Purity Independent Subtyping of Tumors (PurIST), A Clinically Robust, Single-sample Classifier for Tumor Subtyping in Pancreatic Cancer
Rashid, Naim U, Peng, Xianlu L, Jin, Chong, Moffitt, Richard A, Volmar, Keith E, Belt, Brian A, Panni, Roheena Z, Nywening, Timothy M, Herrera, Silvia G, Moore, Kristin J, Hennessey, Sarah G, Morrison, Ashley B, Kawalerski, Ryan, Nayyar, Apoorve, Chang, Audrey E, Schmidt, Benjamin, Kim, Hong Jin, Linehan, David C, Yeh, Jen Jen
Published in Clinical cancer research (01.01.2020)
Published in Clinical cancer research (01.01.2020)
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Journal Article
MyoD- and FoxO3-mediated hotspot interaction orchestrates super-enhancer activity during myogenic differentiation
Peng, Xianlu L, So, Karl K, He, Liangqiang, Zhao, Yu, Zhou, Jiajian, Li, Yuying, Yao, Mingze, Xu, Bo, Zhang, Suyang, Yao, Hongjie, Hu, Ping, Sun, Hao, Wang, Huating
Published in Nucleic acids research (06.09.2017)
Published in Nucleic acids research (06.09.2017)
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Journal Article
Single-cell transcriptome analysis defines heterogeneity of the murine pancreatic ductal tree
Hendley, Audrey M, Rao, Arjun A, Leonhardt, Laura, Ashe, Sudipta, Smith, Jennifer A, Giacometti, Simone, Peng, Xianlu L, Jiang, Honglin, Berrios, David I, Pawlak, Mathias, Li, Lucia Y, Lee, Jonghyun, Collisson, Eric A, Anderson, Mark S, Fragiadakis, Gabriela K, Yeh, Jen Jen, Ye, Chun Jimmie, Kim, Grace E, Weaver, Valerie M, Hebrok, Matthias
Published in eLife (19.05.2021)
Published in eLife (19.05.2021)
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Journal Article
Open-source curation of a pancreatic ductal adenocarcinoma gene expression analysis platform (pdacR) supports a two-subtype model
Torre-Healy, Luke A., Kawalerski, Ryan R., Oh, Ki, Chrastecka, Lucie, Peng, Xianlu L., Aguirre, Andrew J., Rashid, Naim U., Yeh, Jen Jen, Moffitt, Richard A.
Published in Communications biology (10.02.2023)
Published in Communications biology (10.02.2023)
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Journal Article
CAFomics: convergence to translation for precision stroma approaches
McCabe, Ian C, Peng, Xianlu L, Kearney, Joseph F, Yeh, Jen Jen
Published in Carcinogenesis (New York) (22.11.2024)
Published in Carcinogenesis (New York) (22.11.2024)
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Journal Article
Tumor-intrinsic and Cancer-associated Fibroblast Subtypes Independently Predict Outcomes in Pancreatic Cancer
Lee, Jaewon J, Kearney, Joseph F, Trembath, Hannah E, Hariharan, Arthi, LaBella, Michelle E, Kharitonova, Elena V, Chan, Priscilla S, Morrison, Ashley B, Cliff, Ashley, Meyers, Michael O, Kim, Hong Jin, Rashid, Naim U, Peng, Xianlu L, Yeh, Jen Jen
Published in Annals of surgery (01.10.2024)
Published in Annals of surgery (01.10.2024)
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Journal Article
CRISPR/Cas9/AAV9-mediated in vivo editing identifies MYC regulation of 3D genome in skeletal muscle stem cell
He, Liangqiang, Ding, Yingzhe, Zhao, Yu, So, Karl K., Peng, Xianlu L., Li, Yuying, Yuan, Jie, He, Zhiming, Chen, Xiaona, Sun, Hao, Wang, Huating
Published in Stem cell reports (12.10.2021)
Published in Stem cell reports (12.10.2021)
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Journal Article
Myofibroblastic cancer‐associated fibroblast subtype heterogeneity in pancreatic cancer
Kearney, Joseph F., Trembath, Hannah E., Chan, Priscilla S., Morrison, Ashley B., Xu, Yi, Luan, Chang Fei, McCabe, Ian C., Zarmer, Sandra A., Kim, Hong Jin, Peng, Xianlu L., Yeh, Jen Jen
Published in Journal of surgical oncology (01.04.2024)
Published in Journal of surgical oncology (01.04.2024)
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Journal Article
Irreversible JNK1-JUN inhibition by JNK-IN-8 sensitizes pancreatic cancer to 5-FU/FOLFOX chemotherapy
Lipner, Matthew B, Peng, Xianlu L, Jin, Chong, Xu, Yi, Gao, Yanzhe, East, Michael P, Rashid, Naim U, Moffitt, Richard A, Herrera Loeza, Silvia G, Morrison, Ashley B, Golitz, Brian T, Vaziri, Cyrus, Graves, Lee M, Johnson, Gary L, Yeh, Jen Jen
