Pinpointing differentially expressed domains in complex protein mixtures with the cloud service of PatternLab for Proteomics
Leprevost, F.V., Lima, D.B., Crestani, J., Perez-Riverol, Y., Zanchin, N., Barbosa, V.C., Carvalho, P.C.
Published in Journal of proteomics (26.08.2013)
Published in Journal of proteomics (26.08.2013)
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Generation of ENSEMBL-based proteogenomics databases boosts the identification of non-canonical peptides
Umer, Husen M, Audain, Enrique, Zhu, Yafeng, Pfeuffer, Julianus, Sachsenberg, Timo, Lehtiö, Janne, Branca, Rui M, Perez-Riverol, Yasset
Published in Bioinformatics (Oxford, England) (07.02.2022)
Published in Bioinformatics (Oxford, England) (07.02.2022)
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User-friendly, scalable tools and workflows for single-cell RNAseq analysis
Moreno, P., Huang, N., Manning, J.R., Mohammed, S., Solovyev, A., Polanski, K., Bacon, W., Chazarra, R., Talavera-López, C., Doyle, M.A., Marnier, G., Grüning, B., Rasche, H., George, N., Fexova, S., Alibi, M., Miao, Z., Perez-Riverol, Y., Haeussler, M., Brazma, A., Teichmann, S., Meyer, K.B., Papatheodorou, I.
Published in Nature methods (01.04.2021)
Published in Nature methods (01.04.2021)
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Journal Article
Mapping the Melanoma Plasma Proteome (MPP) Using Single-Shot Proteomics Interfaced with the WiMT Database
Almeida, Natália, Rodriguez, Jimmy, Pla Parada, Indira, Perez-Riverol, Yasset, Woldmar, Nicole, Kim, Yonghyo, Oskolas, Henriett, Betancourt, Lazaro, Valdés, Jeovanis Gil, Sahlin, K Barbara, Pizzatti, Luciana, Szasz, A Marcell, Kárpáti, Sarolta, Appelqvist, Roger, Malm, Johan, B Domont, Gilberto, C S Nogueira, Fábio, Marko-Varga, György, Sanchez, Aniel
Published in Cancers (10.12.2021)
Published in Cancers (10.12.2021)
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Journal Article
Production and Generation of Proteogenomics Databases using PyPGATK
Umer, HM, Zhu, YF, Audain, E, Lehtio, J, Branca, R, Perez-Riverol, Y
Published in MOLECULAR & CELLULAR PROTEOMICS (2019)
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Published in MOLECULAR & CELLULAR PROTEOMICS (2019)
Conference Proceeding
ABRF Proteome Informatics Research Group (iPRG) 2016 Study: Inferring Proteoforms from Bottom-up Proteomics Data
Lee, Joon-Yong, Choi, Hyungwon, Colangelo, Christopher M, Davis, Darryl, Hoopmann, Michael R, Käll, Lukas, Lam, Henry, Payne, Samuel H, Perez-Riverol, Yasset, The, Matthew, Wilson, Ryan, Weintraub, Susan T, Palmblad, Magnus
Published in Journal of biomolecular techniques (01.07.2018)
Published in Journal of biomolecular techniques (01.07.2018)
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Journal Article
Introducing an Asp-Pro Linker in the Synthesis of Random One-Bead-One-Compound Hexapeptide Libraries Compatible with ESI-MS Analysis
Masforrol, Yordanka, Gil, Jeovanis, González, Luis Javier, Pérez-Riverol, Yasset, Fernández-de-Cossío, Jorge, Sánchez, Aniel, Betancourt, Lázaro Hiram, Garay, Hilda Elisa, Cabrales, Ania, Albericio, Fernando, Yang, Hongqian, Zubarev, Roman A, Besada, Vladimir, Acosta, Osvaldo Reyes
Published in ACS combinatorial science (12.03.2012)
Published in ACS combinatorial science (12.03.2012)
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