, Luminita, Van Loo, Peter, de Magalhães, João Pedro
Published in Nature communications (20.04.2021)
Published in Nature communications (20.04.2021)
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Copynumber: Efficient algorithms for single- and multi-track copy number segmentation
Nilsen, Gro, Liestøl, Knut, Van Loo, Peter, Moen Vollan, Hans Kristian, Eide, Marianne B, Rueda, Oscar M, Chin, Suet-Feung, Russell, Roslin, Baumbusch, Lars O, Caldas, Carlos, Børresen-Dale, Anne-Lise, Lingjaerde, Ole Christian
Published in BMC genomics (04.11.2012)
Published in BMC genomics (04.11.2012)
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Ethanol exposure increases mutation rate through error-prone polymerases
Voordeckers, Karin, Colding, Camilla, Grasso, Lavinia, Pardo, Benjamin, Hoes, Lore, Kominek, Jacek, Gielens, Kim, Dekoster, Kaat, Gordon, Jonathan, Van der Zande, Elisa, Bircham, Peter, Swings, Toon, Michiels, Jan, Van Loo, Peter, Nuyts, Sandra, Pasero, Philippe, Lisby, Michael, Verstrepen, Kevin J.
Published in Nature communications (21.07.2020)
Published in Nature communications (21.07.2020)
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Diagnostic value of H3F3A mutations in giant cell tumour of bone compared to osteoclast‐rich mimics
Presneau, Nadège, Baumhoer, Daniel, Behjati, Sam, Pillay, Nischalan, Tarpey, Patrick, Campbell, Peter J, Jundt, Gernot, Hamoudi, Rifat, Wedge, David C, Loo, Peter Van, Hassan, A Bassim, Khatri, Bhavisha, Ye, Hongtao, Tirabosco, Roberto, Amary, M Fernanda, Flanagan, Adrienne M
Published in The journal of pathology. Clinical research (01.04.2015)
Published in The journal of pathology. Clinical research (01.04.2015)
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A genetic model for central chondrosarcoma evolution correlates with patient outcome
Cross, William, Lyskjær, Iben, Lesluyes, Tom, Hargreaves, Steven, Strobl, Anna-Christina, Davies, Christopher, Waise, Sara, Hames-Fathi, Shadi, Oukrif, Dahmane, Ye, Hongtao, Amary, Fernanda, Tirabosco, Roberto, Gerrand, Craig, Baker, Toby, Barnes, David, Steele, Christopher, Alexandrov, Ludmil, Bond, Gareth, Cool, Paul, Pillay, Nischalan, Van Loo, Peter, Flanagan, Adrienne M
Published in Genome medicine (30.08.2022)
Published in Genome medicine (30.08.2022)
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Canine Mammary Tumours Are Affected by Frequent Copy Number Aberrations, including Amplification of MYC and Loss of PTEN
Borge, Kaja S, Nord, Silje, Van Loo, Peter, Lingjærde, Ole C, Gunnes, Gjermund, Alnæs, Grethe I G, Solvang, Hiroko K, Lüders, Torben, Kristensen, Vessela N, Børresen-Dale, Anne-Lise, Lingaas, Frode
Published in PloS one (08.05.2015)
Published in PloS one (08.05.2015)
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Direct Transcriptional Consequences of Somatic Mutation in Breast Cancer
Shlien, Adam, Raine, Keiran, Fuligni, Fabio, Arnold, Roland, Nik-Zainal, Serena, Dronov, Serge, Mamanova, Lira, Rosic, Andrej, Ju, Young Seok, Cooke, Susanna L., Ramakrishna, Manasa, Papaemmanuil, Elli, Davies, Helen R., Tarpey, Patrick S., Van Loo, Peter, Wedge, David C., Jones, David R., Martin, Sancha, Marshall, John, Anderson, Elizabeth, Hardy, Claire, Barbashina, Violetta, Aparicio, Samuel A.J.R., Sauer, Torill, Garred, Øystein, Vincent-Salomon, Anne, Mariani, Odette, Boyault, Sandrine, Fatima, Aquila, Langerød, Anita, Borg, Åke, Thomas, Gilles, Richardson, Andrea L., Børresen-Dale, Anne-Lise, Polyak, Kornelia, Stratton, Michael R., Campbell, Peter J.
