Global Trends in Marine Plankton Diversity across Kingdoms of Life
Ibarbalz, Federico M., Henry, Nicolas, Brandão, Manoela C., Martini, Séverine, Busseni, Greta, Byrne, Hannah, Coelho, Luis Pedro, Endo, Hisashi, Gasol, Josep M., Gregory, Ann C., Mahé, Frédéric, Rigonato, Janaina, Royo-Llonch, Marta, Salazar, Guillem, Sanz-Sáez, Isabel, Scalco, Eleonora, Soviadan, Dodji, Zayed, Ahmed A., Zingone, Adriana, Labadie, Karine, Ferland, Joannie, Marec, Claudie, Kandels, Stefanie, Picheral, Marc, Dimier, Céline, Poulain, Julie, Pisarev, Sergey, Carmichael, Margaux, Pesant, Stéphane, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Follows, Mick, Gorsky, Gabriel, Grimsley, Nigel, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stéphane, Poulton, Nicole, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Wincker, Patrick, Babin, Marcel, Boss, Emmanuel, Iudicone, Daniele, Jaillon, Olivier, Acinas, Silvia G., Ogata, Hiroyuki, Pelletier, Eric, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Bopp, Laurent, de Vargas, Colomban, Karp-Boss, Lee, Wincker, Patrick, Lombard, Fabien, Bowler, Chris, Zinger, Lucie
Published in Cell (14.11.2019)
Published in Cell (14.11.2019)
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Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
Roux, Simon, Brum, Jennifer R., Dutilh, Bas E., Sunagawa, Shinichi, Duhaime, Melissa B., Loy, Alexander, Poulos, Bonnie T., Solonenko, Natalie, Lara, Elena, Poulain, Julie, Pesant, Stéphane, Kandels-Lewis, Stefanie, Dimier, Céline, Picheral, Marc, Searson, Sarah, Cruaud, Corinne, Alberti, Adriana, Duarte, Carlos M., Gasol, Josep M., Vaqué, Dolors, Bork, Peer, Acinas, Silvia G., Wincker, Patrick, Sullivan, Matthew B.
Published in Nature (London) (29.09.2016)
Published in Nature (London) (29.09.2016)
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Patterns and ecological drivers of ocean viral communities
Brum, J. R., Ignacio-Espinoza, J. C., Doulcier, S. Roux G., Acinas, S. G., Alberti, A., Chaffron, S., Cruaud, C., de Vargas, C., Gasol, J. M., Gorsky, G., Gregory, A. C., Guidi, L., Hingamp, P., Iudicone, D., Not, F., Ogata, H., Pesant, S., Poulos, B. T., Schwenck, S. M., Speich, S., Dimier, C., Kandels-Lewis, S., Picheral, M., Searson, S., Bork, P., Bowler, C., Sunagawa, S., Wincker, P., Karsenti, E., Sullivan, M. B.
Published in Science (American Association for the Advancement of Science) (22.05.2015)
Published in Science (American Association for the Advancement of Science) (22.05.2015)
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The European Nucleotide Archive in 2021
Cummins, Carla, Ahamed, Alisha, Aslam, Raheela, Burgin, Josephine, Devraj, Rajkumar, Edbali, Ossama, Gupta, Dipayan, Harrison, Peter W, Haseeb, Muhammad, Holt, Sam, Ibrahim, Talal, Ivanov, Eugene, Jayathilaka, Suran, Kadhirvelu, Vishnukumar, Kay, Simon, Kumar, Manish, Lathi, Ankur, Leinonen, Rasko, Madeira, Fabio, Madhusoodanan, Nandana, Mansurova, Milena, O’Cathail, Colman, Pearce, Matt, Pesant, Stéphane, Rahman, Nadim, Rajan, Jeena, Rinck, Gabriele, Selvakumar, Sandeep, Sokolov, Alexey, Suman, Swati, Thorne, Ross, Totoo, Prabhat, Vijayaraja, Senthilnathan, Waheed, Zahra, Zyoud, Ahmad, Lopez, Rodrigo, Burdett, Tony, Cochrane, Guy
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Marine DNA Viral Macro- and Microdiversity from Pole to Pole
Gregory, Ann C., Zayed, Ahmed A., Conceição-Neto, Nádia, Temperton, Ben, Bolduc, Ben, Alberti, Adriana, Ardyna, Mathieu, Arkhipova, Ksenia, Carmichael, Margaux, Cruaud, Corinne, Dimier, Céline, Domínguez-Huerta, Guillermo, Ferland, Joannie, Kandels, Stefanie, Liu, Yunxiao, Marec, Claudie, Pesant, Stéphane, Picheral, Marc, Pisarev, Sergey, Poulain, Julie, Tremblay, Jean-Éric, Vik, Dean, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Follows, Michael, Gorsky, Gabriel, Grimsley, Nigel, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels-Lewis, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stéphane, Poulton, Nicole, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Wincker, Patrick, Babin, Marcel, Bowler, Chris, Culley, Alexander I., de Vargas, Colomban, Dutilh, Bas E., Iudicone, Daniele, Karp-Boss, Lee, Roux, Simon, Sunagawa, Shinichi, Wincker, Patrick, Sullivan, Matthew B.
