Comparative genomics of Aeromonas veronii: Identification of a pathotype impacting aquaculture globally
Tekedar, Hasan C, Kumru, Salih, Blom, Jochen, Perkins, Andy D, Griffin, Matt J, Abdelhamed, Hossam, Karsi, Attila, Lawrence, Mark L
Published in PloS one (29.08.2019)
Published in PloS one (29.08.2019)
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Hematological and gene co-expression network analyses of high-risk beef cattle defines immunological mechanisms and biological complexes involved in bovine respiratory disease and weight gain
Scott, Matthew A, Woolums, Amelia R, Swiderski, Cyprianna E, Finley, Abigail, Perkins, Andy D, Nanduri, Bindu, Karisch, Brandi B
Published in PloS one (03.11.2022)
Published in PloS one (03.11.2022)
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Whole blood transcriptomic analysis of beef cattle at arrival identifies potential predictive molecules and mechanisms that indicate animals that naturally resist bovine respiratory disease
Scott, Matthew A, Woolums, Amelia R, Swiderski, Cyprianna E, Perkins, Andy D, Nanduri, Bindu, Smith, David R, Karisch, Brandi B, Epperson, William B, Blanton, Jr, John R
Published in PloS one (01.01.2020)
Published in PloS one (01.01.2020)
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Comprehensive at-arrival transcriptomic analysis of post-weaned beef cattle uncovers type I interferon and antiviral mechanisms associated with bovine respiratory disease mortality
Scott, Matthew A, Woolums, Amelia R, Swiderski, Cyprianna E, Perkins, Andy D, Nanduri, Bindu, Smith, David R, Karisch, Brandi B, Epperson, William B, Blanton, John R
Published in PloS one (26.04.2021)
Published in PloS one (26.04.2021)
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Genes and regulatory mechanisms associated with experimentally-induced bovine respiratory disease identified using supervised machine learning methodology
Scott, Matthew A., Woolums, Amelia R., Swiderski, Cyprianna E., Perkins, Andy D., Nanduri, Bindu
Published in Scientific reports (25.11.2021)
Published in Scientific reports (25.11.2021)
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Multipopulational transcriptome analysis of post-weaned beef cattle at arrival further validates candidate biomarkers for predicting clinical bovine respiratory disease
Scott, Matthew A., Woolums, Amelia R., Swiderski, Cyprianna E., Perkins, Andy D., Nanduri, Bindu, Smith, David R., Karisch, Brandi B., Epperson, William B., Blanton, John R.
Published in Scientific reports (13.12.2021)
Published in Scientific reports (13.12.2021)
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Use of nCounter mRNA profiling to identify at-arrival gene expression patterns for predicting bovine respiratory disease in beef cattle
Scott, Matthew A, Woolums, Amelia R, Swiderski, Cyprianna E, Thompson, Alexis C, Perkins, Andy D, Nanduri, Bindu, Karisch, Brandi B, Goehl, Dan R
Published in BMC veterinary research (23.02.2022)
Published in BMC veterinary research (23.02.2022)
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Microsatellites as Agents of Adaptive Change: An RNA-Seq-Based Comparative Study of Transcriptomes from Five Helianthus Species
Ranathunge, Chathurani, Pramod, Sreepriya, Renaut, Sébastien, Wheeler, Gregory L., Perkins, Andy D., Rieseberg, Loren H., Welch, Mark E.
Published in Symmetry (Basel) (01.06.2021)
Published in Symmetry (Basel) (01.06.2021)
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Gene Expression Analysis of Copper Tolerance and Wood Decay in the Brown Rot Fungus Fibroporia radiculosa
TANG, Juliet D, PARKER, Leslie A, PERKINS, Andy D, SONSTEGARD, Tad S, SCHROEDER, Steven G, NICHOLAS, Darrel D, DIEHL, Susan V
Published in Applied and Environmental Microbiology (01.03.2013)
Published in Applied and Environmental Microbiology (01.03.2013)
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Exploring the Effect of Climate Factors on SNPs within FHA Domain Genes in Eurasian Arabidopsis Ecotypes
Aldwairi, Tamer, Chevalier, David J., Perkins, Andy D.
Published in Agriculture (Basel) (01.02.2021)
Published in Agriculture (Basel) (01.02.2021)
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Extracting gene networks for low-dose radiation using graph theoretical algorithms
Voy, Brynn H, Scharff, Jon A, Perkins, Andy D, Saxton, Arnold M, Borate, Bhavesh, Chesler, Elissa J, Branstetter, Lisa K, Langston, Michael A
Published in PLoS computational biology (01.07.2006)
Published in PLoS computational biology (01.07.2006)
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Clustering of high throughput gene expression data
Pirim, Harun, Ekşioğlu, Burak, Perkins, Andy D., Yüceer, Çetin
Published in Computers & operations research (01.12.2012)
Published in Computers & operations research (01.12.2012)
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Effects of florfenicol feeding on diversity and composition of the intestinal microbiota of channel catfish (Ictalurus punctatus)
Abdelhamed, Hossam, Ozdemir, Ozan, Waldbieser, Geoffrey, Perkins, Andy D., Lawrence, Mark L., Karsi, Attila
Published in Aquaculture research (01.12.2019)
Published in Aquaculture research (01.12.2019)
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Journal Article
Transcribed microsatellite allele lengths are often correlated with gene expression in natural sunflower populations
Ranathunge, Chathurani, Wheeler, Gregory L., Chimahusky, Melody E., Perkins, Andy D., Pramod, Sreepriya, Welch, Mark E.
Published in Molecular ecology (01.05.2020)
Published in Molecular ecology (01.05.2020)
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Clustering high throughput biological data with B-MST, a minimum spanning tree based heuristic
Pirim, Harun, Ekşioğlu, Burak, Perkins, Andy D
Published in Computers in biology and medicine (01.07.2015)
Published in Computers in biology and medicine (01.07.2015)
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Transcriptome profiles of sunflower reveal the potential role of microsatellites in gene expression divergence
Ranathunge, Chathurani, Wheeler, Gregory L., Chimahusky, Melody E., Kennedy, Meaghan M., Morrison, Jesse I., Baldwin, Brian S., Perkins, Andy D., Welch, Mark E.
Published in Molecular ecology (01.03.2018)
Published in Molecular ecology (01.03.2018)
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A systematic comparison of genome-scale clustering algorithms
Jay, Jeremy J, Eblen, John D, Zhang, Yun, Benson, Mikael, Perkins, Andy D, Saxton, Arnold M, Voy, Brynn H, Chesler, Elissa J, Langston, Michael A
Published in BMC bioinformatics (25.06.2012)
Published in BMC bioinformatics (25.06.2012)
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Relating significance and relations of differentially expressed genes in response to Aspergillus flavus infection in maize
Asters, Matthew C., Williams, W. Paul, Perkins, Andy D., Mylroie, J. Erik, Windham, Gary L., Shan, Xueyan
Published in Scientific reports (28.04.2014)
Published in Scientific reports (28.04.2014)
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