Published in JCI insight (23.04.2020)
Published in JCI insight (23.04.2020)
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Journal Article
Abstract A048: Paricalcitol improves survival in tumor-permissive cancer-associated fibroblast subtype of pancreatic cancers
Lee, Jaewon J, Chan, Priscilla S, Luan, Changfei, Kharitonova, Elena V, Rashid, Naim U, Peng, Xianlu L, Borazanci, Erkut H, Yeh, Jen Jen
Published in Cancer research (Chicago, Ill.) (15.09.2024)
Published in Cancer research (Chicago, Ill.) (15.09.2024)
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Journal Article
Abstract C015: Clinically usable classification of cancer-associated fibroblast subtypes in pancreatic cancer
Peng, Xianlu L., Kharitonova, Elena, Kearney, Joseph, McCabe, Ian, Jenner, Madison, Morrison, Ashley B., Iuga, Alina, Rashid, Naim U., Yeh, Jen Jen
Published in Cancer research (Chicago, Ill.) (16.01.2024)
Published in Cancer research (Chicago, Ill.) (16.01.2024)
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Journal Article
Abstract A042: Clinical classification of cancer-associated fibroblast subtypes predicts prognosis and treatment response
Peng, Xianlu L, Kharitonova, Elena V, McCabe, Ian C, Luan, Changfei, Zhao, Ryan T, Chan, Priscilla S, Hariharan, Arthi, Leary, John R, Morrison, Ashley B, Kearney, Joseph F, Trembath, Hannah E, Herrera, Gabriela, Cliff, Ashley, Kim, Hong Jin, Belt, Brian A, Panni, Roheena Z, Linehan, David C, Damrauer, Jeffrey S, Iuga, Alina C, Kim, William Y, Rashid, Naim U, Yeh, Jen Jen
Published in Cancer research (Chicago, Ill.) (15.09.2024)
Published in Cancer research (Chicago, Ill.) (15.09.2024)
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Journal Article
Abstract A046: nSMase2-generated ceramide promotes PDA aggression through exosome reprogramming of the stroma
Hendley, Audrey M., Urano, Atsushi, Peng, Xianlu L., Ashe, Sudipta, Phu, Tuan A., Ng, Martin, Kerper, Natanya R., Berrios, David I., Lee, Jonghyun, Jin, David, Jang, Gun H., Gbenedio, Oghenekevwe M., Roose, Jeroen P., Yeh, Jen J., Gallinger, Steven, Biankin, Andrew V., Ntranos, Vasilis, Chang, David K., Dawson, David W., Kim, Grace E., Weaver, Valerie M., Raffai, Robert L., Hebrok, Matthias
Published in Cancer research (Chicago, Ill.) (16.01.2024)
Published in Cancer research (Chicago, Ill.) (16.01.2024)
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Journal Article
Abstract C051: Ceramide signaling regulates PDA aggression through exosome reprogramming of the stroma
Hendley, Audrey M., Urano, Atsushi, Peng, Xianlu L., Ashe, Sudipta, Kerper, Natanya R., Phu, Tuan A., Ng, Martin, Giacometti, Simone, Berrios, David I., Jang, Gun H., Yeh, Jen J., Gallinger, Steven, Chang, David K., Biankin, Andrew V., Weaver, Valerie M., Kim, Grace E., Dawson, David W., Raffai, Robert L., Hebrok, Matthias
Published in Cancer research (Chicago, Ill.) (15.11.2022)
Published in Cancer research (Chicago, Ill.) (15.11.2022)
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Journal Article
Efficient Computation of High-Dimensional Penalized Generalized Linear Mixed Models by Latent Factor Modeling of the Random Effects
Heiling, Hillary M, Rashid, Naim U, Li, Quefeng, Peng, Xianlu L, Yeh, Jen Jen, Ibrahim, Joseph G
Year of Publication 14.05.2023
Year of Publication 14.05.2023
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Journal Article
nSMase2-mediated exosome secretion shapes the tumor microenvironment to immunologically support pancreatic cancer
Hendley, Audrey M, Ashe, Sudipta, Urano, Atsushi, Ng, Martin, Phu, Tuan Anh, Peng, Xianlu L, Luan, Changfei, Finger, Anna-Marie, Jang, Gun Ho, Kerper, Natanya R, Berrios, David I, Jin, David, Lee, Jonghyun, Riahi, Irene R, Gbenedio, Oghenekevwe M, Chung, Christina, Roose, Jeroen P, Yeh, Jen Jen, Gallinger, Steven, Biankin, Andrew V, O'Kane, Grainne M, Ntranos, Vasilis, Chang, David K, Dawson, David W, Kim, Grace E, Weaver, Valerie M, Raffai, Robert L, Hebrok, Matthias
Published in bioRxiv (25.09.2024)
Published in bioRxiv (25.09.2024)
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