Published in Cell (16.05.2019)
Published in Cell (16.05.2019)
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Tara Oceans: towards global ocean ecosystems biology
Sunagawa, Shinichi, Acinas, Silvia G., Bork, Peer, Bowler, Chris, Eveillard, Damien, Gorsky, Gabriel, Guidi, Lionel, Iudicone, Daniele, Karsenti, Eric, Lombard, Fabien, Ogata, Hiroyuki, Pesant, Stephane, Sullivan, Matthew B., Wincker, Patrick, de Vargas, Colomban
Published in Nature reviews. Microbiology (01.08.2020)
Published in Nature reviews. Microbiology (01.08.2020)
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Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
Salazar, Guillem, Paoli, Lucas, Alberti, Adriana, Huerta-Cepas, Jaime, Ruscheweyh, Hans-Joachim, Cuenca, Miguelangel, Field, Christopher M., Coelho, Luis Pedro, Cruaud, Corinne, Engelen, Stefan, Gregory, Ann C., Labadie, Karine, Marec, Claudie, Pelletier, Eric, Royo-Llonch, Marta, Roux, Simon, Sánchez, Pablo, Uehara, Hideya, Zayed, Ahmed A., Zeller, Georg, Carmichael, Margaux, Dimier, Céline, Ferland, Joannie, Kandels, Stefanie, Picheral, Marc, Pisarev, Sergey, Poulain, Julie, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Follows, Michael, Gorsky, Gabriel, Grimsley, Nigel, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels-Lewis, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stephane, Poulton, Nicole, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Wincker, Patrick, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Bowler, Chris, de Vargas, Colomban, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Karp-Boss, Lee, Karsenti, Eric, Ogata, Hiroyuki, Pesant, Stephane, Speich, Sabrina, Sullivan, Matthew B., Wincker, Patrick, Sunagawa, Shinichi
Published in Cell (14.11.2019)
Published in Cell (14.11.2019)
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Eukaryotic plankton diversity in the sunlit ocean
de Vargas, C., Audic, S., Henry, N., Decelle, J., Mahé, F., Logares, R., Lara, E., Berney, C., Le Bescot, N., Probert, I., Carmichael, M., Poulain, J., Romac, S., Colin, S., Aury, J.-M., Bittner, L., Chaffron, S., Dunthorn, M., Engelen, S., Flegontova, O., Guidi, L., Horák, A., Jaillon, O., Lima-Mendez, G., Lukeš, J., Malviya, S., Morard, R., Mulot, M., Scalco, E., Siano, R., Vincent, F., Zingone, A., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Acinas, S. G., Bork, P., Bowler, C., Gorsky, G., Grimsley, N., Hingamp, P., Iudicone, D., Not, F., Ogata, H., Pesant, S., Raes, J., Sieracki, M. E., Speich, S., Stemmann, L., Sunagawa, S., Weissenbach, J., Wincker, P., Karsenti, E.
