Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data
Byrd, Allyson L, Perez-Rogers, Joseph F, Manimaran, Solaiappan, Castro-Nallar, Eduardo, Toma, Ian, McCaffrey, Tim, Siegel, Marc, Benson, Gary, Crandall, Keith A, Johnson, William Evan
Published in BMC bioinformatics (04.08.2014)
Published in BMC bioinformatics (04.08.2014)
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Journal Article
PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples
Hong, Changjin, Manimaran, Solaiappan, Shen, Ying, Perez-Rogers, Joseph F, Byrd, Allyson L, Castro-Nallar, Eduardo, Crandall, Keith A, Johnson, William Evan
Published in Microbiome (05.09.2014)
Published in Microbiome (05.09.2014)
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Journal Article
Kernelized partial least squares for feature reduction and classification of gene microarray data
Land, Walker H, Qiao, Xingye, Margolis, Daniel E, Ford, William S, Paquette, Christopher T, Perez-Rogers, Joseph F, Borgia, Jeffrey A, Yang, Jack Y, Deng, Youping
Published in BMC systems biology (2011)
Published in BMC systems biology (2011)
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Journal Article
Shared Gene Expression Alterations in Nasal and Bronchial Epithelium for Lung Cancer Detection
Perez-Rogers, Joseph F., Gerrein, Joseph, Anderlind, Christina, Liu, Gang, Zhang, Sherry, Alekseyev, Yuriy, Smith, Kate Porta, Whitney, Duncan, Evan Johnson, W., Elashoff, David A., Dubinett, Steven M., Brody, Jerome, Spira, Avrum, Lenburg, Marc E.
Published in JNCI : Journal of the National Cancer Institute (01.07.2017)
Published in JNCI : Journal of the National Cancer Institute (01.07.2017)
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Journal Article
Abstract A1-66: Leveraging Gene Expression in the Bronchial Airway to Develop a Nasal Biomarker for Early Detection of Lung Cancer
Perez-Rogers, Joseph F., Gerrein, Joseph, Anderlind, Christina, Kusko, Rebecca L., Campbell, Joshua D., Wang, Teresa W., Porta, Kate, Whitney, Duncan, Spira, Avrum, Lenburg, Marc
Published in Cancer research (Chicago, Ill.) (15.11.2015)
Published in Cancer research (Chicago, Ill.) (15.11.2015)
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Journal Article
Abstract B1-50: Leveraging gene expression in the bronchial airway to develop a nasal biomarker for early detection of lung cancer
Perez-Rogers, Joseph F., Gerrein, Joseph, Anderlind, Christina, Kusko, Rebecca L., Campbell, Joshua D., Wang, Teresa, Porta, Kate, Whitney, Duncan, Spira, Avrum, Lenburg, Marc
Published in Cancer research (Chicago, Ill.) (15.11.2015)
Published in Cancer research (Chicago, Ill.) (15.11.2015)
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Journal Article
Abstract 789: Leveraging transcriptomic and genomic data to better select models for preclinical oncology therapeutic development to identify cell lines most similar to patient tumors
Cha, Yoonjeong, Labradorf, Adam, Perez-Rogers, Joseph, Haas, Brian, Lysaght, Andrew, Weiner, Brian, Towfic, Fadi, Fowler, Kevin, Zeskind, Benjamin, Kolitz, Sarah, Vardarajan, Badri, Artyomov, Maxim, Kusko, Rebecca L.