Published in Cell reports (Cambridge) (16.08.2016)
Published in Cell reports (Cambridge) (16.08.2016)
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Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors
Cheng, Jiqiu, Demeulemeester, Jonas, Wedge, David C, Vollan, Hans Kristian M, Pitt, Jason J, Russnes, Hege G, Pandey, Bina P, Nilsen, Gro, Nord, Silje, Bignell, Graham R, White, Kevin P, Børresen-Dale, Anne-Lise, Campbell, Peter J, Kristensen, Vessela N, Stratton, Michael R, Lingjærde, Ole Christian, Moreau, Yves, Van Loo, Peter
Published in Nature communications (28.01.2019)
Published in Nature communications (28.01.2019)
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Universal Patterns of Selection in Cancer and Somatic Tissues
Martincorena, Iñigo, Raine, Keiran M., Gerstung, Moritz, Dawson, Kevin J., Haase, Kerstin, Van Loo, Peter, Davies, Helen, Stratton, Michael R., Campbell, Peter J.
Published in Cell (16.11.2017)
Published in Cell (16.11.2017)
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The 5p12 breast cancer susceptibility locus affects MRPS30 expression in estrogen-receptor positive tumors
Quigley, David A., Fiorito, Elisa, Nord, Silje, Van Loo, Peter, Alnæs, Grethe Grenaker, Fleischer, Thomas, Tost, Jorg, Moen Vollan, Hans Kristian, Tramm, Trine, Overgaard, Jens, Bukholm, Ida R., Hurtado, Antoni, Balmain, Allan, Børresen-Dale, Anne-Lise, Kristensen, Vessela
Published in Molecular oncology (01.03.2014)
Published in Molecular oncology (01.03.2014)
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Mutational signatures associated with tobacco smoking in human cancer
Alexandrov, Ludmil B., Ju, Young Seok, Haase, Kerstin, Van Loo, Peter, Martincorena, Iñigo, Nik-Zainal, Serena, Totoki, Yasushi, Fujimoto, Akihiro, Nakagawa, Hidewaki, Shibata, Tatsuhiro, Campbell, Peter J., Vineis, Paolo, Phillips, David H., Stratton, Michael R.
Published in Science (American Association for the Advancement of Science) (04.11.2016)
Published in Science (American Association for the Advancement of Science) (04.11.2016)
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Genomic Classification and Prognosis in Acute Myeloid Leukemia
Papaemmanuil, Elli, Gerstung, Moritz, Bullinger, Lars, Gaidzik, Verena I, Paschka, Peter, Roberts, Nicola D, Potter, Nicola E, Heuser, Michael, Thol, Felicitas, Bolli, Niccolo, Gundem, Gunes, Van Loo, Peter, Martincorena, Inigo, Ganly, Peter, Mudie, Laura, McLaren, Stuart, O’Meara, Sarah, Raine, Keiran, Jones, David R, Teague, Jon W, Butler, Adam P, Greaves, Mel F, Ganser, Arnold, Döhner, Konstanze, Schlenk, Richard F, Döhner, Hartmut, Campbell, Peter J
Published in The New England journal of medicine (09.06.2016)
Published in The New England journal of medicine (09.06.2016)
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High burden and pervasive positive selection of somatic mutations in normal human skin
Martincorena, Iñigo, Roshan, Amit, Gerstung, Moritz, Ellis, Peter, Van Loo, Peter, McLaren, Stuart, Wedge, David C., Fullam, Anthony, Alexandrov, Ludmil B., Tubio, Jose M., Stebbings, Lucy, Menzies, Andrew, Widaa, Sara, Stratton, Michael R., Jones, Philip H., Campbell, Peter J.
Published in Science (American Association for the Advancement of Science) (22.05.2015)
Published in Science (American Association for the Advancement of Science) (22.05.2015)
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Signatures of copy number alterations in human cancer
Steele, Christopher D, Abbasi, Ammal, Islam, S M Ashiqul, Bowes, Amy L, Khandekar, Azhar, Haase, Kerstin, Hames-Fathi, Shadi, Ajayi, Dolapo, Verfaillie, Annelien, Dhami, Pawan, McLatchie, Alex, Lechner, Matt, Light, Nicholas, Shlien, Adam, Malkin, David, Feber, Andrew, Proszek, Paula, Lesluyes, Tom, Mertens, Fredrik, Flanagan, Adrienne M, Tarabichi, Maxime, Van Loo, Peter, Alexandrov, Ludmil B, Pillay, Nischalan
Published in Nature (London) (30.06.2022)
Published in Nature (London) (30.06.2022)
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