Published in Science (American Association for the Advancement of Science) (22.05.2015)
Published in Science (American Association for the Advancement of Science) (22.05.2015)
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Environmental characteristics of Agulhas rings affect interocean plankton transport
Villar, Emilie, Farrant, Gregory K., Follows, Michael, Garczarek, Laurence, Speich, Sabrina, Audic, Stéphane, Bittner, Lucie, Blanke, Bruno, Brum, Jennifer R., Brunet, Christophe, Casotti, Raffaella, Chase, Alison, Dolan, John R., d’Ortenzio, Fabrizio, Gattuso, Jean-Pierre, Grima, Nicolas, Guidi, Lionel, Hill, Christopher N., Jahn, Oliver, Jamet, Jean-Louis, Le Goff, Hervé, Lepoivre, Cyrille, Malviya, Shruti, Pelletier, Eric, Romagnan, Jean-Baptiste, Roux, Simon, Santini, Sébastien, Scalco, Eleonora, Schwenck, Sarah M., Tanaka, Atsuko, Testor, Pierre, Vannier, Thomas, Vincent, Flora, Zingone, Adriana, Dimier, Céline, Picheral, Marc, Searson, Sarah, Kandels-Lewis, Stefanie, Acinas, Silvia G., Bork, Peer, Boss, Emmanuel, de Vargas, Colomban, Gorsky, Gabriel, Ogata, Hiroyuki, Pesant, Stéphane, Sullivan, Matthew B., Sunagawa, Shinichi, Wincker, Patrick, Karsenti, Eric, Bowler, Chris, Not, Fabrice, Hingamp, Pascal, Iudicone, Daniele
Published in Science (American Association for the Advancement of Science) (22.05.2015)
Published in Science (American Association for the Advancement of Science) (22.05.2015)
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Biogeography and diversity of Collodaria (Radiolaria) in the global ocean
Biard, Tristan, Bigeard, Estelle, Audic, Stéphane, Poulain, Julie, Gutierrez-Rodriguez, Andres, Pesant, Stéphane, Stemmann, Lars, Not, Fabrice
Published in The ISME Journal (01.06.2017)
Published in The ISME Journal (01.06.2017)
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Determinants of community structure in the global plankton interactome
Lima-Mendez, G., Faust, K., Henry, N., Decelle, J., Colin, S., Carcillo, F., Chaffron, S., Ignacio-Espinosa, J. C., Roux, S., Vincent, F., Bittner, L., Darzi, Y., Wang, J., Audic, S., Berline, L., Bontempi, G., Cabello, A. M., Coppola, L., Cornejo-Castillo, F. M., d'Ovidio, F., De Meester, L., Ferrera, I., Garet-Delmas, M.-J., Guidi, L., Lara, E., Pesant, S., Royo-Llonch, M., Salazar, G., Sànchez, P., Sebastian, M., Souffreau, C., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Gorsky, G., Not, F., Ogata, H., Speich, S., Stemmann, L., Weissenbach, J., Wincker, P., Acinas, S. G., Sunagawa, S., Bork, P., Sullivan, M. B., Karsenti, E., Bowler, C., de Vargas, C., Raes, J.
Published in Science (American Association for the Advancement of Science) (22.05.2015)
Published in Science (American Association for the Advancement of Science) (22.05.2015)
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The European Nucleotide Archive in 2022
Burgin, Josephine, Ahamed, Alisha, Cummins, Carla, Devraj, Rajkumar, Gueye, Khadim, Gupta, Dipayan, Gupta, Vikas, Haseeb, Muhammad, Ihsan, Maira, Ivanov, Eugene, Jayathilaka, Suran, Balavenkataraman Kadhirvelu, Vishnukumar, Kumar, Manish, Lathi, Ankur, Leinonen, Rasko, Mansurova, Milena, McKinnon, Jasmine, O'Cathail, Colman, Paupério, Joana, Pesant, Stéphane, Rahman, Nadim, Rinck, Gabriele, Selvakumar, Sandeep, Suman, Swati, Vijayaraja, Senthilnathan, Waheed, Zahra, Woollard, Peter, Yuan, David, Zyoud, Ahmad, Burdett, Tony, Cochrane, Guy
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
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A holistic approach to marine eco-systems biology
Karsenti, Eric, Acinas, Silvia G, Bork, Peer, Bowler, Chris, De Vargas, Colomban, Raes, Jeroen, Sullivan, Matthew, Arendt, Detlev, Benzoni, Francesca, Claverie, Jean-Michel, Follows, Mick, Gorsky, Gaby, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels-Lewis, Stefanie, Krzic, Uros, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stéphane, Reynaud, Emmanuel Georges, Sardet, Christian, Sieracki, Michael E, Speich, Sabrina, Velayoudon, Didier, Weissenbach, Jean, Wincker, Patrick
Published in PLoS biology (01.10.2011)
Published in PLoS biology (01.10.2011)
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Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
Seeleuthner, Yoann, Mondy, Samuel, Lombard, Vincent, Carradec, Quentin, Pelletier, Eric, Wessner, Marc, Leconte, Jade, Mangot, Jean-François, Poulain, Julie, Labadie, Karine, Logares, Ramiro, Sunagawa, Shinichi, de Berardinis, Véronique, Salanoubat, Marcel, Dimier, Céline, Kandels-Lewis, Stefanie, Picheral, Marc, Searson, Sarah, Pesant, Stephane, Poulton, Nicole, Stepanauskas, Ramunas, Bork, Peer, Bowler, Chris, Hingamp, Pascal, Sullivan, Matthew B., Iudicone, Daniele, Massana, Ramon, Aury, Jean-Marc, Henrissat, Bernard, Karsenti, Eric, Jaillon, Olivier, Sieracki, Mike, de Vargas, Colomban, Wincker, Patrick
Published in Nature communications (22.01.2018)
Published in Nature communications (22.01.2018)
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Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities
Acinas, Silvia G., Sánchez, Pablo, Salazar, Guillem, Cornejo-Castillo, Francisco M., Sebastián, Marta, Logares, Ramiro, Royo-Llonch, Marta, Paoli, Lucas, Sunagawa, Shinichi, Hingamp, Pascal, Ogata, Hiroyuki, Lima-Mendez, Gipsi, Roux, Simon, González, José M., Arrieta, Jesús M., Alam, Intikhab S., Kamau, Allan, Bowler, Chris, Raes, Jeroen, Pesant, Stéphane, Bork, Peer, Agustí, Susana, Gojobori, Takashi, Vaqué, Dolors, Sullivan, Matthew B., Pedrós-Alió, Carlos, Massana, Ramon, Duarte, Carlos M., Gasol, Josep M.