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Journal Article
Leveraging transcriptomic data to pinpoint mechanisms of gemcitabine resistance and potential combination therapies for pancreatic cancer
Kusko, Rebecca L., Cha, Yoonjeong, Perez-Rogers, Joseph, Caballero, Nacho, Koytiger, Gregory, Shankar, Jyoti, Lysaght, Andrew, Weiner, Brian, Kolitz, Sarah, Towfic, Fadi, Fowler, Kevin, Vardarajan, Badri, Artyomov, Maxim, Zeskind, Benjamin
Published in Journal of clinical oncology (20.05.2016)
Published in Journal of clinical oncology (20.05.2016)
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Journal Article
Abstract 3554: Gene and miRNA expression networks specific to never smoker lung adenocarcinoma
Kusko, Rebecca, Garrison, Carly, Wang, Teresa, Campbell, Josh, Perez-Rogers, Joseph, Luo, Lingqi, Beane, Jennifer, Liu, Gang, Kadara, Humam, Belinsky, Steven, Lenburg, Marc E., Spira, Avrum
Published in Cancer research (Chicago, Ill.) (01.10.2014)
Published in Cancer research (Chicago, Ill.) (01.10.2014)
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Journal Article
Abstract 1574: Leveraging bronchial airway gene expression to develop a nasal biomarker for lung cancer detection
Perez-Rogers, Joseph, Gerrein, Joseph, Anderlind, Christina, Xiao, Xiaohui, Liu, Hanqiao, Kusko, Rebecca, Campbell, Joshua, Wang, Teresa, Alekseyev, Yuriy, Liu, Gang, Porta, Kate, Whitney, Duncan, Spira, Avrum, Lenburg, Marc
Published in Cancer research (Chicago, Ill.) (01.08.2015)
Published in Cancer research (Chicago, Ill.) (01.08.2015)
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Journal Article
NASAL EPITHELIUM GENE EXPRESSION SIGNATURE AND CLASSIFIER FOR THE PREDICTION OF LUNG CANCER
SPIRA, Avrum, PEREZ-ROGERS, Joseph, ANDERLIND, Christina, LENBURG, Marc
Year of Publication 23.08.2023
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Year of Publication 23.08.2023
Patent
NASAL EPITHELIUM GENE EXPRESSION SIGNATURE AND CLASSIFIER FOR THE PREDICTION OF LUNG CANCER
SPIRA, Avrum, PEREZ-ROGERS, Joseph, ANDERLIND, Christina, LENBURG, Marc
Year of Publication 17.05.2023
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Year of Publication 17.05.2023
Patent
Kernelized partial least squares for feature reduction and classification of gene microarray data
Land, Walker H, Qiao, Xingye, Margolis, Daniel E, Ford, William S, Paquette, Christopher T, Perez-Rogers, Joseph F, Borgia, Jeffrey A, Yang, Jack Y, Deng, Youping
Published in BMC systems biology (23.12.2011)
Published in BMC systems biology (23.12.2011)
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Journal Article
Informatics platform for integrated clinical care
Barnes, Michael, Oyeniran, Oluwatosin, Lou, Weng Chi, Morita, Mark M, Schmid, Joachim, Burnell, Stephen, Evans, William, Perez-Rogers, Joseph
Year of Publication 27.08.2024
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Year of Publication 27.08.2024
Patent
NASAL EPITHELIUM GENE EXPRESSION SIGNATURE AND CLASSIFIER FOR THE PREDICTION OF LUNG CANCER
Anderlind, Christina, Lenburg, Marc E, Spira, Avrum, Perez-Rogers, Joseph
Year of Publication 09.12.2021
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Year of Publication 09.12.2021
Patent
NASAL EPITHELIUM GENE EXPRESSION SIGNATURE AND CLASSIFIER FOR THE PREDICTION OF LUNG CANCER
SPIRA, Avrum, PEREZ-ROGERS, Joseph, ANDERLIND, Christina, LENBURG, Marc
Year of Publication 04.03.2020
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Year of Publication 04.03.2020
Patent
INFORMATICS PLATFORM FOR INTEGRATED CLINICAL CARE
EVANS, William, LOU, Weng Chi, BARNES, Michael, PEREZ-ROGERS, Joseph, OYENIRAN, Oluwatosin, BURNELL, Stephen, SCHMID, Joachim, MORITA, Mark M
Year of Publication 16.06.2022
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Year of Publication 16.06.2022
Patent
NASAL EPITHELIUM GENE EXPRESSION SIGNATURE AND CLASSIFIER FOR THE PREDICTION OF LUNG CANCER
Anderlind, Christina, Spira, Avrum, Lenburg, Marc, Perez-Rogers, Joseph
Year of Publication 26.09.2019
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Year of Publication 26.09.2019
Patent
NASAL EPITHELIUM GENE EXPRESSION SIGNATURE AND CLASSIFIER FOR THE PREDICTION OF LUNG CANCER
SPIRA, Avrum, PEREZ-ROGERS, Joseph, ANDERLIND, Christina, LENBURG, Marc
Year of Publication 20.03.2019
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Year of Publication 20.03.2019
Patent
INFORMATICS PLATFORM FOR INTEGRATED CLINICAL CARE
EVANS, William, LOU, Weng Chi, BARNES, Michael, PEREZ-ROGERS, Joseph, OYENIRAN, Oluwatosin, BURNELL, Stephen, SCHMID, Joachim, MORITA, Mark M
Year of Publication 04.11.2021
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Year of Publication 04.11.2021
Patent