Published in Communications biology (21.05.2021)
Published in Communications biology (21.05.2021)
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Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria
Grébert, Théophile, Doré, Hugo, Partensky, Frédéric, Farrant, Gregory K., Boss, Emmanuel S., Picheral, Marc, Guidi, Lionel, Pesant, Stéphane, Scanlan, David J., Wincker, Patrick, Acinas, Silvia G., Kehoe, David M., Garczarek, Laurence
Published in Proceedings of the National Academy of Sciences - PNAS (27.02.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (27.02.2018)
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Diversity of the Pacific Ocean coral reef microbiome
Galand, Pierre E., Ruscheweyh, Hans-Joachim, Salazar, Guillem, Hochart, Corentin, Henry, Nicolas, Hume, Benjamin C. C., Oliveira, Pedro H., Perdereau, Aude, Labadie, Karine, Belser, Caroline, Boissin, Emilie, Romac, Sarah, Poulain, Julie, Bourdin, Guillaume, Iwankow, Guillaume, Moulin, Clémentine, Armstrong, Eric J., Paz-García, David A., Ziegler, Maren, Agostini, Sylvain, Banaigs, Bernard, Boss, Emmanuel, Bowler, Chris, de Vargas, Colomban, Douville, Eric, Flores, Michel, Forcioli, Didier, Furla, Paola, Gilson, Eric, Lombard, Fabien, Pesant, Stéphane, Reynaud, Stéphanie, Thomas, Olivier P., Troublé, Romain, Zoccola, Didier, Voolstra, Christian R., Thurber, Rebecca Vega, Sunagawa, Shinichi, Wincker, Patrick, Allemand, Denis, Planes, Serge
Published in Nature communications (01.06.2023)
Published in Nature communications (01.06.2023)
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Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean
Hochart, Corentin, Paoli, Lucas, Ruscheweyh, Hans-Joachim, Salazar, Guillem, Boissin, Emilie, Romac, Sarah, Poulain, Julie, Bourdin, Guillaume, Iwankow, Guillaume, Moulin, Clémentine, Ziegler, Maren, Porro, Barbara, Armstrong, Eric J., Hume, Benjamin C. C., Aury, Jean-Marc, Pogoreutz, Claudia, Paz-García, David A., Nugues, Maggy M., Agostini, Sylvain, Banaigs, Bernard, Boss, Emmanuel, Bowler, Chris, de Vargas, Colomban, Douville, Eric, Flores, Michel, Forcioli, Didier, Furla, Paola, Gilson, Eric, Lombard, Fabien, Pesant, Stéphane, Reynaud, Stéphanie, Thomas, Olivier P., Troublé, Romain, Wincker, Patrick, Zoccola, Didier, Allemand, Denis, Planes, Serge, Thurber, Rebecca Vega, Voolstra, Christian R., Sunagawa, Shinichi, Galand, Pierre E.
Published in Nature communications (01.06.2023)
Published in Nature communications (01.06.2023)
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Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
Hingamp, Pascal, Grimsley, Nigel, Acinas, Silvia G, Clerissi, Camille, Subirana, Lucie, Poulain, Julie, Ferrera, Isabel, Sarmento, Hugo, Villar, Emilie, Lima-Mendez, Gipsi, Faust, Karoline, Sunagawa, Shinichi, Claverie, Jean-Michel, Moreau, Hervé, Desdevises, Yves, Bork, Peer, Raes, Jeroen, de Vargas, Colomban, Karsenti, Eric, Kandels-Lewis, Stefanie, Jaillon, Olivier, Not, Fabrice, Pesant, Stéphane, Wincker, Patrick, Ogata, Hiroyuki
Published in The ISME Journal (01.09.2013)
Published in The ISME Journal (01.09.2013)
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Open science resources for the discovery and analysis of Tara Oceans data
Pesant, Stéphane, Not, Fabrice, Picheral, Marc, Kandels-Lewis, Stefanie, Le Bescot, Noan, Gorsky, Gabriel, Iudicone, Daniele, Karsenti, Eric, Speich, Sabrina, Troublé, Romain, Dimier, Céline, Searson, Sarah
Published in Scientific data (26.05.2015)
Published in Scientific data (26.05.2015)
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